FvH4_2g07790

Belongs to the helicase family. Dicer subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0001909
Physical Location & Seq
Reverse (-)
6722071 .. 6725093
3023 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g07790.t1

Sequence Viewer

Length: 2796 bp
ATGATAATGAATTCAAAACGCAAAGAGCCTACTTCTGGTGCAGGAACAACTAAAAGGAAGGAACTACATGGCACAACTAGCATTCGCGCGCTGTCTGGAACAAGGGGAGAAAAACTTGATGGTGCCGTCTTTTATGGCTATAAATTCGACTTCCCATGTGACATCGCTACTGAGCTATATTCTGGACTTATTTTTCTGATCGAGTCGGAGCTTGCTGAGGATGTGGGGAATACCGAGTTGGAGCTTTACTTGAAATCAAGTAGAGTTAAGGCTTCTATTTCTTCCTGTGGGGAAGTTCATTTGGATGGAGAACAGATGGCAAAAGCAAAGCTCTTCCAGGAATTTTTCTTTAATGGATTGTTTGCAAAATTGTTCCATCCGACTGGAAAAGAGAGAGAGTTTTTACTTAAGAAGGAAACAAGAAGCTTGTGGAGGCAATCATACATGTATTTGGTTCTTCCACATGAGAAATTGAATCAATCTTGGGGAATAAATTGGAGTGGGATTAATTCTTGTGTTTCTGCCGTAGAATTCTTGAAGCAAAATGTACTGCTAGGTGCTCAGCATTGCAATGGTGACCCAAGGAAGTCATTATCAAGCACAAGTTGCTCATCTGGATCTGGGATATTCCACTTAGCTGATTGCTCAGTTGATGAAAAAAATCTCAACGATATGGTGGTAGTGGCCATCCACAATGGAAATGTATATTCTGTTTTCGAGGTTTTGAGTGACACATCTGCCGAGAGTCCTTTTGAATCATCACGATACAGCTCCTATGCTGATTACTTCCACAAAAGATATGGGGTTGTGCTCAAGTATCCAGGTCAACCTCTGTTGCGGTTGAAGCAAAGCCATAATCCACATAATCTTCTCCTGAACTTCAATGGTGAAGTTGGCCGTGTTAATGGAAAGGAACATAGTATGTATGCCCATATGCCTCCTGAGCTTCTAGTCTATACCGGTGTTCGAAGAGATGTTTTAAAGTCATTTTATCTACTACCATCATTGATTCATCGCTTGGAATCCTTGATCTTAGCCAGCCAACTCAGAGAAGAGATTAGTAGTGGTCATCCTAGCAGCTTACAGATATCAAGCTCATTGATCCTAGAAGCACTAACATCAATTCGTTGCAGTGAAGATTTTTCCATGGAGCGTTTGGAATTGCTTGGCGATTCAGTCCTAAAGTATGCTATAGGCTGCCACCTTTTCCTAAAATATCCCAACAAACATGAAGGAGAATTAACTTCTCTGCGGCAGTCTGTAATTTGTAATGCAAACCTGCATAAACTAGGAATAGGCCGAAGCTTACAGGGATATATTCGTGATGGTGCTTTTGATCCGCGCCGTTGGGTTGGTCCGGGACAGCTCTCTGTAAGACCTGTTCCTTGTGAGTGTGGAGTGGATAGTTTAGAAGTACCGGTAGATAGCAAGTTTCAAACCAGCAGCGAGGTTGTGGTTGGCAAGTGCTGTGATAAGGGCCATAGATGGATGGGTTCAAAAACATTCTCTGATTGTGTTGAAGCACTTATAGGAGCTTATTATGTAAGTGGTGGATTGCCTGCTGCAGTTCATTTTATGAAGTGGCTCGGCATTGATGTAGAACTTGAGCCAACCTTGGTTTTGGAAGCAATTGCTACTGCATCACTTCATTCTTACAATGCTACAGTGGATGATGAGATTGGAATCCTAGAGTCAAAGCTTGGTTATGTGTTTTCTACCAAAAGTCTCCTACATAAGGCAACAACACATGCATCTGAGCAAGGCTACTCTTATGAAAGACTAGAATTTCTTGGTGATTGTGTGTTGGATCTGCTTATCACATGGCATTTCTATCAGAACCACAAAGATATTGATCCAGGCGAGTTGACAGACTTGCGTGCAGCTTCAGTTAACAATGGATACTTTGCTCAAGTTGCTGTTAGACACAACCTTCAACAGCATCTACAACATTGTTCTGGGTTTCTTCAAAGTCAAATAACAGAATATGCTAACTCCCTATCTGAACATGACAATGATATCAAACTACAAGGCACAAAAGGCCCCAAGGCTCTTGGAGACATGGTGGAAAGTATTGCCGGGGCAATACTAATCGACACTGAGCTAAATCTCGATGAAGTGTGGAGAGTATACAGACCATTATTATCTCCAATTGTGACTCCTGAAAAACTTGAGCTGCCTCCCTTGCGTGAACTGATTGAACTATGTGGCTCGCTTGGCTACTTTTATAAAGAAGAAACTGAAAAGAAGGGTGAAACAGTTCATGCAAAGCTTAGTGTACAGCTGAAAGATGATTTGTTAATTGGGGAGGGTAATGAAAGGACTAAGAAAGCTGCAAAAGGAGAAGCAGCTCATCGTTTATTGAAGGAGCTTGAGAAAAGAGACATTACGTATTCCGGTTCTGCTAAGAAGGGAAAAAGGAATGCTGATCTAGTTGATGATTCATCTCCAACAAAACGAAAGAAAACTGAAACCCTGCCTATAGAGAATATTGACAGAAAATTAAGTAGTCTGAAAAATGAGGATGTACCAGTTATCAAAGCTATCAACATGAAGAAAGGAGGACCTCGAATCTCGCTTTTCGAGCTGTGCAAGAAATTACAGTGGCAAATGCCGAGCTTCAAATCAACAGAAAAGGAATGCAGTTTTGTATCGAATATAACCTTGTACATACCTAACTTGGGCGAGATTGAGTGCACAGGAGATCCTAAGTCAGATAAGAAGAGTTCACTAGACTCTGCAGCACTTGCCATGCTTCTTGATCTCAGAAGGCAGGGTAAGATTATCATTGGTGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0002252 GO:0002376 GO:0003674 GO:0003676 GO:0003723 GO:0003725 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004525 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006259 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009615 GO:0009616 GO:0009892 GO:0009987 GO:0010033 GO:0010216 GO:0010267 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016246 GO:0016441 GO:0016442 GO:0016458 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0031332 GO:0031974 GO:0031981 GO:0032296 GO:0032991 GO:0034641 GO:0035194 GO:0035821 GO:0040029 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043331 GO:0044003 GO:0044237 GO:0044238 GO:0044260 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045087 GO:0046483 GO:0048519 GO:0050789 GO:0050896 GO:0051214 GO:0051607 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0052018 GO:0052249 GO:0060255 GO:0065007 GO:0070013 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0098542 GO:0098586 GO:0140098 GO:1901360 GO:1901363 GO:1901698 GO:1901699 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko05206 map05206
Pfam Domains
Protein Families
DEAD Dicer_dimer Helicase_C PAZ ResIII Ribonuclease_3 dsrm

Protein Analysis

932

Amino Acids

103.77

Weight (kDa)

6.53

Isoelectric Point (pI)

44.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAZ PF02170 219 - 322 1.3e-11 PAZ domain
Ribonucleas_3_3 PF14622 383 - 441 1.2e-06 Ribonuclease-III-like
Ribonuclease_3 PF00636 384 - 518 1.3e-18 Ribonuclease III domain
Ribonucleas_3_3 PF14622 574 - 698 8.2e-12 Ribonuclease-III-like
