Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0001909

Physical Location & Seq

Genomic Coordinates Forward (+)

2919459 .. 2923894

Gene Structure 4436 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g03830.12

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1644 bp

ATGGAAGTAGAGGAATCCAATTCCAGCCCCCTCAATCATACCCCCGATGATGACCAGTCACCGCAGTCTTCCAAGAAATTCAGTCCCAGACGGTATCAGTCGGAGGTGTATGAGGTTGCGCGGCGGAAGAACACGATAGCGGTGCTGGAAACCGGTTCCGGGAAGACGATGATAGCTGTGATGCTCATCAGAGACTACGAAGGCTGCCAAACTATTAATTCAAGTAGTGGTGCCAAAAAATTGATTATTTTCTTGGCTCCAACTGTTCATCTTGTTCACCAGCAATTTAAGGTTATTAAAGAAAGCACAAATTGTAGAGTGGGTGAGTATTATGGAGCCTTGGGGGTGGACTCGTGGAACATGGAGTGCTGGGAAAAGGAAATAAATGAGCACGATGTGCTAGTTATGACCCCCCAGATTCTTTTGGATGCCTTAAGAAAGGCATTCTTGAGTTTGGAAGCAGTATGGTTGATGATCGTTGATGAGTGCCATCGGGCTATTGGGAACCATCCATATACAAAGATAATGAAGGAATTTTATCACAAGTCTAGTAAAAAGCCAAAGATTTTTGGTTTGACGGCATCACCTGTTATCAAAAAAGGTGTCTCATCCACAAAGGATTGTGAGGGCCAGTTATCAGAACTTGAAAGCACTTTAGATTCCCAGATTTATACTATTAAGGACATAACAGAGATGGAATTATGTGTCCCCGCTGCAAAAGAAACATGTAGATTTTATGGCCAAACATGGTTTCCATGTTCAGATTTGAAAGAAAAGATGAAAGCCTCTTGGTCCAAGGTTGATGCTTCATTGTCAAAGTTGCAAGAATCAGTAGAAAGTAATGTGAATGACATGGAGGATAAAATTAAGACATTGCGGAAACGAATGTCTAATGACTACACAAAGATCTTGTATTGCCTTGATGACCTTGGTCTCATATGTACTTACGAGGCTGTTAAGATCTGTTTAGAGAATGCTCCGAAGTGCAACGAGGTGATTGAACTTTATAGAGAAGGCTCTTTGCAGTGCAGATGTTTTCTTGAGGAAGTGTTTGGTATAATTAAGGAATCATTTCTGCACGGTTCTGAAAATTTTTTGGATTTCGGGTTTGACTATTTGAAGGCAGTAGATGTGGGCTACATATCTCCAAAATTAAATGAACTTGTTCAAATTTTTCATTCTTTTGGAAGATCTAGGGAAGTACGGTGCCTCGTATTTGTTGATAAAATCATCACAGCTAAAGTGATTGAGAGATTCATTAAGAAAGTTACCTCCCTGTCTCATTTTACGGTTTCCTATTTGACTGGAAGCACTACATCAGTTGATGCTCTGGCGCCGAAAATACAAAAGGAGACATTGGAGTCATTCTGCTCTGGGGCGGTCAATTTATTATTTGCTACCGATGTAGTTGAGGAGGGAATTCATGTTCTGAGCTGCTCCTGTGTGATACGTTTCGACTTGCCAAAGACAGTGCGTAGTTATGTCCAGTCAAGGGGACGAGCTCGGCAAGATAACTCTCAATTCATCACAATGCTGGAGAGGGGAAACAAGAAACAAAGGGATCAACTATATGAGATTGTCAAGAGTGAGTGTTTGCTGACAGATACAGCTGTCAAAAGATCGATCCTGAAGCATGCATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002252 GO:0002376 GO:0003674 GO:0003676 GO:0003723 GO:0003725 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004525 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006259 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009615 GO:0009616 GO:0009892 GO:0009987 GO:0010033 GO:0010216 GO:0010267 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016246 GO:0016441 GO:0016442 GO:0016458 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0031332 GO:0031974 GO:0031981 GO:0032296 GO:0032991 GO:0034641 GO:0035194 GO:0035821 GO:0040029 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043331 GO:0044003 GO:0044237 GO:0044238 GO:0044260 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045087 GO:0046483 GO:0048519 GO:0050789 GO:0050896 GO:0051214 GO:0051607 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0052018 GO:0052249 GO:0060255 GO:0065007 GO:0070013 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0098542 GO:0098586 GO:0140098 GO:1901360 GO:1901363 GO:1901698 GO:1901699 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko05206 map05206

