Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0000777

Physical Location & Seq

Genomic Coordinates Reverse (-)

79273119 .. 79276112

Gene Structure 2994 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0594400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGGAAAGAAAACATGAGAATAAAGCATGCCACTTCATGATAACTGATCGAGTAAATAGTATGTTGAACAGAGCCCAGCTCATTCCAACTAGTACTACTCTACTAGTCCAAAATCTAGAACCCTACGTCTCCGACGATGATGTCCGGCGGGTGTTTGAAAAGTTTGGGTCTTTGGAGAGCGTACAGATTATTGTCACGAATCCGAACACTACCAAGCCGCATGTGCCATACAAGTTTGCTGCAATGGTGAAGTTTTCAAGCTCCACCGAGGCCAAGAATGCATTACAAGGCGCAGATGGCGTAAATGACTGGGTGGTGGTGAGGTATGATCCAGATTCGAGGCCTCTTCCGTTCAAGCTCACGAATAAGCATAAGAACCGACTGCCGCCGTGGTTGTACACCCCGCGGCAGTTGGCCGATTTGGTCGAGAAGAATGAGCGTGTTCCTCCATTAACTCGACCCACTATCCAAGCCACTGGCTTGCCAGAGAACTTGAATGGCCTCATTGCACAAAGAATGGCACCGGCTCGACTTCAGCTTAACCTTGGTCCAGGGGTCACACCACCATCATCCTCTGGTATGCTAGCATTTGATTATGTTTGTGTGTGGATTCACCTCACTCCACCGGCAAGTCACAAACTGTTGATTGATGAAATCTTAGTTTTGATTGATGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0008150 GO:0008152 GO:0008202 GO:0016125 GO:0016491 GO:0044238 GO:0055114 GO:0071704 GO:1901360 GO:1901615

KEGG Pathways

Metabolic & Signaling

ko00592 ko01100 ko01110 map00592 map01100 map01110

Pfam Domains

Protein Families

p450

Protein Analysis

225

Amino Acids

25.27

Weight (kDa)

8.87

Isoelectric Point (pI)

