Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0000777

Physical Location & Seq

Genomic Coordinates Forward (+)

79141074 .. 79141631

Gene Structure 558 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0593400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGTCACTCAAACTCTCTGGCACTAATATTTTCATAAACCAGCTGCCTTCTTTGATAGAAGAGTTTGGTTCACTGAAAGAGTTGGTTGTGAGTGGGTGCAATATTTCAGAAGGTCCGATACCATTTTCACTAGGTAATCTTAGGGATCTCATCTATTTGGACCTTTCAGCTAATAAGTTCAATGGCCAAATTCCTTCTTCATTTGGGAATCTTACCCAACTCACATATCTTTCACTTGGGGAGAACCATATTAATGGCACTATCCCATGTTTTTTCGGAAATCTTACCCAGCTCGCAATACTTCGTCTTCATGACAATCAATTATCTGGTCCAATCCCATCTAGTCTAGGTAATCTTGGCAAACTTACTGTTCTAGATCTTAATTTCAATAAATTTCAAAGAGAGATTCCTGAGTCATTATTCAATGTAGCAAGTCTCGAGAGACTTCTTCTAGCTTGTAATAATCTCAGTGGTACAGTGGAGCTCCTCAAACTTCTTAAGCTACCAAATTTAAAGTGGCTAGATCTATCCGGTGATCGGAGCATAATTATGCGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0008150 GO:0008152 GO:0008202 GO:0016125 GO:0016491 GO:0044238 GO:0055114 GO:0071704 GO:1901360 GO:1901615

KEGG Pathways

Metabolic & Signaling

ko00592 ko01100 ko01110 map00592 map01100 map01110

Pfam Domains

Protein Families

p450

Protein Analysis

185

Amino Acids

20.36

Weight (kDa)

6.1

Isoelectric Point (pI)

