Rh6AG113900

Belongs to the cytochrome P450 family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
Physical Location & Seq
Forward (+)
17043212 .. 17045029
1818 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG113900.1

Sequence Viewer

Length: 1461 bp
ATGTCTTCATCTTCTTCTTCAAACCCATCTGACTCATCATCATCTGCACCACCAAAGCTTCCATTGAAACCAATCCCAGGCGACTATGGCTTACCCTTCTTCGGTCCCATCAAAGATCGTTACAACTATTTCTACAACCAAGGAAAAGATGAGTTCTTCAAAACCCGAATCCAAAAGTACAACTCCACAGTCTTCCGTACAAACATGCCTCCCGGCTCCTTCATCGCTTCAAACCCTAAAGTCATCGCAGTCCTCGACGCGGTGAGCTTCCCTGTTCTCTTCGACACCTCCAAAGTCGAAAAACGTAACGTCTTGGACGGCACCTACATGCCCTCCACATCCTTCACCGGCGGCTATCGCGTCTGTGCCTATCTCGACCCCTCAGAACCGAACCACACTTCTCTCAAGCGCTTCTTCTTGTCTCTACTCGCCAGTCGCCACCACAAGTTCATCCCACTCTTCCAAAACCACTTGTCAGACCTCTTTCTCAACCTGGAAACTGAAATTTCAAAAAATGGCAAAGCAGACTTCAACACCCCGAGCGACGACATGTCCTTTAAGTTCGTCTTCTCGCTGTTCTGCGGGTCAGAAAATACTTCATTGGGTTCCAAAGGGCCATACTTGGTGGCCGCATGGCTCGCACCACAACTGGCTCCGCAGATCACACTCGGGTCGCCCAAGTTGCTGAGCTTTGCTGAAGATTTGTTGCTGCACACTTTTTCCTACCCTGCATTTTTGGTCAAATCGACCTACAAGAAGCTCTACGATGCGTTTTACGAGTCGTCGGCTTCGGTTTTGGACGAGGCCGAGAATAGTTTCGGGATTCCGAGAGACGAAGCTTGCCACAACCTTTTGTTTTTGGCTTGCTTCAATGCTTTTGGTGGCATGAAGCTTTTGTTCCCTGCTTTAATCAAGTGGGTTGGATCCGCAGGAGAGGATTTGCACCGCCAGCTCCGAAATGAAATCAGGGCCCTTGTTAAGGAAAATGATGGGAATGTTACTTTCTCGGCGTTGGATAAGATGAATTTGACCAAGTCCGTGGTTTATGAGGCTTTGAGGATTGAACCTCCGGTTCCGTTCCAGTACGGGAAGGCCAAGGAGGATATCATGGTCCATAGCCATGACGCAGCATTTGAGATCAAAAAGGGGGAAATGATCTTCGGATATCAGCCGTTCGCCACAAAGGATCCGAAGATTTTCGAGAATCCGGAGGAGTTTGTGGGGCATAGGTTTGTAGGAGAAGGTGAGAAATTGTTGAAGTATGTTTATTGGTCAAATGGTCGCGAGACCGATGATCCGACGGTGGAGAATAAGCAGTGCGCGGGGAAGAATTTGGTGTTGCTTGTGTCGAGGTTAATGTTGGTAGAGTTTTTCCTTCGATATGACACTTTTACCGTTGATGTGACTACGGCTTCATTGGGTGCATCAATGACGTTCAAAACATTGACCAAAGCCTCCTGA

Protein Analysis

486

Amino Acids

54.47

Weight (kDa)

6.81

Isoelectric Point (pI)