40.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	34 - 100	3.6e-09	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000777)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g07410 FvH4_2g07421 FvH4_2g07423 FvH4_5g16260
malus_domestica	MD10G1085800.v1.1
prunus_persica	Prupe.8G110100_v2.0.a1
pyrus_communis	pycom10g03730 pycom10g06740
rosa_chinensis	RchiOBHm_Chr6g0260901 RchiOBHm_Chr6g0260921 RchiOBHm_Chr6g0260931 RchiOBHm_Chr6g0260961 RchiOBHm_Chr6g0261011
rosa_laevigata	RLG00000014467 RLG00000014470 RLG00000014471 RLG00000014473 RLG00000014475 RLG00000014476 RLG00000014477 RLG00000014478 RLG00000018641 RLG00000022453
rosa_multiflora	Rmu_sc0003025.1_g000005 Rmu_sc0003337.1_g000004 Rmu_sc0003337.1_g000028 Rmu_sc0005816.1_g000002 Rmu_sc0005816.1_g000003 Rmu_sc0005816.1_g000011 Rmu_sc0005816.1_g000029 Rmu_sc0005980.1_g000002 Rmu_sc0009186.1_g000002
rosa_roxburghii	Rroxscaffold_2G00122160 Rroxscaffold_7G00207490 Rroxscaffold_7G00207500 Rroxscaffold_7G00207550 Rroxscaffold_7G00207560 Rroxscaffold_7G00207620
rosa_rugosa	Rorug02G0235500.1 Rorug05G0593300 Rorug05G0593300 Rorug05G0593400 Rorug05G0593500.1 Rorug05G0594400
rosa_samantha	Rh6AG112800 Rh6AG113000 Rh6AG113100 Rh6AG113300 Rh6AG113900 Rh6BG106900 Rh6BG107000 Rh6BG107200 Rh6BG107500 Rh6CG103900 Rh6CG104000 Rh6CG104300 Rh6CG104400 Rh6CG104600 Rh6DG094800 Rh6DG094900 Rh6DG095100 Rh6DG095200 Rh6DG095400
rosa_wichuraiana	Rw0G011910 Rw6G009600 Rw6G009610 Rw6G009620 Rw6G009630 Rw6G009670 Rw6G009710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	140
AccB1I	GGYRCC	1 cut(s)	520
AccII	CGCG	1 cut(s)	406
AciI	CCGC	5 cut(s)	148, 218, 386, 404, 406
AclWI	GGATC	1 cut(s)	323
AcoI	YGGCCR	1 cut(s)	414
AcuI	CTGAAG	1 cut(s)	518
AfaI	GTAC	3 cut(s)	94, 183, 398
AgsI	TTSAA	5 cut(s)	67, 158, 258, 355, 496
AhlI	ACTAGT	2 cut(s)	89, 103
AjnI	CCWGG	1 cut(s)	550
AluBI	AGCT	4 cut(s)	79, 261, 358, 538
AluI	AGCT	4 cut(s)	79, 261, 358, 538
Alw26I	GTCTC	1 cut(s)	133
AlwI	GGATC	1 cut(s)	323
AoxI	GGCC	4 cut(s)	270, 341, 414, 499
ApeKI	GCWGC	1 cut(s)	239
AspLEI	GCGC	1 cut(s)	293
AspS9I	GGNCC	1 cut(s)	548
AsuHPI	GGTGA	3 cut(s)	259, 331, 605
AsuNHI	GCTAGC	1 cut(s)	583
AvaII	GGWCC	1 cut(s)	548
BanI	GGYRCC	1 cut(s)	520
BanII	GRGCYC	1 cut(s)	76
BbvI	GCAGC	1 cut(s)	226
BccI	CCATC	2 cut(s)	290, 574