Pfam Domains

Protein Families

DEAD Dicer_dimer Helicase_C PAZ ResIII Ribonuclease_3 dsrm

Protein Analysis

548

Amino Acids

62.19

Weight (kDa)

6.86

Isoelectric Point (pI)

41.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001909)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G43920 AT3G43920 AT3G43920 AT3G43920 AT3G43920 AT3G43920
fragaria_vesca	FvH4_2g07790 FvH4_2g18930 FvH4_2g18930 FvH4_2g30780 FvH4_2g30780 FvH4_2g30780 FvH4_2g30780
malus_domestica	MD08G1046300.v1.1 MD10G1163700.v1.1 MD15G1047500.v1.1
prunus_persica	Prupe.1G401900_v2.0.a1 Prupe.1G401900_v2.0.a1 Prupe.8G202000_v2.0.a1 Prupe.8G202000_v2.0.a1
pyrus_communis	pycom08g03830 pycom08g03840 pycom15g04670
rosa_chinensis	RchiOBHm_Chr6g0284721 RchiOBHm_Chr6g0312121
rosa_laevigata	RLG00000010353 RLG00000012724
rosa_multiflora	Rmu_sc0004065.1_g000007 Rmu_sc0007474.1_g000021
rosa_roxburghii	Rroxscaffold_7G00157050 Rroxscaffold_7G00184440
rosa_rugosa	Rorug06G0165900 Rorug06G0392600 Rorug06G0392700 Rorug06G0392800
rosa_samantha	Rh4CG118000 Rh6AG279000 Rh6AG509700 Rh6BG279000 Rh6BG520600 Rh6CG281300 Rh6CG526600 Rh6DG274000 Rh6DG512000
rosa_wichuraiana	Rw6G023980 Rw6G044350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1360
AccB1I	GGYRCC	3 cut(s)	230, 1206, 1333
AccII	CGCG	1 cut(s)	121
AciI	CCGC	7 cut(s)	62, 121, 124, 140, 711, 877, 1379
AclWI	GGATC	2 cut(s)	1569, 1618
AcoI	YGGCCR	1 cut(s)	739
AcsI	RAATTY	5 cut(s)	77, 533, 1090, 1170, 1419
AcyI	GRCGYC	1 cut(s)	1334
AdeI	CACNNNGTG	1 cut(s)	397
AfaI	GTAC	2 cut(s)	943, 1203
AfiI	CCNNNNNNNGG	2 cut(s)	159, 1492
AflII	CTTAAG	1 cut(s)	433
AflIII	ACRYGT	1 cut(s)	725
AgeI	ACCGGT	1 cut(s)	152
AgsI	TTSAA	6 cut(s)	222, 647, 769, 1001, 1120, 1169
AjuI	GAANNNNNNNTTGG	2 cut(s)	735, 767
AloI	GAACNNNNNNTCC	2 cut(s)	1410, 1442
AluBI	AGCT	5 cut(s)	176, 1238, 1434, 1502, 1610
AluI	AGCT	5 cut(s)	176, 1238, 1434, 1502, 1610
Alw21I	GWGCWC	2 cut(s)	393, 1504
Alw26I	GTCTC	5 cut(s)	186, 610, 938, 1284, 1346
AlwI	GGATC	2 cut(s)	1569, 1618
AoxI	GGCC	2 cut(s)	628, 739
ApeKI	GCWGC	3 cut(s)	204, 713, 1434