36.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 314 - 427 4.8e-16 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 320
AccII CGCG 4 cut(s) 260, 360, 1284, 1322
AccIII TCCGGA 1 cut(s) 1207
AciI CCGC 8 cut(s) 260, 351, 582, 630, 656, 927, 946, 1322
AclWI GGATC 5 cut(s) 918, 931, 1181, 1194, 1289
AcoI YGGCCR 1 cut(s) 627
AcsI RAATTY 3 cut(s) 504, 1024, 1330
AcuI CTGAAG 1 cut(s) 717
AfaI GTAC 3 cut(s) 179, 199, 1085
AfeI AGCGCT 1 cut(s) 410
AfiI CCNNNNNNNGG 4 cut(s) 77, 101, 259, 979
AflIII ACRYGT 1 cut(s) 549
AhdI GACNNNNNGTC 1 cut(s) 550
AjnI CCWGG 2 cut(s) 76, 492
AluBI AGCT 7 cut(s) 58, 267, 690, 760, 839, 892, 952
AluI AGCT 7 cut(s) 58, 267, 690, 760, 839, 892, 952
Alw26I GTCTC 3 cut(s) 426, 825, 1280
AlwI GGATC 5 cut(s) 918, 931, 1181, 1194, 1289
Ama87I CYCGRG 2 cut(s) 538, 668
Aor13HI TCCGGA 1 cut(s) 1207
Aor51HI AGCGCT 1 cut(s) 410
AoxI GGCC 5 cut(s) 614, 627, 804, 969, 1092
ApaI GGGCCC 1 cut(s) 973
ApeKI GCWGC 2 cut(s) 709, 1127
ApoI RAATTY 3 cut(s) 504, 1024, 1330
ArsI GACNNNNNNTTYG 2 cut(s) 1115, 1147
Asp700I GAANNNNTTC 2 cut(s) 815, 1196
AspLEI GCGC 2 cut(s) 411, 1322
AspS9I GGNCC 5 cut(s) 104, 614, 969, 970, 1111
AsuC2I CCSGG 1 cut(s) 213
AsuHPI GGTGA 3 cut(s) 274, 337, 1256
AvaI CYCGRG 2 cut(s) 538, 668
AvaII GGWCC 2 cut(s) 104, 1111
BaeGI GKGCMC 1 cut(s) 973
BamHI GGATCC 2 cut(s) 923, 1186
BanI GGYRCC 1 cut(s) 320
BanII GRGCYC 1 cut(s) 973
BbsI GAAGAC 2 cut(s) 184, 559
BbvI GCAGC 2 cut(s) 696, 1139
BccI CCATC 3 cut(s) 34, 116, 983
BceAI ACGGC 3 cut(s) 334, 1156, 1425
BciT130I CCWGG 2 cut(s) 78, 494
BcnI CCSGG 1 cut(s) 213
BcoDI GTCTC 3 cut(s) 426, 825, 1280
BfoI RGCGCY 1 cut(s) 412
BisI GCNGC 4 cut(s) 352, 630, 710, 1128
BlpI GCTNAGC 1 cut(s) 686
BlsI GCNGC 4 cut(s) 353, 631, 711, 1129
Bme1390I CCNGG 3 cut(s) 78, 213, 494
Bme18I GGWCC 2 cut(s) 104, 1111
BmeRI GACNNNNNGTC 1 cut(s) 550
BmeT110I CYCGRG 2 cut(s) 538, 668
BmgT120I GGNCC 5 cut(s) 104, 614, 969, 970, 1111
BmiI GGNNCC 9 cut(s) 106, 217, 322, 607, 654, 925, 971, 1074, 1188
BmrFI CCNGG 3 cut(s) 78, 213, 494
BmsI GCATC 2 cut(s) 757, 1433
BpiI GAAGAC 2 cut(s) 184, 559
Bpu1102I GCTNAGC 1 cut(s) 686
BpuEI CTTGAG 1 cut(s) 389
BpuMI CCSGG 1 cut(s) 213
BsaI GGTCTC 1 cut(s) 1280