31.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	3 - 79	1.2e-06	Leucine-rich repeat region
LRR_8	PF13855	24 - 84	6.9e-07	Leucine rich repeat
LRR_14	PF23598	67 - 176	2e-10	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000777)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g07410 FvH4_2g07421 FvH4_2g07423 FvH4_5g16260
malus_domestica	MD10G1085800.v1.1
prunus_persica	Prupe.8G110100_v2.0.a1
pyrus_communis	pycom10g03730 pycom10g06740
rosa_chinensis	RchiOBHm_Chr6g0260901 RchiOBHm_Chr6g0260921 RchiOBHm_Chr6g0260931 RchiOBHm_Chr6g0260961 RchiOBHm_Chr6g0261011
rosa_laevigata	RLG00000014467 RLG00000014470 RLG00000014471 RLG00000014473 RLG00000014475 RLG00000014476 RLG00000014477 RLG00000014478 RLG00000018641 RLG00000022453
rosa_multiflora	Rmu_sc0003025.1_g000005 Rmu_sc0003337.1_g000004 Rmu_sc0003337.1_g000028 Rmu_sc0005816.1_g000002 Rmu_sc0005816.1_g000003 Rmu_sc0005816.1_g000011 Rmu_sc0005816.1_g000029 Rmu_sc0005980.1_g000002 Rmu_sc0009186.1_g000002
rosa_roxburghii	Rroxscaffold_2G00122160 Rroxscaffold_7G00207490 Rroxscaffold_7G00207500 Rroxscaffold_7G00207550 Rroxscaffold_7G00207560 Rroxscaffold_7G00207620
rosa_rugosa	Rorug02G0235500.1 Rorug05G0593300 Rorug05G0593300 Rorug05G0593400 Rorug05G0593500.1 Rorug05G0594400
rosa_samantha	Rh6AG112800 Rh6AG113000 Rh6AG113100 Rh6AG113300 Rh6AG113900 Rh6BG106900 Rh6BG107000 Rh6BG107200 Rh6BG107500 Rh6CG103900 Rh6CG104000 Rh6CG104300 Rh6CG104400 Rh6CG104600 Rh6DG094800 Rh6DG094900 Rh6DG095100 Rh6DG095200 Rh6DG095400
rosa_wichuraiana	Rw0G011910 Rw6G009600 Rw6G009610 Rw6G009620 Rw6G009630 Rw6G009670 Rw6G009710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	153
AcoI	YGGCCR	1 cut(s)	184
AcsI	RAATTY	3 cut(s)	189, 392, 508
AfaI	GTAC	1 cut(s)	475
AfiI	CCNNNNNNNGG	1 cut(s)	537
AflII	CTTAAG	1 cut(s)	497
AgsI	TTSAA	4 cut(s)	181, 388, 398, 424
AluBI	AGCT	6 cut(s)	43, 170, 292, 455, 484, 502
AluI	AGCT	6 cut(s)	43, 170, 292, 455, 484, 502
Alw21I	GWGCWC	1 cut(s)	486
Alw26I	GTCTC	2 cut(s)	436, 440
AlwI	GGATC	1 cut(s)	153
Ama87I	CYCGRG	1 cut(s)	437
AoxI	GGCC	1 cut(s)	184
ApeKI	GCWGC	1 cut(s)	43
ApoI	RAATTY	3 cut(s)	189, 392, 508
AseI	ATTAAT	1 cut(s)	252
AspS9I	GGNCC	3 cut(s)	113, 160, 329
AsuHPI	GGTGA	1 cut(s)	545
AvaI	CYCGRG	1 cut(s)	437
AvaII	GGWCC	3 cut(s)	113, 160, 329
BalI	TGGCCA	1 cut(s)	186
BanII	GRGCYC	1 cut(s)	486
BarI	GAAGNNNNNNTAC	2 cut(s)	102, 134
BbsI	GAAGAC	1 cut(s)	299
Bbv12I	GWGCWC	1 cut(s)	486
BbvI	GCAGC	1 cut(s)	30
BccI	CCATC	1 cut(s)	346
BcoDI	GTCTC	2 cut(s)	436, 440
BfaI	CTAG	6 cut(s)	131, 342, 347, 374, 452, 521
BfrI	CTTAAG	1 cut(s)	497
BglII	AGATCT	2 cut(s)	376, 523
BisI	GCNGC	1 cut(s)	44
BlsI	GCNGC	1 cut(s)	45