ApoI	RAATTY	5 cut(s)	77, 533, 1090, 1170, 1419
ArsI	GACNNNNNNTTYG	2 cut(s)	588, 620
AseI	ATTAAT	1 cut(s)	216
AsiGI	ACCGGT	1 cut(s)	152
Asp700I	GAANNNNTTC	2 cut(s)	1071, 1164
AspLEI	GCGC	2 cut(s)	121, 1336
AspS9I	GGNCC	2 cut(s)	628, 792
AsuC2I	CCSGG	1 cut(s)	160
AsuHPI	GGTGA	5 cut(s)	51, 269, 335, 576, 1006
AvaII	GGWCC	1 cut(s)	792
BaeI	ACNNNNGTAYC	2 cut(s)	1596, 1629
BalI	TGGCCA	1 cut(s)	741
BanI	GGYRCC	3 cut(s)	230, 1206, 1333
BanII	GRGCYC	1 cut(s)	1504
BauI	CACGAG	1 cut(s)	352
BbsI	GAAGAC	2 cut(s)	60, 170
Bbv12I	GWGCWC	2 cut(s)	393, 1504
BbvI	GCAGC	3 cut(s)	191, 700, 1421
BccI	CCATC	3 cut(s)	498, 516, 688
BceAI	ACGGC	1 cut(s)	594
BcgI	CGANNNNNNTGC	2 cut(s)	124, 158
BcnI	CCSGG	1 cut(s)	160
BcoDI	GTCTC	5 cut(s)	186, 610, 938, 1284, 1346
BfaI	CTAG	3 cut(s)	401, 549, 1194
BfoI	RGCGCY	1 cut(s)	1337
BfrI	CTTAAG	1 cut(s)	433
BglII	AGATCT	3 cut(s)	906, 960, 1190
BisI	GCNGC	4 cut(s)	122, 205, 714, 1435
BlsI	GCNGC	4 cut(s)	123, 206, 715, 1436
Bme1390I	CCNGG	1 cut(s)	160
Bme18I	GGWCC	1 cut(s)	792
BmgT120I	GGNCC	2 cut(s)	628, 792
BmiI	GGNNCC	7 cut(s)	157, 232, 258, 337, 506, 1208, 1335
BmrFI	CCNGG	1 cut(s)	160
BmsI	GCATC	5 cut(s)	171, 418, 590, 793, 1315
BoxI	GACNNNNGTC	1 cut(s)	930
BpiI	GAAGAC	2 cut(s)	60, 170
BpmI	CTGGAG	1 cut(s)	1556
BpuEI	CTTGAG	2 cut(s)	469, 1061
BpuMI	CCSGG	1 cut(s)	160
Bsa29I	ATCGAT	1 cut(s)	1622
BsaBI	GATNNNNATC	1 cut(s)	185
BsaHI	GRCGYC	1 cut(s)	1334
BsaI	GGTCTC	1 cut(s)	938
BsaJI	CCNNGG	3 cut(s)	339, 795, 928
BsaWI	WCCGGW	1 cut(s)	152
Bsc4I	CCNNNNNNNGG	2 cut(s)	159, 1492
Bse118I	RCCGGY	1 cut(s)	152
Bse1I	ACTGG	4 cut(s)	55, 631, 1309, 1486
Bse3DI	GCAATG	1 cut(s)	872
Bse8I	GATNNNNATC	1 cut(s)	185
BseCI	ATCGAT	1 cut(s)	1622
BseDI	CCNNGG	3 cut(s)	339, 795, 928
BseGI	GGATG	3 cut(s)	433, 508, 608
BseJI	GATNNNNATC	1 cut(s)	185
BseLI	CCNNNNNNNGG	2 cut(s)	159, 1492
BseMI	GCAATG	1 cut(s)	872
BseMII	CTCAG	1 cut(s)	1421
BseNI	ACTGG	4 cut(s)	55, 631, 1309, 1486
BseRI	GAGGAG	1 cut(s)	1427
BseXI	GCAGC	3 cut(s)	191, 700, 1421
BseYI	CCCAGC	1 cut(s)	369
BsgI	GTGCAG	2 cut(s)	1048, 1061
Bsh1236I	CGCG	1 cut(s)	121