BsaJI CCNNGG 4 cut(s) 76, 139, 1038, 1095
BsaWI WCCGGW 2 cut(s) 1069, 1207
BsaXI ACNNNNNCTCC 2 cut(s) 317, 347
Bsc4I CCNNNNNNNGG 4 cut(s) 77, 101, 259, 979
Bse118I RCCGGY 1 cut(s) 347
Bse1I ACTGG 3 cut(s) 432, 654, 1081
BseAI TCCGGA 1 cut(s) 1207
BseBI CCWGG 2 cut(s) 78, 494
BseDI CCNNGG 4 cut(s) 76, 139, 1038, 1095
BseGI GGATG 2 cut(s) 338, 450
BseLI CCNNNNNNNGG 4 cut(s) 77, 101, 259, 979
BseMII CTCAG 2 cut(s) 396, 677
BseNI ACTGG 3 cut(s) 432, 654, 1081
BseRI GAGGAG 1 cut(s) 1226
BseSI GKGCMC 1 cut(s) 973
BseXI GCAGC 2 cut(s) 696, 1139
BsgI GTGCAG 2 cut(s) 30, 695
Bsh1236I CGCG 4 cut(s) 260, 360, 1284, 1322
BshFI GGCC 5 cut(s) 616, 629, 806, 971, 1094
BshNI GGYRCC 1 cut(s) 320
BsiHKCI CYCGRG 2 cut(s) 538, 668
BsiSI CCGG 4 cut(s) 213, 348, 1070, 1208
BslFI GGGAC 1 cut(s) 90
BslI CCNNNNNNNGG 4 cut(s) 77, 101, 259, 979
BsmAI GTCTC 3 cut(s) 426, 825, 1280
BsmBI CGTCTC 1 cut(s) 825
BsmFI GGGAC 1 cut(s) 90
BsnI GGCC 5 cut(s) 616, 629, 806, 971, 1094
Bso31I GGTCTC 1 cut(s) 1280
BsoBI CYCGRG 2 cut(s) 538, 668
Bsp120I GGGCCC 1 cut(s) 969
Bsp1286I GDGCHC 1 cut(s) 973
Bsp13I TCCGGA 1 cut(s) 1207
Bsp143I GATC 7 cut(s) 115, 660, 923, 1137, 1155, 1186, 1294
Bsp1720I GCTNAGC 1 cut(s) 686
Bsp68I TCGCGA 1 cut(s) 1284
BspACI CCGC 8 cut(s) 260, 351, 582, 630, 656, 927, 946, 1322
BspANI GGCC 5 cut(s) 616, 629, 806, 971, 1094
BspCNI CTCAG 2 cut(s) 395, 678
BspEI TCCGGA 1 cut(s) 1207
BspFNI CGCG 4 cut(s) 260, 360, 1284, 1322
BspLI GGNNCC 9 cut(s) 106, 217, 322, 607, 654, 925, 971, 1074, 1188
BspPI GGATC 5 cut(s) 918, 931, 1181, 1194, 1289
BspT107I GGYRCC 1 cut(s) 320
BspTNI GGTCTC 1 cut(s) 1280
BsrFI RCCGGY 1 cut(s) 347
BsrI ACTGG 3 cut(s) 432, 654, 1081
BssAI RCCGGY 1 cut(s) 347
BssECI CCNNGG 4 cut(s) 76, 139, 1038, 1095
BssMI GATC 7 cut(s) 115, 660, 923, 1137, 1155, 1186, 1294
BssT1I CCWWGG 2 cut(s) 139, 1095
Bst2UI CCWGG 2 cut(s) 78, 494
Bst4CI ACNGT 3 cut(s) 190, 1303, 1396
Bst6I CTCTTC 2 cut(s) 284, 464
BstC8I GCNNGC 4 cut(s) 639, 841, 865, 950
BstDEI CTNAG 2 cut(s) 382, 686
BstDSI CCRYGG 1 cut(s) 1038
BstENI CCTNNNNNAGG 1 cut(s) 977
BstF5I GGATG 2 cut(s) 338, 450
BstFNI CGCG 4 cut(s) 260, 360, 1284, 1322
BstH2I RGCGCY 1 cut(s) 412
BstHHI GCGC 2 cut(s) 411, 1322