Ribonuclease_3 PF00636 592 - 699 1.2e-18 Ribonuclease III domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2226
Acc36I ACCTGC 1 cut(s) 1287
AccB1I GGYRCC 1 cut(s) 122
AccI GTMKAC 1 cut(s) 2127
AccII CGCG 3 cut(s) 87, 89, 1342
AciI CCGC 3 cut(s) 838, 1252, 1340
AclWI GGATC 6 cut(s) 625, 1096, 1331, 1815, 1847, 2696
AcoI YGGCCR 2 cut(s) 684, 895
AcsI RAATTY 5 cut(s) 10, 143, 341, 530, 1784
AcuI CTGAAG 1 cut(s) 1869
AfaI GTAC 5 cut(s) 549, 1416, 2277, 2526, 2666
AfiI CCNNNNNNNGG 3 cut(s) 35, 1735, 2678
AflII CTTAAG 1 cut(s) 407
AflIII ACRYGT 1 cut(s) 444
AgeI ACCGGT 2 cut(s) 959, 1417
AjnI CCWGG 3 cut(s) 336, 820, 1855
AjuI GAANNNNNNNTTGG 2 cut(s) 221, 253
Alw21I GWGCWC 3 cut(s) 562, 813, 2696
Alw26I GTCTC 3 cut(s) 1730, 2049, 2373
Alw44I GTGCAC 1 cut(s) 2692
AlwI GGATC 6 cut(s) 625, 1096, 1331, 1815, 1847, 2696
AoxI GGCC 5 cut(s) 684, 895, 1297, 1477, 2038
ApaLI GTGCAC 1 cut(s) 2692
ApeKI GCWGC 9 cut(s) 1077, 1197, 1443, 1562, 1880, 2173, 2330, 2345, 2738
ApoI RAATTY 5 cut(s) 10, 143, 341, 530, 1784
AseI ATTAAT 1 cut(s) 507
AsiGI ACCGGT 2 cut(s) 959, 1417
Asp700I GAANNNNTTC 1 cut(s) 2256
AspLEI GCGC 3 cut(s) 89, 91, 1344
AspS9I GGNCC 4 cut(s) 1355, 1477, 2039, 2561
AsuC2I CCSGG 2 cut(s) 1359, 2077
AsuHPI GGTGA 4 cut(s) 587, 899, 1805, 2261
AsuII TTCGAA 1 cut(s) 967
AvaII GGWCC 2 cut(s) 1355, 2561
BaeGI GKGCMC 1 cut(s) 2696
BalI TGGCCA 1 cut(s) 686
BanI GGYRCC 1 cut(s) 122
Bbv12I GWGCWC 3 cut(s) 562, 813, 2696
BbvCI CCTCAGC 1 cut(s) 216
BbvI GCAGC 9 cut(s) 1089, 1184, 1455, 1549, 1892, 2160, 2317, 2357, 2750
BccI CCATC 9 cut(s) 113, 299, 310, 384, 695, 1009, 1319, 1479, 1483
BceAI ACGGC 4 cut(s) 110, 509, 882, 1329
BciT130I CCWGG 3 cut(s) 338, 822, 1857
BciVI GTATCC 2 cut(s) 828, 1892
BcnI CCSGG 2 cut(s) 1359, 2077
BcoDI GTCTC 3 cut(s) 1730, 2049, 2373
BfmI CTRYAG 5 cut(s) 1191, 1563, 1662, 2478, 2736
BfrI CTTAAG 1 cut(s) 407
BfuAI ACCTGC 1 cut(s) 1287
BfuI GTATCC 2 cut(s) 828, 1892
BlpI GCTNAGC 1 cut(s) 561
Bme1390I CCNGG 5 cut(s) 338, 822, 1359, 1857, 2077
Bme18I GGWCC 2 cut(s) 1355, 2561
BmgT120I GGNCC 4 cut(s) 1355, 1477, 2039, 2561
BmiI GGNNCC 2 cut(s) 124, 2041
BmrFI CCNGG 5 cut(s) 338, 822, 1359, 1857, 2077
BmsI GCATC 3 cut(s) 1649, 1760, 1948
Bpu10I CCTNAGC 2 cut(s) 216, 942
Bpu1102I GCTNAGC 1 cut(s) 561
Bpu14I TTCGAA 1 cut(s) 967
BpuEI CTTGAG 5 cut(s) 797, 1625, 1893, 2189, 2390
BpuMI CCSGG 2 cut(s) 1359, 2077
BsaAI YACGTR 1 cut(s) 2388