BshFI	GGCC	2 cut(s)	630, 741
BshNI	GGYRCC	3 cut(s)	230, 1206, 1333
BshTI	ACCGGT	1 cut(s)	152
BshVI	ATCGAT	1 cut(s)	1622
BsiHKAI	GWGCWC	2 cut(s)	393, 1504
BsiSI	CCGG	2 cut(s)	153, 159
BslFI	GGGAC	3 cut(s)	69, 692, 1509
BslI	CCNNNNNNNGG	2 cut(s)	159, 1492
BsmAI	GTCTC	5 cut(s)	186, 610, 938, 1284, 1346
BsmFI	GGGAC	3 cut(s)	69, 692, 1509
BsmI	GAATGC	2 cut(s)	443, 979
BsnI	GGCC	2 cut(s)	630, 741
Bso31I	GGTCTC	1 cut(s)	938
Bsp1286I	GDGCHC	2 cut(s)	393, 1504
Bsp143I	GATC	7 cut(s)	474, 906, 960, 1190, 1561, 1619, 1623
BspACI	CCGC	7 cut(s)	62, 121, 124, 140, 711, 877, 1379
BspANI	GGCC	2 cut(s)	630, 741
BspCNI	CTCAG	1 cut(s)	1422
BspDI	ATCGAT	1 cut(s)	1622
BspFNI	CGCG	1 cut(s)	121
BspLI	GGNNCC	7 cut(s)	157, 232, 258, 337, 506, 1208, 1335
BspPI	GGATC	2 cut(s)	1569, 1618
BspT107I	GGYRCC	3 cut(s)	230, 1206, 1333
BspTI	CTTAAG	1 cut(s)	433
BspTNI	GGTCTC	1 cut(s)	938
BsrDI	GCAATG	1 cut(s)	872
BsrFI	RCCGGY	1 cut(s)	152
BsrI	ACTGG	4 cut(s)	55, 631, 1309, 1486
BssAI	RCCGGY	1 cut(s)	152
BssECI	CCNNGG	3 cut(s)	339, 795, 928
BssMI	GATC	7 cut(s)	474, 906, 960, 1190, 1561, 1619, 1623
BssNI	GRCGYC	1 cut(s)	1334
BssSI	CACGAG	1 cut(s)	352
BssT1I	CCWWGG	3 cut(s)	339, 795, 928
Bst2BI	CACGAG	1 cut(s)	352
Bst4CI	ACNGT	6 cut(s)	93, 265, 1082, 1206, 1291, 1471
BstACI	GRCGYC	1 cut(s)	1334
BstAFI	CTTAAG	1 cut(s)	433
BstAPI	GCANNNNNTGC	1 cut(s)	397
BstC8I	GCNNGC	1 cut(s)	1635
BstDEI	CTNAG	1 cut(s)	1430
BstF5I	GGATG	3 cut(s)	433, 508, 608
BstFNI	CGCG	1 cut(s)	121
BstH2I	RGCGCY	1 cut(s)	1337
BstHHI	GCGC	2 cut(s)	121, 1336
BstKTI	GATC	7 cut(s)	477, 909, 963, 1193, 1564, 1622, 1626
BstMAI	GTCTC	5 cut(s)	186, 610, 938, 1284, 1346
BstMBI	GATC	7 cut(s)	474, 906, 960, 1190, 1561, 1619, 1623
BstMWI	GCNNNNNNNGC	1 cut(s)	397
BstNSI	RCATGY	2 cut(s)	729, 1637
BstPAI	GACNNNNGTC	1 cut(s)	930
BstSCI	CCNGG	1 cut(s)	158
BstUI	CGCG	1 cut(s)	121
BstV1I	GCAGC	3 cut(s)	191, 700, 1421
BstV2I	GAAGAC	2 cut(s)	60, 170
BstX2I	RGATCY	3 cut(s)	906, 960, 1190
BstYI	RGATCY	3 cut(s)	906, 960, 1190
Bsu15I	ATCGAT	1 cut(s)	1622
BsuRI	GGCC	2 cut(s)	630, 741
BsuTUI	ATCGAT	1 cut(s)	1622
