RLG00000010353

Belongs to the helicase family. Dicer subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0001909
Physical Location & Seq
Reverse (-)
916579 .. 925649
9071 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010353

Sequence Viewer

Length: 4872 bp
ATGCATTTGCCAGAGGAAGAAGGCCAGATTCCCCTGAAACGCAGCTTCACTGAAACCACTGATGATCATGGTGCCGCCGCCGATCAAGGAGTTTCAAAGCGCCTCACTCCCAGAAGGTATCAGACACAAGTGTATGAGGTTGCTAGAAAGAGGAACACAATAGCTGTGATGGAGACAGGTACTGGCAAGACAATGATAGCTGTGATGCTCATTGATGAAATTGGTCAAGCTATCAAGTCATCTGGTGACAACAAATTGATCATATTCTTGGCCCCAACTGTTCATCTTGTTCATCAGCAATTTGAGGTTATTAAAGAACACACTACTTTTAAAGTAGAGGAGTATTACGGAGCCAAGGGGGTTGATGCGTGGGATAAGGAGCATTGGGAAAAGGAATTTAAAACCCATGATGTACTGGTTATGACACCCCAGATTATTTTGGATGCCTTAAGAAAGGCATTCTTGACCATAGAAGCAGTATGCTTGATGATTATGGATGAGTGCCATCGGGCTACCGGAAACCACCCTTATACAAAGATAATGAAGGAGTTTTATCACAGGTCTAGTATCAAGCCAAAAGTTTTTGGAATGACGGCTTCTCCGGTAATTCGAAAGGGTGTCTCATCCACAATGGACTGTGAAGATCAAATATCTGAACTTGAAAGTATTTTGGATTCCCAGATTTATACTATAGAGGATAAAACAGAGATGGAAGTATATGCCCCTACTGCAAAAGAAACTCGTAGATTTTATAACCCAACATGGTTTTTGAGTTTGGATTTGAAAGAAAAGATCAAGGCGTCTTGGTCGAAGAATGATGCTTCGTTTTTAAAGCTGCAAGAATCAGTTCAAAGCAATTTCAAAGATTTGGATGACAAAGTTAAGGCCCTGCGGAAACGATTGTCTAATGACTATGAAAAGATCCTGTATTGCCTGGACGACCTTGGTCTCATATGTGCTTATGAGGCTGTGAAGGTCTGTCTAGAGAATGCTCCTACTAGCGAAGAGTGTGAATTTTATAGAGAAAGTTCTTTGCAGTGCAGATATTTTCTTGAGGAAGTTTTTGGTATAATCAAGCAATCTCTTTCGAATGGTTGTGAAAATTTTTTGGATGTTGGGTTTGACTATTTGAAGGCAGTAGATTTGGGCTACATATCTCCAAAGTTAAATGAACTTGTTCAGCTTTTCCATTCGTTTGGAGTATGTAGGGAACTACTGTGCCTCATCTTTGTGGATAGAATTGTCACTGCTAAAGTGATTGAAAGATTTATGAGAAAAGTTACCTCCTTATCTCATTTCAAAATTTCCTATTTGACTGGGAGTACTACATCAGTTGATGCTCTGACACCAAAAGTACAAAAGGAGACATTGAAGTTATTCAGCTCTGGGCAGGTCAATTTATTATTTTCTACCGATGTAGTTGAGGAGGGAATTCATGTTCCAAACTGCTCCTGTGTGATACGTTTTGACTTGCCAAAGACAGTGCGTAGTTATGTCCAGTCCAGAGGACGGGCTCGTCAAGATAACTCTCAATTCATTGTAATGCTGGAAAGGGGAAACAAGCAACAGAGGGATCAACTATATGAGATCATCAAGAGCGAAGGTTTGATGACAAATACAGCTCTAAATAGAGATCCTGAAGAAAGCGTTTTGAAACCATGTACACTTGATGAAATAAGTGAATATGTTGTGAATGCCACTGGAGCATCAGTTACAGCAGATTCCAGTGTCCGTACTATACATAAGTATTGTGACACGCTTCCCAGAGACAAGTACTTTGTTCCAAGACCAGCATTTCAATTTTCATATCTCGGAGATTCTTATGAATGTAAGATTACATTGCCTCCAAATGCGGCTTTCCAAACCTTGGTCGGTCCTGCATGCAAAAACTCCGCTTTATCAAAGCAGGTTGTATGCTTAGAAGCTTGTAAGAAGCTGCATCAATTGGGTGCCTTGAATGATCATCTTCTCCCGTCCACTGATAAGCATTTGGAGAAAGATATAAATGTAGAAAGCAAAGGGCCAGCTTCTGGTGCAGGAACAACTAAAAGGAAGGAACTACATGGGACAACTGGCATTCGCGCTCTGTCAGGAACTTGGGCAGAAAAACTTGATGGTGCCGTTTTTTACGCTTATAAATTTGACTTCTCCTGTGATATTATTACCGAGCTATATTCTGGATTTATTCTTCTGATTGAGTCAGAGCTTGCTAAGGATGTGGGGAATATTGAATTGACGCTTTACTTGGTTTCAAAGAAAGTTAAAGCTTCTGTTTCTTCCTGTGGCCAAGTTCGTTTGGATGGAGAACAGATGGCAAAAGCAAAGCTCTTTCAGGAATTTTTCTTCAATGGATTGTTTGGGAAATTGTTTCATCGAGCCAACCCAGCTGAAAAGCAGAGAGAGTTTTTACTTATGAAAGAAACAAGAAAGCTGTGGAGGCAATCATACATGTATTTGGTTCTTCCGCTTGAAACATTGGATGTATTTGGTTCTTGGACAATAAATTGGGGAGGGATCAGTTCTTGTGTTTCTGTGGTAGAGTTCTTGAAGCAAAATGCATTGTTGGGTGCTCAGCATTGTAAGGGTGACACAAGGAATTCATTGCAAAGCAGAAGTGGCGCATCTGGGACTGGATGCAATAGTTCACAGATATTCCACTTTGCTGATTCTTCTGTTAATGAAAAAAATCTCAAAGATATGGTGGTAGTGGCCATCCACACCGGAAAAATATATTCTGTTTTTGAGGTTTTGAGTGACACATCCGCTGAGAGTCCTTTTGACACATCACAGTACAATACCTATGCTGAGTACTTCCACAAAAAATATGGGGTTCTGCTCATGTATCCGGGTCAGCCTTTGTTGCGGCTGAAGCAAAATCATAATCCACACAACCTTCTTGTGAACTTCAGTGGCGAAGGTGTTAGTGGTAAGACATCAGAATCTGGCCTTGTTAATGGAAAGGAACGTATGTATGCCCATATGCCTCCTGAGCTTCTAGTCTGTACTGGATTGCGAAGAGATGTTTTGAAGTCATTTTATCTACTACCATCATTGATTCATCGATTGGAATCCTTGATGTTAGCCAGCCAACTCAGAGAAGAGATTGACAGTCATTGCAGCTTACAGATATCAAGCTCATTGATTCTAGAAGCACTTACATCACTCAGATGCAGTGAAGATTTTTCCATGGAGCGTTTGGAATTGCTTGGCGATTCAGTGCTAAAGTATACTGTAGGCTGCCACCTCTTCCTAAAATATCCCGAAAAACATGATGGACAATTATCTTCTCTGCGCCAGTCTGTAATTTGTAACGCTAACCTGCATAAATTGGGAATAGATCGAAACTTACAGGGATATATACGTGATGGTGCTTTTGATCCACGCCGTTGGGTTGGTCCAGGACAGGTCTCTATACGACCTGTTCCTTGTGAGTGTGGAGTGGATACCTTAGAAGTTCCAGTAGATAGCAAGTTTCAAACTAGAGACCGTGAAGTTGTGGTTGGAAAGTGCTGTGACAAAGGCCATAGATGGATGGGTTCCAAAACAATCTCTGATTGCGTTGAAGCCCTTATAGGAGCTTACTATGTAGCTGGTGGATTATCTGCTGCAGTCCATTTTATGAAGTGGCTCCAAATTGATGTAGAACTTGAGCCATCCTTGGTTTCTGAAGCAATTACTACTGCATCACTTCATTCCTGCAACCCAAAAGTGGATGAGATTGGAATCCTAGAGTCAAAGCTTCGTTATGTATTTTCTACCAAGGGTCTCTTACAGGAAGCTATAACACATGCATCTGAGCAAGAATCAAAACTTGGCTATTCTTATGAGAGACTAGAGTTTCTCGGTGATTGTGTGTTGGACCTGCTTATCACATGGTATCTCTATCAGAGCCACAAAGATATTGATCCAGGCGAGTTAACTGACTTGCGTGCTGCTTCCGTTAACAATGAAAACTTTGCTCAAGCTGCTGTGAGACACAACCTTCAACAGCATCTACAACATTGCTCTGGGTTACTTCAAAGTCAAATAACAGAATATGTAAAGTTGCTTTCTGAACATGATAGTGGTGACAAACTTCAAGGGCCAAAAGGTCCTAAGGCTCTTGGAGACATGGTGGAAAGTATTGCAGGGGCAATACTAATTGATACGGAGCTCAACCTTGACGAAGTGTGGAGAGTATACAAACCACTGTTATCTCCAATTGTGACCCCTGATAAACTTGAGCTGCCTCCCTTGCGTGAACTGATTGAATTATGTGGCTCACTTGGGTACTTTTATAAAGAACAAACTGTAAAGAAGGGTGAAACAGTTCACGCGGAGCTTAGTGTACAGCTGAAAGATGTCCTGTTGATTGGAGAGGGGATTGATCGGAGTAAGAAAATCGCAAAAGGAGAAGCAGCTCATCATTTATTGAAGGAGCTTGAGAAAAGAGGTATTACACACTCTGGGTCTGCCAGGAAGAGAAAACTGGGTGCTGACCAAGTTGATGATTCATCTCCAATAAAGCAAAAGAAAACTGAGATGCATCTGCCTATGGATGCAACTGGACTTTCTTTGCCAGCCACTGACAGAAAAATAAGTGGTTCAAAAAATGGCATCCCAGTTATCAAAGCAATCAACATGAAGAAAGGAGGACCTCGAGTCTCTCTTTACGAGCTGTGCAAACAACTACAATGGCAAATGCCTACCTTCAAACCAACAGAAAAGGATTCCAGTTTCATATCAACAATAACGTTGTACATACCCAATTTGGGCAACATCGAATGCACAGGAGATCCTAGGTCAGATAAGAAGAGTTCACTAGACTCTGCAGCACTTCTCATGCTTTATGATCTCGAAAGGCAGGGTAAAATTATCATTGGTGGATGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0002252 GO:0002376 GO:0003674 GO:0003676 GO:0003723 GO:0003725 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004525 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006259 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009615 GO:0009616 GO:0009892 GO:0009987 GO:0010033 GO:0010216 GO:0010267 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016246 GO:0016441 GO:0016442 GO:0016458 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0031332 GO:0031974 GO:0031981 GO:0032296 GO:0032991 GO:0034641 GO:0035194 GO:0035821 GO:0040029 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043331 GO:0044003 GO:0044237 GO:0044238 GO:0044260 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045087 GO:0046483 GO:0048519 GO:0050789 GO:0050896 GO:0051214 GO:0051607 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0052018 GO:0052249 GO:0060255 GO:0065007 GO:0070013 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0098542 GO:0098586 GO:0140098 GO:1901360 GO:1901363 GO:1901698 GO:1901699 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko05206 map05206
Pfam Domains
Protein Families
DEAD Dicer_dimer Helicase_C PAZ ResIII Ribonuclease_3 dsrm