BsaBI GATNNNNATC 2 cut(s) 1682, 1851
BsaJI CCNNGG 5 cut(s) 581, 1146, 1614, 2043, 2076
BsaWI WCCGGW 3 cut(s) 959, 1417, 2393
BsaXI ACNNNNNCTCC 2 cut(s) 2046, 2076
Bsc4I CCNNNNNNNGG 3 cut(s) 35, 1735, 2678
Bse118I RCCGGY 2 cut(s) 959, 1417
Bse1I ACTGG 2 cut(s) 388, 2528
Bse3DI GCAATG 2 cut(s) 565, 577
Bse8I GATNNNNATC 2 cut(s) 1682, 1851
BseBI CCWGG 3 cut(s) 338, 822, 1857
BseDI CCNNGG 5 cut(s) 581, 1146, 1614, 2043, 2076
BseGI GGATG 8 cut(s) 226, 310, 376, 687, 1069, 1494, 1675, 2527
BseJI GATNNNNATC 2 cut(s) 1682, 1851
BseLI CCNNNNNNNGG 3 cut(s) 35, 1735, 2678
BseMI GCAATG 2 cut(s) 565, 577
BseMII CTCAG 9 cut(s) 162, 207, 575, 660, 933, 1060, 1746, 2088, 2776
BseNI ACTGG 2 cut(s) 388, 2528
BsePI GCGCGC 1 cut(s) 87
BseSI GKGCMC 1 cut(s) 2696
BseXI GCAGC 9 cut(s) 1089, 1184, 1455, 1549, 1892, 2160, 2317, 2357, 2750
BsgI GTGCAG 2 cut(s) 60, 1899
Bsh1236I CGCG 3 cut(s) 87, 89, 1342
BshFI GGCC 5 cut(s) 686, 897, 1299, 1479, 2040
BshNI GGYRCC 1 cut(s) 122
BshTI ACCGGT 2 cut(s) 959, 1417
BsiHKAI GWGCWC 3 cut(s) 562, 813, 2696
BsiSI CCGG 5 cut(s) 960, 1358, 1418, 2076, 2394
BslFI GGGAC 1 cut(s) 1374
BslI CCNNNNNNNGG 3 cut(s) 35, 1735, 2678
BsmAI GTCTC 3 cut(s) 1730, 2049, 2373
BsmFI GGGAC 1 cut(s) 1374
BsmI GAATGC 3 cut(s) 81, 2425, 2642
BsnI GGCC 5 cut(s) 686, 897, 1299, 1479, 2040
Bsp119I TTCGAA 1 cut(s) 967
Bsp1286I GDGCHC 3 cut(s) 562, 813, 2696
Bsp1407I TGTACA 2 cut(s) 2275, 2664
Bsp1720I GCTNAGC 1 cut(s) 561
Bsp19I CCATGG 1 cut(s) 1146
BspACI CCGC 3 cut(s) 838, 1252, 1340
BspANI GGCC 5 cut(s) 686, 897, 1299, 1479, 2040
BspCNI CTCAG 9 cut(s) 163, 208, 574, 659, 934, 1059, 1747, 2089, 2775
BspFNI CGCG 3 cut(s) 87, 89, 1342
BspLI GGNNCC 2 cut(s) 124, 2041
BspMAI CTGCAG 2 cut(s) 1567, 2740
BspMI ACCTGC 1 cut(s) 1287
BspPI GGATC 6 cut(s) 625, 1096, 1331, 1815, 1847, 2696
BspQI GCTCTTC 1 cut(s) 338
BspT104I TTCGAA 1 cut(s) 967
BspT107I GGYRCC 1 cut(s) 122
BspTI CTTAAG 1 cut(s) 407
BsrDI GCAATG 2 cut(s) 565, 577
BsrFI RCCGGY 2 cut(s) 959, 1417
BsrGI TGTACA 2 cut(s) 2275, 2664
BsrI ACTGG 2 cut(s) 388, 2528
BssAI RCCGGY 2 cut(s) 959, 1417
BssECI CCNNGG 5 cut(s) 581, 1146, 1614, 2043, 2076
BssHII GCGCGC 1 cut(s) 87
BssNAI GTATAC 1 cut(s) 2128
BssT1I CCWWGG 4 cut(s) 581, 1146, 1614, 2043
Bst1107I GTATAC 1 cut(s) 2128
Bst2UI CCWGG 3 cut(s) 338, 822, 1857
Bst4CI ACNGT 3 cut(s) 1666, 2257, 2601
Bst6I CTCTTC 4 cut(s) 338, 964, 1047, 2714