BceAI	ACGGC	1 cut(s)	373
BciT130I	CCWGG	1 cut(s)	552
BcoDI	GTCTC	1 cut(s)	133
BcuI	ACTAGT	2 cut(s)	89, 103
BfaI	CTAG	4 cut(s)	90, 104, 116, 584
BisI	GCNGC	4 cut(s)	218, 240, 386, 407
BlsI	GCNGC	4 cut(s)	219, 241, 387, 408
BmcAI	AGTACT	1 cut(s)	94
Bme1390I	CCNGG	1 cut(s)	552
Bme18I	GGWCC	1 cut(s)	548
BmgT120I	GGNCC	1 cut(s)	548
BmiI	GGNNCC	1 cut(s)	522
BmrFI	CCNGG	1 cut(s)	552
BmrI	ACTGGG	1 cut(s)	319
BmsI	GCATC	1 cut(s)	661
BmtI	GCTAGC	1 cut(s)	587
BmuI	ACTGGG	1 cut(s)	319
BplI	GAGNNNNNCTC	2 cut(s)	63, 95
BsaJI	CCNNGG	5 cut(s)	267, 389, 404, 544, 551
Bse118I	RCCGGY	2 cut(s)	523, 625
Bse1I	ACTGG	2 cut(s)	314, 481
Bse3DI	GCAATG	2 cut(s)	249, 504
BseBI	CCWGG	1 cut(s)	552
BseDI	CCNNGG	5 cut(s)	267, 389, 404, 544, 551
BseGI	GGATG	1 cut(s)	569
BseMI	GCAATG	2 cut(s)	249, 504
BseNI	ACTGG	2 cut(s)	314, 481
BseXI	GCAGC	1 cut(s)	226
BseYI	CCCAGC	1 cut(s)	75
Bsh1236I	CGCG	1 cut(s)	406
BshFI	GGCC	4 cut(s)	272, 343, 416, 501
BshNI	GGYRCC	1 cut(s)	520
BsiSI	CCGG	3 cut(s)	145, 524, 626
BsmAI	GTCTC	1 cut(s)	133
BsmBI	CGTCTC	1 cut(s)	133
BsmI	GAATGC	1 cut(s)	283
BsnI	GGCC	4 cut(s)	272, 343, 416, 501
Bsp1286I	GDGCHC	1 cut(s)	76
Bsp1407I	TGTACA	1 cut(s)	396
Bsp143I	GATC	2 cut(s)	46, 328
BspACI	CCGC	5 cut(s)	148, 218, 386, 404, 406
BspANI	GGCC	4 cut(s)	272, 343, 416, 501
BspFNI	CGCG	1 cut(s)	406
BspHI	TCATGA	1 cut(s)	36
BspLI	GGNNCC	1 cut(s)	522
BspOI	GCTAGC	1 cut(s)	587
BspPI	GGATC	1 cut(s)	323
BspT107I	GGYRCC	1 cut(s)	520
BsrDI	GCAATG	2 cut(s)	249, 504
BsrFI	RCCGGY	2 cut(s)	523, 625
BsrGI	TGTACA	1 cut(s)	396
BsrI	ACTGG	2 cut(s)	314, 481
BssAI	RCCGGY	2 cut(s)	523, 625
BssECI	CCNNGG	5 cut(s)	267, 389, 404, 544, 551
BssMI	GATC	2 cut(s)	46, 328
BssT1I	CCWWGG	1 cut(s)	544
Bst2UI	CCWGG	1 cut(s)	552
Bst4CI	ACNGT	1 cut(s)	642
Bst6I	CTCTTC	1 cut(s)	351
BstAUI	TGTACA	1 cut(s)	396
BstC8I	GCNNGC	3 cut(s)	28, 482, 585
BstDEI	CTNAG	2 cut(s)	658, 675
BstDSI	CCRYGG	2 cut(s)	389, 404
BstF5I	GGATG	1 cut(s)	569
BstFNI	CGCG	1 cut(s)	406
BstHHI	GCGC	1 cut(s)	293
BstKTI	GATC	2 cut(s)	49, 331
BstMAI	GTCTC	1 cut(s)	133
BstMBI	GATC	2 cut(s)	46, 328
BstMWI	GCNNNNNNNGC	3 cut(s)	223, 278, 297
BstNI	CCWGG	1 cut(s)	552
BstNSI	RCATGY	2 cut(s)	30, 224
BstSCI	CCNGG	1 cut(s)	550
BstUI	CGCG	1 cut(s)	406
BstV1I	GCAGC	1 cut(s)	226
BstXI	CCANNNNNNTGG	1 cut(s)	476