BtsCI	GGATG	3 cut(s)	433, 508, 608
BtsI	GCAGTG	1 cut(s)	1031
BtsIMutI	CAGTG	2 cut(s)	1031, 1476
Cac8I	GCNNGC	1 cut(s)	1635
CfoI	GCGC	2 cut(s)	121, 1336
Cfr10I	RCCGGY	1 cut(s)	152
Cfr13I	GGNCC	2 cut(s)	628, 792
ClaI	ATCGAT	1 cut(s)	1622
Csp6I	GTAC	2 cut(s)	942, 1202
CspAI	ACCGGT	1 cut(s)	152
CviAII	CATG	7 cut(s)	361, 726, 747, 756, 853, 1424, 1634
CviQI	GTAC	2 cut(s)	942, 1202
DdeI	CTNAG	1 cut(s)	1430
DinI	GGCGCC	1 cut(s)	1335
DpnI	GATC	7 cut(s)	476, 908, 962, 1192, 1563, 1621, 1625
DpnII	GATC	7 cut(s)	474, 906, 960, 1190, 1561, 1619, 1623
DraIII	CACNNNGTG	1 cut(s)	397
DrdI	GACNNNNNNGTC	1 cut(s)	1360
DseDI	GACNNNNNNGTC	1 cut(s)	1360
EaeI	YGGCCR	1 cut(s)	739
EciI	GGCGGA	1 cut(s)	139
Ecl136II	GAGCTC	1 cut(s)	1502
Eco130I	CCWWGG	3 cut(s)	339, 795, 928
Eco24I	GRGCYC	1 cut(s)	1504
Eco31I	GGTCTC	1 cut(s)	938
Eco47I	GGWCC	1 cut(s)	792
Eco53kI	GAGCTC	1 cut(s)	1502
EcoICRI	GAGCTC	1 cut(s)	1502
EcoRI	GAATTC	1 cut(s)	1419
EcoT14I	CCWWGG	3 cut(s)	339, 795, 928
EcoT22I	ATGCAT	1 cut(s)	1639
EcoT38I	GRGCYC	1 cut(s)	1504
EgeI	GGCGCC	1 cut(s)	1335
EheI	GGCGCC	1 cut(s)	1335
ErhI	CCWWGG	3 cut(s)	339, 795, 928
FaeI	CATG	7 cut(s)	364, 729, 750, 759, 856, 1427, 1637
FalI	AAGNNNNNCTT	2 cut(s)	431, 463
FaqI	GGGAC	3 cut(s)	69, 692, 1509
FatI	CATG	7 cut(s)	360, 725, 746, 755, 852, 1423, 1633
FauI	CCCGC	1 cut(s)	718
FauNDI	CATATG	1 cut(s)	938
Fnu4HI	GCNGC	4 cut(s)	122, 205, 714, 1435
FokI	GGATG	3 cut(s)	440, 495, 595
FriOI	GRGCYC	1 cut(s)	1504
Fsp4HI	GCNGC	4 cut(s)	122, 205, 714, 1435
FspBI	CTAG	3 cut(s)	401, 549, 1194
GlaI	GCGC	2 cut(s)	120, 1335
GluI	GCNGC	4 cut(s)	122, 205, 714, 1435
GsaI	CCCAGC	1 cut(s)	373
GsuI	CTGGAG	1 cut(s)	1556
HaeII	RGCGCY	1 cut(s)	1337
HaeIII	GGCC	2 cut(s)	630, 741
HapII	CCGG	2 cut(s)	153, 159
HhaI	GCGC	2 cut(s)	121, 1336
Hin1I	GRCGYC	1 cut(s)	1334
Hin1II	CATG	7 cut(s)	364, 729, 750, 759, 856, 1427, 1637
Hin6I	GCGC	2 cut(s)	119, 1334
HinP1I	GCGC	2 cut(s)	119, 1334
HinfI	GANTC	8 cut(s)	14, 350, 418, 659, 827, 1067, 1254, 1361
HpaII	CCGG	2 cut(s)	153, 159
HphI	GGTGA	5 cut(s)	51, 269, 335, 576, 1006
Hpy166II	GTNNAC	2 cut(s)	277, 349