BstAFI CTTAAG 1 cut(s) 407
BstAPI GCANNNNNTGC 2 cut(s) 606, 2744
BstAUI TGTACA 2 cut(s) 2275, 2664
BstBAI YACGTR 1 cut(s) 2388
BstBI TTCGAA 1 cut(s) 967
BstC8I GCNNGC 6 cut(s) 89, 213, 1039, 1560, 1878, 2210
BstDSI CCRYGG 1 cut(s) 1146
BstEII GGTNACC 1 cut(s) 575
BstENI CCTNNNNNAGG 1 cut(s) 1733
BstF5I GGATG 8 cut(s) 226, 310, 376, 687, 1069, 1494, 1675, 2527
BstFNI CGCG 3 cut(s) 87, 89, 1342
BstHHI GCGC 3 cut(s) 89, 91, 1344
BstMAI GTCTC 3 cut(s) 1730, 2049, 2373
BstNI CCWGG 3 cut(s) 338, 822, 1857
BstNSI RCATGY 2 cut(s) 448, 1751
BstPI GGTNACC 1 cut(s) 575
BstSCI CCNGG 5 cut(s) 336, 820, 1357, 1855, 2075
BstSFI CTRYAG 5 cut(s) 1191, 1563, 1662, 2478, 2736
BstSLI GKGCMC 1 cut(s) 2696
BstSNI TACGTA 1 cut(s) 2388
BstUI CGCG 3 cut(s) 87, 89, 1342
BstV1I GCAGC 9 cut(s) 1089, 1184, 1455, 1549, 1892, 2160, 2317, 2357, 2750
BstX2I RGATCY 3 cut(s) 617, 1807, 2701
BstXI CCANNNNNNTGG 1 cut(s) 383
BstYI RGATCY 3 cut(s) 617, 1807, 2701
BstZ17I GTATAC 1 cut(s) 2128
BsuI GTATCC 2 cut(s) 828, 1892
BsuRI GGCC 5 cut(s) 686, 897, 1299, 1479, 2040
BtgI CCRYGG 1 cut(s) 1146
BtgZI GCGATG 2 cut(s) 148, 998
BtsCI GGATG 8 cut(s) 226, 310, 376, 687, 1069, 1494, 1675, 2527
BtsI GCAGTG 1 cut(s) 1138
BtsIMutI CAGTG 4 cut(s) 1138, 1671, 2094, 2606
BveI ACCTGC 1 cut(s) 1287
Cac8I GCNNGC 6 cut(s) 89, 213, 1039, 1560, 1878, 2210
CfoI GCGC 3 cut(s) 89, 91, 1344
Cfr10I RCCGGY 2 cut(s) 959, 1417
Cfr13I GGNCC 4 cut(s) 1355, 1477, 2039, 2561
Csp6I GTAC 5 cut(s) 548, 1415, 2276, 2525, 2665
CspAI ACCGGT 2 cut(s) 959, 1417
CviQI GTAC 5 cut(s) 548, 1415, 2276, 2525, 2665
DraI TTTAAA 1 cut(s) 981
EaeI YGGCCR 2 cut(s) 684, 895
Eam1104I CTCTTC 4 cut(s) 338, 964, 1047, 2714
EarI CTCTTC 4 cut(s) 338, 964, 1047, 2714
Eco105I TACGTA 1 cut(s) 2388
Eco130I CCWWGG 4 cut(s) 581, 1146, 1614, 2043
Eco32I GATATC 2 cut(s) 1089, 2017
Eco47I GGWCC 2 cut(s) 1355, 2561
Eco57I CTGAAG 1 cut(s) 1869
Eco91I GGTNACC 1 cut(s) 575
EcoNI CCTNNNNNAGG 1 cut(s) 1733
EcoO109I RGGNCCY 2 cut(s) 2039, 2561
EcoO65I GGTNACC 1 cut(s) 575
EcoRI GAATTC 2 cut(s) 10, 530
EcoRII CCWGG 3 cut(s) 336, 820, 1855
EcoRV GATATC 2 cut(s) 1089, 2017
EcoT14I CCWWGG 4 cut(s) 581, 1146, 1614, 2043
EcoT22I ATGCAT 1 cut(s) 1753
ErhI CCWWGG 4 cut(s) 581, 1146, 1614, 2043
FaqI GGGAC 1 cut(s) 1374
FauNDI CATATG 1 cut(s) 933
FblI GTMKAC 1 cut(s) 2127
FokI GGATG 8 cut(s) 233, 317, 363, 674, 1056, 1501, 1682, 2534