Bme18I	GGWCC	3 cut(s)	113, 160, 329
BmeT110I	CYCGRG	1 cut(s)	437
BmgT120I	GGNCC	3 cut(s)	113, 160, 329
BpiI	GAAGAC	1 cut(s)	299
BsaWI	WCCGGW	1 cut(s)	530
Bsc4I	CCNNNNNNNGG	1 cut(s)	537
BseLI	CCNNNNNNNGG	1 cut(s)	537
BseMII	CTCAG	2 cut(s)	402, 481
BseRI	GAGGAG	1 cut(s)	476
BseXI	GCAGC	1 cut(s)	30
BseYI	CCCAGC	1 cut(s)	288
BshFI	GGCC	1 cut(s)	186
BsiHKAI	GWGCWC	1 cut(s)	486
BsiHKCI	CYCGRG	1 cut(s)	437
BsiSI	CCGG	1 cut(s)	531
BslI	CCNNNNNNNGG	1 cut(s)	537
BsmAI	GTCTC	2 cut(s)	436, 440
BsnI	GGCC	1 cut(s)	186
BsoBI	CYCGRG	1 cut(s)	437
Bsp1286I	GDGCHC	1 cut(s)	486
Bsp143I	GATC	4 cut(s)	145, 376, 523, 535
BspANI	GGCC	1 cut(s)	186
BspCNI	CTCAG	2 cut(s)	403, 480
BspHI	TCATGA	1 cut(s)	310
BspPI	GGATC	1 cut(s)	153
BspTI	CTTAAG	1 cut(s)	497
BssMI	GATC	4 cut(s)	145, 376, 523, 535
Bst4CI	ACNGT	2 cut(s)	370, 478
Bst6I	CTCTTC	1 cut(s)	54
BstAFI	CTTAAG	1 cut(s)	497
BstC8I	GCNNGC	1 cut(s)	294
BstDEI	CTNAG	3 cut(s)	140, 411, 467
BstKTI	GATC	4 cut(s)	148, 379, 526, 538
BstMAI	GTCTC	2 cut(s)	436, 440
BstMBI	GATC	4 cut(s)	145, 376, 523, 535
BstV1I	GCAGC	1 cut(s)	30
BstV2I	GAAGAC	1 cut(s)	299
BstX2I	RGATCY	3 cut(s)	145, 376, 523
BstXI	CCANNNNNNTGG	1 cut(s)	254
BstYI	RGATCY	3 cut(s)	145, 376, 523
BsuRI	GGCC	1 cut(s)	186
BtsIMutI	CAGTG	3 cut(s)	71, 475, 483
Cac8I	GCNNGC	1 cut(s)	294
CciI	TCATGA	1 cut(s)	310
Cfr13I	GGNCC	3 cut(s)	113, 160, 329
Csp6I	GTAC	1 cut(s)	474
CviAII	CATG	2 cut(s)	267, 311
CviJI	RGCY	8 cut(s)	43, 170, 186, 292, 455, 484, 502, 520
CviKI_1	RGCY	8 cut(s)	43, 170, 186, 292, 455, 484, 502, 520
CviQI	GTAC	1 cut(s)	474
DdeI	CTNAG	3 cut(s)	140, 411, 467
DpnI	GATC	4 cut(s)	147, 378, 525, 537
DpnII	GATC	4 cut(s)	145, 376, 523, 535
DraI	TTTAAA	1 cut(s)	513
EaeI	YGGCCR	1 cut(s)	184
Eam1104I	CTCTTC	1 cut(s)	54
EarI	CTCTTC	1 cut(s)	54
Ecl136II	GAGCTC	1 cut(s)	484
Eco24I	GRGCYC	1 cut(s)	486
Eco47I	GGWCC	3 cut(s)	113, 160, 329
Eco53kI	GAGCTC	1 cut(s)	484
Eco88I	CYCGRG	1 cut(s)	437
EcoICRI	GAGCTC	1 cut(s)	484
EcoT38I	GRGCYC	1 cut(s)	486
FaeI	CATG	2 cut(s)	270, 314
FaiI	YATR	7 cut(s)	35, 226, 249, 268, 312, 545, 551
FatI	CATG	2 cut(s)	266, 310
Fnu4HI	GCNGC	1 cut(s)	44
FriOI	GRGCYC	1 cut(s)	486
Fsp4HI	GCNGC	1 cut(s)	44
FspBI	CTAG	6 cut(s)	131, 342, 347, 374, 452, 521
GluI	GCNGC	1 cut(s)	44
GsaI	CCCAGC	1 cut(s)	292
HaeIII	GGCC	1 cut(s)	186
HapII	CCGG	1 cut(s)	531
Hin1II	CATG	2 cut(s)	270, 314
HinfI	GANTC	3 cut(s)	208, 406, 413
HpaII	CCGG	1 cut(s)	531
HphI	GGTGA	1 cut(s)	545
Hpy166II	GTNNAC	1 cut(s)	71
Hpy188I	TCNGA	4 cut(s)	109, 117, 278, 540
Hpy188III	TCNNGA	5 cut(s)	311, 374, 410, 437, 439
Hpy8I	GTNNAC	1 cut(s)	71
HpyAV	CCTTC	3 cut(s)	57, 104, 204
HpyCH4III	ACNGT	2 cut(s)	370, 478