BstKTI GATC 7 cut(s) 118, 663, 926, 1140, 1158, 1189, 1297
BstMAI GTCTC 3 cut(s) 426, 825, 1280
BstMBI GATC 7 cut(s) 115, 660, 923, 1137, 1155, 1186, 1294
BstMWI GCNNNNNNNGC 5 cut(s) 87, 357, 638, 682, 949
BstNI CCWGG 2 cut(s) 78, 494
BstNSI RCATGY 3 cut(s) 208, 331, 553
BstSCI CCNGG 3 cut(s) 76, 211, 492
BstSLI GKGCMC 1 cut(s) 973
BstUI CGCG 4 cut(s) 260, 360, 1284, 1322
BstV1I GCAGC 2 cut(s) 696, 1139
BstV2I GAAGAC 2 cut(s) 184, 559
BstX2I RGATCY 2 cut(s) 923, 1186
BstXI CCANNNNNNTGG 1 cut(s) 1039
BstYI RGATCY 2 cut(s) 923, 1186
BsuRI GGCC 5 cut(s) 616, 629, 806, 971, 1094
BtgI CCRYGG 1 cut(s) 1038
BtgZI GCGATG 2 cut(s) 208, 229
BtsCI GGATG 2 cut(s) 338, 450
BtsI GCAGTG 1 cut(s) 1322
BtsIMutI CAGTG 1 cut(s) 1322
BtuMI TCGCGA 1 cut(s) 1284
Cac8I GCNNGC 4 cut(s) 639, 841, 865, 950
CfoI GCGC 2 cut(s) 411, 1322
Cfr10I RCCGGY 1 cut(s) 347
Cfr13I GGNCC 5 cut(s) 104, 614, 969, 970, 1111
CseI GACGC 3 cut(s) 266, 349, 1133
Csp6I GTAC 3 cut(s) 178, 198, 1084
CviAII CATG 7 cut(s) 205, 328, 550, 633, 886, 1108, 1121
CviQI GTAC 3 cut(s) 178, 198, 1084
DdeI CTNAG 2 cut(s) 382, 686
DpnI GATC 7 cut(s) 117, 662, 925, 1139, 1157, 1188, 1296
DpnII GATC 7 cut(s) 115, 660, 923, 1137, 1155, 1186, 1294
DriI GACNNNNNGTC 1 cut(s) 550
EaeI YGGCCR 1 cut(s) 627
Eam1104I CTCTTC 2 cut(s) 284, 464
Eam1105I GACNNNNNGTC 1 cut(s) 550
EarI CTCTTC 2 cut(s) 284, 464
Eco130I CCWWGG 2 cut(s) 139, 1095
Eco24I GRGCYC 1 cut(s) 973
Eco31I GGTCTC 1 cut(s) 1280
Eco32I GATATC 2 cut(s) 1105, 1166
Eco47I GGWCC 2 cut(s) 104, 1111
Eco47III AGCGCT 1 cut(s) 410
Eco57I CTGAAG 1 cut(s) 717
Eco88I CYCGRG 2 cut(s) 538, 668
EcoNI CCTNNNNNAGG 1 cut(s) 977
EcoO109I RGGNCCY 2 cut(s) 969, 970
EcoRII CCWGG 2 cut(s) 76, 492
EcoRV GATATC 2 cut(s) 1105, 1166
EcoT14I CCWWGG 2 cut(s) 139, 1095
EcoT38I GRGCYC 1 cut(s) 973
ErhI CCWWGG 2 cut(s) 139, 1095
Esp3I CGTCTC 1 cut(s) 825
FaeI CATG 7 cut(s) 208, 331, 553, 636, 889, 1111, 1124
FalI AAGNNNNNCTT 4 cut(s) 398, 430, 551, 583
FaqI GGGAC 1 cut(s) 90
FatI CATG 7 cut(s) 204, 327, 549, 632, 885, 1107, 1120
FauI CCCGC 2 cut(s) 575, 1315
Fnu4HI GCNGC 4 cut(s) 352, 630, 710, 1128
FokI GGATG 2 cut(s) 325, 437
FriOI GRGCYC 1 cut(s) 973
Fsp4HI GCNGC 4 cut(s) 352, 630, 710, 1128
GlaI GCGC 2 cut(s) 410, 1321