BsuRI	GGCC	4 cut(s)	272, 343, 416, 501
BtgI	CCRYGG	2 cut(s)	389, 404
BtsCI	GGATG	1 cut(s)	569
BtsIMutI	CAGTG	1 cut(s)	474
Cac8I	GCNNGC	3 cut(s)	28, 482, 585
CciI	TCATGA	1 cut(s)	36
CfoI	GCGC	1 cut(s)	293
Cfr10I	RCCGGY	2 cut(s)	523, 625
Cfr13I	GGNCC	1 cut(s)	548
Cfr42I	CCGCGG	1 cut(s)	407
Csp6I	GTAC	3 cut(s)	93, 182, 397
CviAII	CATG	4 cut(s)	14, 27, 37, 221
CviQI	GTAC	3 cut(s)	93, 182, 397
DdeI	CTNAG	2 cut(s)	658, 675
DpnI	GATC	2 cut(s)	48, 330
DpnII	GATC	2 cut(s)	46, 328
DrdI	GACNNNNNNGTC	1 cut(s)	140
DseDI	GACNNNNNNGTC	1 cut(s)	140
EaeI	YGGCCR	1 cut(s)	414
Eam1104I	CTCTTC	1 cut(s)	351
EarI	CTCTTC	1 cut(s)	351
Eco130I	CCWWGG	1 cut(s)	544
Eco147I	AGGCCT	1 cut(s)	343
Eco24I	GRGCYC	1 cut(s)	76
Eco47I	GGWCC	1 cut(s)	548
Eco57I	CTGAAG	1 cut(s)	518
EcoRII	CCWGG	1 cut(s)	550
EcoT14I	CCWWGG	1 cut(s)	544
EcoT22I	ATGCAT	1 cut(s)	283
EcoT38I	GRGCYC	1 cut(s)	76
ErhI	CCWWGG	1 cut(s)	544
Esp3I	CGTCTC	1 cut(s)	133
FaeI	CATG	4 cut(s)	17, 30, 40, 224
FatI	CATG	4 cut(s)	13, 26, 36, 220
FauI	CCCGC	2 cut(s)	141, 411
Fnu4HI	GCNGC	4 cut(s)	218, 240, 386, 407
FokI	GGATG	1 cut(s)	556
FriOI	GRGCYC	1 cut(s)	76
Fsp4HI	GCNGC	4 cut(s)	218, 240, 386, 407
FspBI	CTAG	4 cut(s)	90, 104, 116, 584
GlaI	GCGC	1 cut(s)	292
GluI	GCNGC	4 cut(s)	218, 240, 386, 407
GsaI	CCCAGC	1 cut(s)	79
HaeIII	GGCC	4 cut(s)	272, 343, 416, 501
HapII	CCGG	3 cut(s)	145, 524, 626
HhaI	GCGC	1 cut(s)	293
Hin1II	CATG	4 cut(s)	17, 30, 40, 224
Hin6I	GCGC	1 cut(s)	291
HinP1I	GCGC	1 cut(s)	291
HinfI	GANTC	3 cut(s)	199, 335, 610
HpaII	CCGG	3 cut(s)	145, 524, 626
HphI	GGTGA	3 cut(s)	259, 331, 605
Hpy166II	GTNNAC	1 cut(s)	399
Hpy188I	TCNGA	2 cut(s)	133, 204
Hpy188III	TCNNGA	6 cut(s)	37, 116, 196, 332, 361, 427
Hpy8I	GTNNAC	1 cut(s)	399
Hpy99I	CGWCG	1 cut(s)	137
HpyCH4III	ACNGT	1 cut(s)	642
HpyCH4IV	ACGT	1 cut(s)	126
HpyCH4V	TGCA	3 cut(s)	242, 281, 509
HpyF10VI	GCNNNNNNNGC	3 cut(s)	223, 278, 297
HpyF3I	CTNAG	2 cut(s)	658, 675
HpySE526I	ACGT	1 cut(s)	126
Hsp92II	CATG	4 cut(s)	17, 30, 40, 224
HspAI	GCGC	1 cut(s)	291
KspI	CCGCGG	1 cut(s)	407
Kzo9I	GATC	2 cut(s)	46, 328
LmnI	GCTCC	1 cut(s)	266
Lsp1109I	GCAGC	1 cut(s)	226
LweI	GCATC	1 cut(s)	661
MaeI	CTAG	4 cut(s)	90, 104, 116, 584
MaeII	ACGT	1 cut(s)	126
MaeIII	GTNAC	3 cut(s)	193, 556, 632
MalI	GATC	2 cut(s)	48, 330
MboI	GATC	2 cut(s)	46, 328
MboII	GAAGA	2 cut(s)	338, 442