GlaI GCGC 3 cut(s) 88, 90, 1343
HaeIII GGCC 5 cut(s) 686, 897, 1299, 1479, 2040
HapII CCGG 5 cut(s) 960, 1358, 1418, 2076, 2394
HhaI GCGC 3 cut(s) 89, 91, 1344
Hin6I GCGC 3 cut(s) 87, 89, 1342
HinP1I GCGC 3 cut(s) 87, 89, 1342
HincII GTYRAC 3 cut(s) 827, 1866, 1891
HindII GTYRAC 3 cut(s) 827, 1866, 1891
HindIII AAGCTT 4 cut(s) 424, 1303, 1697, 2267
HpaI GTTAAC 1 cut(s) 1891
HpaII CCGG 5 cut(s) 960, 1358, 1418, 2076, 2394
HphI GGTGA 4 cut(s) 587, 899, 1805, 2261
Hpy166II GTNNAC 8 cut(s) 827, 1866, 1891, 2128, 2189, 2276, 2694, 2726
Hpy8I GTNNAC 8 cut(s) 827, 1866, 1891, 2128, 2189, 2276, 2694, 2726
HpyAV CCTTC 8 cut(s) 52, 406, 1226, 1940, 2239, 2356, 2401, 2760
HpyCH4III ACNGT 3 cut(s) 1666, 2257, 2601
HpyCH4IV ACGT 1 cut(s) 2387
HpySE526I ACGT 1 cut(s) 2387
HspAI GCGC 3 cut(s) 87, 89, 1342
KspAI GTTAAC 1 cut(s) 1891
LguI GCTCTTC 1 cut(s) 338
LmnI GCTCC 6 cut(s) 208, 241, 776, 1150, 1532, 2365
Lsp1109I GCAGC 9 cut(s) 1089, 1184, 1455, 1549, 1892, 2160, 2317, 2357, 2750
LweI GCATC 3 cut(s) 1649, 1760, 1948
MaeII ACGT 1 cut(s) 2387
MaeIII GTNAC 4 cut(s) 158, 575, 728, 2152
MfeI CAATTG 2 cut(s) 1629, 2148
MflI RGATCY 3 cut(s) 617, 1807, 2701
MhlI GDGCHC 3 cut(s) 562, 813, 2696
MlsI TGGCCA 1 cut(s) 686
MluNI TGGCCA 1 cut(s) 686
MlyI GAGTC 5 cut(s) 212, 754, 1700, 2149, 2726
MmeI TCCRAC 5 cut(s) 186, 219, 404, 1785, 2471
Mox20I TGGCCA 1 cut(s) 686
Mph1103I ATGCAT 1 cut(s) 1753
MroXI GAANNNNTTC 1 cut(s) 2256
MscI TGGCCA 1 cut(s) 686
MslI CAYNNNNRTG 3 cut(s) 303, 570, 2010
Msp20I TGGCCA 1 cut(s) 686
MspA1I CMGCKG 1 cut(s) 2281
MspCI CTTAAG 1 cut(s) 407
MspI CCGG 5 cut(s) 960, 1358, 1418, 2076, 2394
MspR9I CCNGG 5 cut(s) 338, 822, 1359, 1857, 2077
MunI CAATTG 2 cut(s) 1629, 2148
Mva1269I GAATGC 3 cut(s) 81, 2425, 2642
MvaI CCWGG 3 cut(s) 338, 822, 1857
MvnI CGCG 3 cut(s) 87, 89, 1342
NciI CCSGG 2 cut(s) 1359, 2077
NcoI CCATGG 1 cut(s) 1146
NdeI CATATG 1 cut(s) 933
NlaIV GGNNCC 2 cut(s) 124, 2041
NmeAIII GCCGAG 3 cut(s) 766, 1566, 2637
NmuCI GTSAC 4 cut(s) 158, 575, 728, 2152
NsiI ATGCAT 1 cut(s) 1753
NspI RCATGY 2 cut(s) 448, 1751
NspV TTCGAA 1 cut(s) 967
PauI GCGCGC 1 cut(s) 87
PciI ACATGT 1 cut(s) 444
PciSI GCTCTTC 1 cut(s) 338
PctI GAATGC 3 cut(s) 81, 2425, 2642
PdmI GAANNNNTTC 1 cut(s) 2256
PfeI GAWTC 8 cut(s) 475, 755, 1009, 1022, 1172, 1683, 2438, 2568
PfoI TCCNGGA 2 cut(s) 336, 1357