GluI GCNGC 4 cut(s) 352, 630, 710, 1128
HaeII RGCGCY 1 cut(s) 412
HaeIII GGCC 5 cut(s) 616, 629, 806, 971, 1094
HapII CCGG 4 cut(s) 213, 348, 1070, 1208
HgaI GACGC 3 cut(s) 266, 349, 1133
HhaI GCGC 2 cut(s) 411, 1322
Hin1II CATG 7 cut(s) 208, 331, 553, 636, 889, 1111, 1124
Hin6I GCGC 2 cut(s) 409, 1320
HinP1I GCGC 2 cut(s) 409, 1320
HindIII AAGCTT 3 cut(s) 56, 837, 890
HinfI GANTC 5 cut(s) 32, 168, 779, 823, 1204
HpaII CCGG 4 cut(s) 213, 348, 1070, 1208
HphI GGTGA 3 cut(s) 274, 337, 1256
Hpy188I TCNGA 9 cut(s) 31, 385, 478, 589, 828, 956, 1163, 1191, 1299
Hpy188III TCNNGA 6 cut(s) 374, 820, 1201, 1208, 1283, 1458
Hpy99I CGWCG 4 cut(s) 260, 548, 787, 1303
HpyAV CCTTC 6 cut(s) 106, 229, 352, 1084, 1235, 1385
HpyCH4III ACNGT 3 cut(s) 190, 1303, 1396
HpyCH4IV ACGT 3 cut(s) 304, 309, 1433
HpyCH4V TGCA 5 cut(s) 47, 712, 731, 943, 1424
HpyF10VI GCNNNNNNNGC 5 cut(s) 87, 357, 638, 682, 949
HpyF3I CTNAG 2 cut(s) 382, 686
HpySE526I ACGT 3 cut(s) 304, 309, 1433
Hsp92II CATG 7 cut(s) 208, 331, 553, 636, 889, 1111, 1124
HspAI GCGC 2 cut(s) 409, 1320
Kpn2I TCCGGA 1 cut(s) 1207
Kzo9I GATC 7 cut(s) 115, 660, 923, 1137, 1155, 1186, 1294
LmnI GCTCC 3 cut(s) 221, 658, 957
Lsp1109I GCAGC 2 cut(s) 696, 1139
LweI GCATC 2 cut(s) 757, 1433
MaeII ACGT 3 cut(s) 304, 309, 1433
MaeIII GTNAC 4 cut(s) 119, 305, 997, 1402
MalI GATC 7 cut(s) 117, 662, 925, 1139, 1157, 1188, 1296
MboI GATC 7 cut(s) 115, 660, 923, 1137, 1155, 1186, 1294
MflI RGATCY 2 cut(s) 923, 1186
MhlI GDGCHC 1 cut(s) 973
MluCI AATT 4 cut(s) 504, 1024, 1250, 1330
MlyI GAGTC 2 cut(s) 26, 788
MmeI TCCRAC 3 cut(s) 901, 993, 1322
MroI TCCGGA 1 cut(s) 1207
MroXI GAANNNNTTC 2 cut(s) 815, 1196
MseI TTAA 4 cut(s) 558, 908, 978, 1355
MslI CAYNNNNRTG 2 cut(s) 326, 1119
MspI CCGG 4 cut(s) 213, 348, 1070, 1208
MspR9I CCNGG 3 cut(s) 78, 213, 494
MvaI CCWGG 2 cut(s) 78, 494
MvnI CGCG 4 cut(s) 260, 360, 1284, 1322
MwoI GCNNNNNNNGC 5 cut(s) 87, 357, 638, 682, 949
NciI CCSGG 1 cut(s) 213
NdeII GATC 7 cut(s) 115, 660, 923, 1137, 1155, 1186, 1294
NlaIII CATG 7 cut(s) 208, 331, 553, 636, 889, 1111, 1124
NlaIV GGNNCC 9 cut(s) 106, 217, 322, 607, 654, 925, 971, 1074, 1188
NmeAIII GCCGAG 2 cut(s) 832, 986
NmuCI GTSAC 1 cut(s) 1402