MhlI	GDGCHC	1 cut(s)	76
MmeI	TCCRAC	2 cut(s)	110, 156
MnlI	CCTC	8 cut(s)	262, 315, 333, 354, 456, 512, 583, 626
Mph1103I	ATGCAT	1 cut(s)	283
MseI	TTAA	2 cut(s)	452, 540
MspA1I	CMGCKG	1 cut(s)	406
MspI	CCGG	3 cut(s)	145, 524, 626
MspR9I	CCNGG	1 cut(s)	552
Mva1269I	GAATGC	1 cut(s)	283
MvaI	CCWGG	1 cut(s)	552
MvnI	CGCG	1 cut(s)	406
MwoI	GCNNNNNNNGC	3 cut(s)	223, 278, 297
NdeII	GATC	2 cut(s)	46, 328
NheI	GCTAGC	1 cut(s)	583
NlaIII	CATG	4 cut(s)	17, 30, 40, 224
NlaIV	GGNNCC	1 cut(s)	522
NmuCI	GTSAC	3 cut(s)	193, 556, 632
NsiI	ATGCAT	1 cut(s)	283
NspI	RCATGY	2 cut(s)	30, 224
PaeI	GCATGC	1 cut(s)	30
PagI	TCATGA	1 cut(s)	36
PceI	AGGCCT	1 cut(s)	343
PcsI	WCGNNNNNNNCGW	1 cut(s)	132
PctI	GAATGC	1 cut(s)	283
PfeI	GAWTC	3 cut(s)	199, 335, 610
PkrI	GCNGC	4 cut(s)	219, 241, 387, 408
Psp6I	CCWGG	1 cut(s)	550
PspFI	CCCAGC	1 cut(s)	75
PspGI	CCWGG	1 cut(s)	550
PspN4I	GGNNCC	1 cut(s)	522
PspPI	GGNCC	1 cut(s)	548
RsaI	GTAC	3 cut(s)	94, 183, 398
RsaNI	GTAC	3 cut(s)	93, 182, 397
SacII	CCGCGG	1 cut(s)	407
SaqAI	TTAA	2 cut(s)	452, 540
SatI	GCNGC	4 cut(s)	218, 240, 386, 407
Sau3AI	GATC	2 cut(s)	46, 328
Sau96I	GGNCC	1 cut(s)	548
ScaI	AGTACT	1 cut(s)	94
ScrFI	CCNGG	1 cut(s)	552
SduI	GDGCHC	1 cut(s)	76
SetI	ASST	8 cut(s)	81, 129, 263, 326, 360, 540, 546, 618
SfaNI	GCATC	1 cut(s)	661
Sfr303I	CCGCGG	1 cut(s)	407
SgrBI	CCGCGG	1 cut(s)	407
SinI	GGWCC	1 cut(s)	548
SpeI	ACTAGT	2 cut(s)	89, 103
SphI	GCATGC	1 cut(s)	30
SseBI	AGGCCT	1 cut(s)	343
SsiI	CCGC	5 cut(s)	148, 218, 386, 404, 406
SspMI	CTAG	4 cut(s)	90, 104, 116, 584
StuI	AGGCCT	1 cut(s)	343
StyD4I	CCNGG	1 cut(s)	550
StyI	CCWWGG	1 cut(s)	544
TaaI	ACNGT	1 cut(s)	642
TaiI	ACGT	1 cut(s)	129
TaqI	TCGA	5 cut(s)	49, 338, 426, 457, 529
TatI	WGTACW	2 cut(s)	92, 396
TauI	GCSGC	3 cut(s)	220, 388, 409
TfiI	GAWTC	3 cut(s)	199, 335, 610
Tru1I	TTAA	2 cut(s)	452, 540
Tru9I	TTAA	2 cut(s)	452, 540
TscAI	CASTG	1 cut(s)	481
TseFI	GTSAC	3 cut(s)	193, 556, 632
TseI	GCWGC	1 cut(s)	239
Tsp45I	GTSAC	3 cut(s)	193, 556, 632
TspDTI	ATGAA	2 cut(s)	25, 666
TspGWI	ACGGA	1 cut(s)	339
TspRI	CASTG	1 cut(s)	481
VpaK11BI	GGWCC	1 cut(s)	548
XbaI	TCTAGA	1 cut(s)	115
XceI	RCATGY	2 cut(s)	30, 224
XspI	CTAG	4 cut(s)	90, 104, 116, 584
ZrmI	AGTACT	1 cut(s)	94
Zsp2I	ATGCAT	1 cut(s)	283

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.