PinAI ACCGGT 2 cut(s) 959, 1417
PleI GAGTC 5 cut(s) 211, 753, 1699, 2149, 2726
PpsI GAGTC 5 cut(s) 211, 753, 1699, 2149, 2726
Ppu21I YACGTR 1 cut(s) 2388
PpuMI RGGWCCY 1 cut(s) 2561
PscI ACATGT 1 cut(s) 444
PshBI ATTAAT 1 cut(s) 507
PsiI TTATAA 1 cut(s) 2226
Psp5II RGGWCCY 1 cut(s) 2561
Psp6I CCWGG 3 cut(s) 336, 820, 1855
PspEI GGTNACC 1 cut(s) 575
PspGI CCWGG 3 cut(s) 336, 820, 1855
PspN4I GGNNCC 2 cut(s) 124, 2041
PspPI GGNCC 4 cut(s) 1355, 1477, 2039, 2561
PspPPI RGGWCCY 1 cut(s) 2561
PsrI GAACNNNNNNTAC 2 cut(s) 1365, 1397
PstI CTGCAG 2 cut(s) 1567, 2740
PsuI RGATCY 3 cut(s) 617, 1807, 2701
PteI GCGCGC 1 cut(s) 87
PvuII CAGCTG 1 cut(s) 2281
RsaI GTAC 5 cut(s) 549, 1416, 2277, 2526, 2666
RsaNI GTAC 5 cut(s) 548, 1415, 2276, 2525, 2665
RseI CAYNNNNRTG 3 cut(s) 303, 570, 2010
SapI GCTCTTC 1 cut(s) 338
Sau96I GGNCC 4 cut(s) 1355, 1477, 2039, 2561
SchI GAGTC 5 cut(s) 212, 754, 1700, 2149, 2726
ScrFI CCNGG 5 cut(s) 338, 822, 1359, 1857, 2077
SduI GDGCHC 3 cut(s) 562, 813, 2696
SfaNI GCATC 3 cut(s) 1649, 1760, 1948
SfcI CTRYAG 5 cut(s) 1191, 1563, 1662, 2478, 2736
SfuI TTCGAA 1 cut(s) 967
SinI GGWCC 2 cut(s) 1355, 2561
SmiMI CAYNNNNRTG 3 cut(s) 303, 570, 2010
SmlI CTYRAG 6 cut(s) 407, 812, 1604, 1908, 2168, 2369
SmoI CTYRAG 6 cut(s) 407, 812, 1604, 1908, 2168, 2369
SnaBI TACGTA 1 cut(s) 2388
SsiI CCGC 3 cut(s) 838, 1252, 1340
SspI AATATT 1 cut(s) 2488
StyD4I CCNGG 5 cut(s) 336, 820, 1357, 1855, 2075
StyI CCWWGG 4 cut(s) 581, 1146, 1614, 2043
TaaI ACNGT 3 cut(s) 1666, 2257, 2601
TaiI ACGT 1 cut(s) 2390
TaqI TCGA 9 cut(s) 147, 201, 717, 967, 2091, 2109, 2566, 2580, 2651
TatI WGTACW 3 cut(s) 547, 2275, 2664
TauI GCSGC 1 cut(s) 1255
TfiI GAWTC 8 cut(s) 475, 755, 1009, 1022, 1172, 1683, 2438, 2568
TscAI CASTG 4 cut(s) 1138, 1671, 2101, 2606
TseFI GTSAC 4 cut(s) 158, 575, 728, 2152
TseI GCWGC 9 cut(s) 1077, 1197, 1443, 1562, 1880, 2173, 2330, 2345, 2738
Tsp45I GTSAC 4 cut(s) 158, 575, 728, 2152
TspRI CASTG 4 cut(s) 1138, 1671, 2101, 2606
Vha464I CTTAAG 1 cut(s) 407
VneI GTGCAC 1 cut(s) 2692
VpaK11BI GGWCC 2 cut(s) 1355, 2561
VspI ATTAAT 1 cut(s) 507
XagI CCTNNNNNAGG 1 cut(s) 1733
XapI RAATTY 5 cut(s) 10, 143, 341, 530, 1784
XceI RCATGY 2 cut(s) 448, 1751
XcmI CCANNNNNNNNNTGG 2 cut(s) 797, 1153
XmiI GTMKAC 1 cut(s) 2127
XmnI GAANNNNTTC 1 cut(s) 2256
Zsp2I ATGCAT 1 cut(s) 1753
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.