NruI TCGCGA 1 cut(s) 1284
NspI RCATGY 3 cut(s) 208, 331, 553
PciI ACATGT 1 cut(s) 549
PcsI WCGNNNNNNNCGW 1 cut(s) 252
PdmI GAANNNNTTC 2 cut(s) 815, 1196
PfeI GAWTC 3 cut(s) 168, 823, 1204
PflFI GACNNNGTC 1 cut(s) 1033
PkrI GCNGC 4 cut(s) 353, 631, 711, 1129
PleI GAGTC 2 cut(s) 26, 787
PpsI GAGTC 2 cut(s) 26, 787
PscI ACATGT 1 cut(s) 549
Psp6I CCWGG 2 cut(s) 76, 492
PspGI CCWGG 2 cut(s) 76, 492
PspN4I GGNNCC 9 cut(s) 106, 217, 322, 607, 654, 925, 971, 1074, 1188
PspOMI GGGCCC 1 cut(s) 969
PspPI GGNCC 5 cut(s) 104, 614, 969, 970, 1111
PsuI RGATCY 2 cut(s) 923, 1186
PsyI GACNNNGTC 1 cut(s) 1033
RruI TCGCGA 1 cut(s) 1284
RsaI GTAC 3 cut(s) 179, 199, 1085
RsaNI GTAC 3 cut(s) 178, 198, 1084
RseI CAYNNNNRTG 2 cut(s) 326, 1119
SaqAI TTAA 4 cut(s) 558, 908, 978, 1355
SatI GCNGC 4 cut(s) 352, 630, 710, 1128
Sau3AI GATC 7 cut(s) 115, 660, 923, 1137, 1155, 1186, 1294
Sau96I GGNCC 5 cut(s) 104, 614, 969, 970, 1111
SchI GAGTC 2 cut(s) 26, 788
ScrFI CCNGG 3 cut(s) 78, 213, 494
SduI GDGCHC 1 cut(s) 973
SfaNI GCATC 2 cut(s) 757, 1433
SgrAI CRCCGGYG 1 cut(s) 347
SinI GGWCC 2 cut(s) 104, 1111
SmiMI CAYNNNNRTG 2 cut(s) 326, 1119
SmlI CTYRAG 1 cut(s) 404
SmoI CTYRAG 1 cut(s) 404
Sse9I AATT 4 cut(s) 504, 1024, 1250, 1330
SsiI CCGC 8 cut(s) 260, 351, 582, 630, 656, 927, 946, 1322
StyD4I CCNGG 3 cut(s) 76, 211, 492
StyI CCWWGG 2 cut(s) 139, 1095
TaaI ACNGT 3 cut(s) 190, 1303, 1396
TaiI ACGT 3 cut(s) 307, 312, 1436
TaqI TCGA 8 cut(s) 255, 282, 297, 375, 746, 1200, 1349, 1378
TaqII GACCGA 2 cut(s) 92, 1304
TasI AATT 4 cut(s) 504, 1024, 1250, 1330
TatI WGTACW 1 cut(s) 177
TauI GCSGC 2 cut(s) 354, 632
TfiI GAWTC 3 cut(s) 168, 823, 1204
Tru1I TTAA 4 cut(s) 558, 908, 978, 1355
Tru9I TTAA 4 cut(s) 558, 908, 978, 1355
TscAI CASTG 1 cut(s) 1322
TseFI GTSAC 1 cut(s) 1402
TseI GCWGC 2 cut(s) 709, 1127
Tsp45I GTSAC 1 cut(s) 1402
TspDTI ATGAA 7 cut(s) 211, 439, 588, 902, 975, 1037, 1404
TspGWI ACGGA 3 cut(s) 185, 1027, 1065
TspRI CASTG 1 cut(s) 1322
Tth111I GACNNNGTC 1 cut(s) 1033
VpaK11BI GGWCC 2 cut(s) 104, 1111
XagI CCTNNNNNAGG 1 cut(s) 977
XapI RAATTY 3 cut(s) 504, 1024, 1330
XceI RCATGY 3 cut(s) 208, 331, 553
XmnI GAANNNNTTC 2 cut(s) 815, 1196
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.