Hpy188I	TCNGA	7 cut(s)	103, 191, 640, 763, 981, 1087, 1431
Hpy188III	TCNNGA	4 cut(s)	448, 1040, 1582, 1627
Hpy8I	GTNNAC	2 cut(s)	277, 349
HpyAV	CCTTC	4 cut(s)	194, 523, 1007, 1114
HpyCH4III	ACNGT	6 cut(s)	93, 265, 1082, 1206, 1291, 1471
HpyCH4IV	ACGT	1 cut(s)	1450
HpyCH4V	TGCA	7 cut(s)	716, 823, 987, 1024, 1029, 1078, 1637
HpyF10VI	GCNNNNNNNGC	1 cut(s)	397
HpyF3I	CTNAG	1 cut(s)	1430
HpySE526I	ACGT	1 cut(s)	1450
Hsp92I	GRCGYC	1 cut(s)	1334
Hsp92II	CATG	7 cut(s)	364, 729, 750, 759, 856, 1427, 1637
HspAI	GCGC	2 cut(s)	119, 1334
KasI	GGCGCC	1 cut(s)	1333
Kzo9I	GATC	7 cut(s)	474, 906, 960, 1190, 1561, 1619, 1623
LmnI	GCTCC	4 cut(s)	262, 335, 982, 1442
Lsp1109I	GCAGC	3 cut(s)	191, 700, 1421
LweI	GCATC	5 cut(s)	171, 418, 590, 793, 1315
MaeI	CTAG	3 cut(s)	401, 549, 1194
MaeII	ACGT	1 cut(s)	1450
MaeIII	GTNAC	2 cut(s)	57, 1267
MalI	GATC	7 cut(s)	476, 908, 962, 1192, 1563, 1621, 1625
MboI	GATC	7 cut(s)	474, 906, 960, 1190, 1561, 1619, 1623
MboII	GAAGA	4 cut(s)	60, 139, 175, 1200
MflI	RGATCY	3 cut(s)	906, 960, 1190
MhlI	GDGCHC	2 cut(s)	393, 1504
MlsI	TGGCCA	1 cut(s)	741
MluNI	TGGCCA	1 cut(s)	741
Mly113I	GGCGCC	1 cut(s)	1334
MlyI	GAGTC	2 cut(s)	344, 1370
MmeI	TCCRAC	2 cut(s)	81, 284
Mox20I	TGGCCA	1 cut(s)	741
Mph1103I	ATGCAT	1 cut(s)	1639
MroXI	GAANNNNTTC	2 cut(s)	1071, 1164
MscI	TGGCCA	1 cut(s)	741
MslI	CAYNNNNRTG	1 cut(s)	1529
Msp20I	TGGCCA	1 cut(s)	741
MspA1I	CMGCKG	2 cut(s)	713, 1610
MspCI	CTTAAG	1 cut(s)	433
MspI	CCGG	2 cut(s)	153, 159
MspR9I	CCNGG	1 cut(s)	160
Mva1269I	GAATGC	2 cut(s)	443, 979
MvnI	CGCG	1 cut(s)	121
MwoI	GCNNNNNNNGC	1 cut(s)	397
NarI	GGCGCC	1 cut(s)	1334
NciI	CCSGG	1 cut(s)	160
NdeI	CATATG	1 cut(s)	938
NdeII	GATC	7 cut(s)	474, 906, 960, 1190, 1561, 1619, 1623
NlaIII	CATG	7 cut(s)	364, 729, 750, 759, 856, 1427, 1637
NlaIV	GGNNCC	7 cut(s)	157, 232, 258, 337, 506, 1208, 1335
NmeAIII	GCCGAG	1 cut(s)	1483
NmuCI	GTSAC	1 cut(s)	57
NsiI	ATGCAT	1 cut(s)	1639
NspI	RCATGY	2 cut(s)	729, 1637
PaeI	GCATGC	1 cut(s)	1637
PciI	ACATGT	1 cut(s)	725
PctI	GAATGC	2 cut(s)	443, 979
PdmI	GAANNNNTTC	2 cut(s)	1071, 1164