HpyCH4V	TGCA	1 cut(s)	99
HpyF3I	CTNAG	3 cut(s)	140, 411, 467
Hsp92II	CATG	2 cut(s)	270, 314
Kzo9I	GATC	4 cut(s)	145, 376, 523, 535
LmnI	GCTCC	3 cut(s)	481, 489, 540
LpnPI	CCDG	6 cut(s)	3, 53, 302, 312, 423, 544
Lsp1109I	GCAGC	1 cut(s)	30
MaeI	CTAG	6 cut(s)	131, 342, 347, 374, 452, 521
MaeIII	GTNAC	1 cut(s)	3
MalI	GATC	4 cut(s)	147, 378, 525, 537
MboI	GATC	4 cut(s)	145, 376, 523, 535
MboII	GAAGA	4 cut(s)	71, 189, 299, 440
MflI	RGATCY	3 cut(s)	145, 376, 523
MhlI	GDGCHC	1 cut(s)	486
MlsI	TGGCCA	1 cut(s)	186
MluCI	AATT	6 cut(s)	189, 320, 382, 392, 508, 546
MluNI	TGGCCA	1 cut(s)	186
MlyI	GAGTC	1 cut(s)	422
MnlI	CCTC	1 cut(s)	497
Mox20I	TGGCCA	1 cut(s)	186
MscI	TGGCCA	1 cut(s)	186
MseI	TTAA	4 cut(s)	252, 381, 498, 512
MslI	CAYNNNNRTG	2 cut(s)	252, 548
Msp20I	TGGCCA	1 cut(s)	186
MspA1I	CMGCKG	1 cut(s)	43
MspCI	CTTAAG	1 cut(s)	497
MspI	CCGG	1 cut(s)	531
NdeII	GATC	4 cut(s)	145, 376, 523, 535
NlaIII	CATG	2 cut(s)	270, 314
NmuCI	GTSAC	1 cut(s)	3
PaeR7I	CTCGAG	1 cut(s)	437
PagI	TCATGA	1 cut(s)	310
PfeI	GAWTC	2 cut(s)	208, 406
PkrI	GCNGC	1 cut(s)	45
PleI	GAGTC	1 cut(s)	421
PpsI	GAGTC	1 cut(s)	421
PshBI	ATTAAT	1 cut(s)	252
Psp124BI	GAGCTC	1 cut(s)	486
PspFI	CCCAGC	1 cut(s)	288
PspPI	GGNCC	3 cut(s)	113, 160, 329
PsuI	RGATCY	3 cut(s)	145, 376, 523
PvuII	CAGCTG	1 cut(s)	43
RsaI	GTAC	1 cut(s)	475
RsaNI	GTAC	1 cut(s)	474
RseI	CAYNNNNRTG	2 cut(s)	252, 548
SacI	GAGCTC	1 cut(s)	486
SaqAI	TTAA	4 cut(s)	252, 381, 498, 512
SatI	GCNGC	1 cut(s)	44
Sau3AI	GATC	4 cut(s)	145, 376, 523, 535
Sau96I	GGNCC	3 cut(s)	113, 160, 329
SchI	GAGTC	1 cut(s)	422
SduI	GDGCHC	1 cut(s)	486
Sfr274I	CTCGAG	1 cut(s)	437
SinI	GGWCC	3 cut(s)	113, 160, 329
SlaI	CTCGAG	1 cut(s)	437
SmiMI	CAYNNNNRTG	2 cut(s)	252, 548
SmlI	CTYRAG	2 cut(s)	437, 497
SmoI	CTYRAG	2 cut(s)	437, 497
Sse9I	AATT	6 cut(s)	189, 320, 382, 392, 508, 546
SspI	AATATT	2 cut(s)	28, 103
SspMI	CTAG	6 cut(s)	131, 342, 347, 374, 452, 521
SstI	GAGCTC	1 cut(s)	486
TaaI	ACNGT	2 cut(s)	370, 478
TaqI	TCGA	1 cut(s)	438
TasI	AATT	6 cut(s)	189, 320, 382, 392, 508, 546
TfiI	GAWTC	2 cut(s)	208, 406
Tru1I	TTAA	4 cut(s)	252, 381, 498, 512
Tru9I	TTAA	4 cut(s)	252, 381, 498, 512
TscAI	CASTG	3 cut(s)	78, 475, 483
TseFI	GTSAC	1 cut(s)	3
TseI	GCWGC	1 cut(s)	43
Tsp45I	GTSAC	1 cut(s)	3
TspDTI	ATGAA	3 cut(s)	22, 189, 299
TspRI	CASTG	3 cut(s)	78, 475, 483
Vha464I	CTTAAG	1 cut(s)	497
VpaK11BI	GGWCC	3 cut(s)	113, 160, 329
VspI	ATTAAT	1 cut(s)	252
XapI	RAATTY	3 cut(s)	189, 392, 508
XbaI	TCTAGA	1 cut(s)	373
XcmI	CCANNNNNNNNNTGG	1 cut(s)	513
XhoI	CTCGAG	1 cut(s)	437
XspI	CTAG	6 cut(s)	131, 342, 347, 374, 452, 521

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.