PfeI	GAWTC	6 cut(s)	14, 418, 659, 827, 1067, 1254
PfoI	TCCNGGA	1 cut(s)	158
PinAI	ACCGGT	1 cut(s)	152
PkrI	GCNGC	4 cut(s)	123, 206, 715, 1436
PleI	GAGTC	2 cut(s)	344, 1369
PluTI	GGCGCC	1 cut(s)	1337
PpsI	GAGTC	2 cut(s)	344, 1369
PscI	ACATGT	1 cut(s)	725
PshAI	GACNNNNGTC	1 cut(s)	930
PshBI	ATTAAT	1 cut(s)	216
Psp124BI	GAGCTC	1 cut(s)	1504
PspFI	CCCAGC	1 cut(s)	369
PspN4I	GGNNCC	7 cut(s)	157, 232, 258, 337, 506, 1208, 1335
PspPI	GGNCC	2 cut(s)	628, 792
PsuI	RGATCY	3 cut(s)	906, 960, 1190
PvuII	CAGCTG	1 cut(s)	1610
RsaI	GTAC	2 cut(s)	943, 1203
RsaNI	GTAC	2 cut(s)	942, 1202
RseI	CAYNNNNRTG	1 cut(s)	1529
SacI	GAGCTC	1 cut(s)	1504
SatI	GCNGC	4 cut(s)	122, 205, 714, 1435
Sau3AI	GATC	7 cut(s)	474, 906, 960, 1190, 1561, 1619, 1623
Sau96I	GGNCC	2 cut(s)	628, 792
SchI	GAGTC	2 cut(s)	344, 1370
ScrFI	CCNGG	1 cut(s)	160
SduI	GDGCHC	2 cut(s)	393, 1504
SfaNI	GCATC	5 cut(s)	171, 418, 590, 793, 1315
SfoI	GGCGCC	1 cut(s)	1335
SinI	GGWCC	1 cut(s)	792
SmiMI	CAYNNNNRTG	1 cut(s)	1529
SmlI	CTYRAG	3 cut(s)	433, 448, 1040
SmoI	CTYRAG	3 cut(s)	433, 448, 1040
SphI	GCATGC	1 cut(s)	1637
SsiI	CCGC	7 cut(s)	62, 121, 124, 140, 711, 877, 1379
SspDI	GGCGCC	1 cut(s)	1333
SspMI	CTAG	3 cut(s)	401, 549, 1194
SstI	GAGCTC	1 cut(s)	1504
StyD4I	CCNGG	1 cut(s)	158
StyI	CCWWGG	3 cut(s)	339, 795, 928
TaaI	ACNGT	6 cut(s)	93, 265, 1082, 1206, 1291, 1471
TaiI	ACGT	1 cut(s)	1453
TaqI	TCGA	2 cut(s)	1455, 1622
TatI	WGTACW	1 cut(s)	941
TauI	GCSGC	1 cut(s)	124
TfiI	GAWTC	6 cut(s)	14, 418, 659, 827, 1067, 1254
TscAI	CASTG	2 cut(s)	1031, 1476
TseFI	GTSAC	1 cut(s)	57
TseI	GCWGC	3 cut(s)	204, 713, 1434
Tsp45I	GTSAC	1 cut(s)	57
TspDTI	ATGAA	9 cut(s)	257, 542, 794, 798, 1166, 1173, 1246, 1412, 1513
TspRI	CASTG	2 cut(s)	1031, 1476
Vha464I	CTTAAG	1 cut(s)	433
VpaK11BI	GGWCC	1 cut(s)	792
VspI	ATTAAT	1 cut(s)	216
XapI	RAATTY	5 cut(s)	77, 533, 1090, 1170, 1419
XceI	RCATGY	2 cut(s)	729, 1637
XcmI	CCANNNNNNNNNTGG	1 cut(s)	497
XmnI	GAANNNNTTC	2 cut(s)	1071, 1164
XspI	CTAG	3 cut(s)	401, 549, 1194
Zsp2I	ATGCAT	1 cut(s)	1639

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.