Protein Analysis

1624

Amino Acids

182.11

Weight (kDa)

6.47

Isoelectric Point (pI)

40.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ResIII PF04851 35 - 201 8.7e-18 Type III restriction enzyme, res subunit
DEAD PF00270 39 - 201 7.8e-20 DEAD/DEAH box helicase
Helicase_C PF00271 406 - 505 1.1e-16 Helicase conserved C-terminal domain
Dicer_dimer PF03368 576 - 662 1.7e-23 Dicer dimerisation domain
PAZ PF02170 890 - 1017 2.2e-11 PAZ domain
Ribonucleas_3_3 PF14622 1062 - 1121 4.7e-07 Ribonuclease-III-like
Ribonuclease_3 PF00636 1064 - 1199 3.1e-17 Ribonuclease III domain
Ribonucleas_3_3 PF14622 1255 - 1382 2.3e-14 Ribonuclease-III-like
Ribonuclease_3 PF00636 1276 - 1383 1.3e-19 Ribonuclease III domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 753, 2136, 4278
AasI GACNNNNNNGTC 1 cut(s) 1515
Acc36I ACCTGC 4 cut(s) 1381, 1897, 3327, 3870
AccB1I GGYRCC 3 cut(s) 71, 1949, 2117
AccB7I CCANNNNNTGG 2 cut(s) 1867, 2030
AccI GTMKAC 2 cut(s) 3227, 4179
AccII CGCG 2 cut(s) 2082, 4316
AciI CCGC 9 cut(s) 75, 78, 892, 1853, 1893, 2465, 2763, 2863, 4316
AclI AACGTT 1 cut(s) 4733
AclWI GGATC 7 cut(s) 916, 1581, 1628, 2522, 3371, 3899, 4769
AcoI YGGCCR 2 cut(s) 2284, 2709
AcsI RAATTY 8 cut(s) 395, 1013, 1102, 1302, 1431, 2138, 2336, 2596
AcuI CTGAAG 4 cut(s) 1659, 2888, 2890, 3687
AcyI GRCGYC 1 cut(s) 800
AfiI CCNNNNNNNGG 5 cut(s) 1509, 1867, 2030, 3709, 4751
AflII CTTAAG 1 cut(s) 448
AflIII ACRYGT 1 cut(s) 2448
AhdI GACNNNNNGTC 1 cut(s) 4640
AjnI CCWGG 4 cut(s) 933, 3397, 3907, 4454
AjuI GAANNNNNNNTTGG 4 cut(s) 3483, 3515, 3795, 3827
AloI GAACNNNNNNTCC 2 cut(s) 1422, 1454
Alw21I GWGCWC 2 cut(s) 2572, 4155
AlwI GGATC 7 cut(s) 916, 1581, 1628, 2522, 3371, 3899, 4769
AlwNI CAGNNNCTG 4 cut(s) 182, 2030, 2942, 4565
Ama87I CYCGRG 1 cut(s) 4638
AoxI GGCC 9 cut(s) 22, 270, 885, 2021, 2284, 2709, 2944, 3520, 4082
ApoI RAATTY 8 cut(s) 395, 1013, 1102, 1302, 1431, 2138, 2336, 2596
ArsI GACNNNNNNTTYG 2 cut(s) 1760, 1792
Asp700I GAANNNNTTC 4 cut(s) 846, 1176, 1376, 4308
AspA2I CCTAGG 1 cut(s) 4778
AspLEI GCGC 4 cut(s) 102, 2084, 2621, 3294
AspS9I GGNCC 9 cut(s) 271, 886, 1874, 2021, 3395, 3859, 4082, 4091, 4634
AsuC2I CCSGG 1 cut(s) 2847
AsuHPI GGTGA 5 cut(s) 257, 2597, 3857, 4079, 4313
AsuII TTCGAA 2 cut(s) 610, 1088
AvaI CYCGRG 1 cut(s) 4638
AvaII GGWCC 5 cut(s) 1874, 3395, 3859, 4091, 4634
AvrII CCTAGG 1 cut(s) 4778
AxyI CCTNAGG 1 cut(s) 4095
BalI TGGCCA 2 cut(s) 2286, 2711
BanI GGYRCC 3 cut(s) 71, 1949, 2117
BanII GRGCYC 2 cut(s) 1516, 4155
Bbv12I GWGCWC 2 cut(s) 2572, 4155
BceAI ACGGC 3 cut(s) 609, 2105, 3369
BciT130I CCWGG 4 cut(s) 935, 3399, 3909, 4456
BciVI GTATCC 2 cut(s) 2853, 3436
BclI TGATCA 3 cut(s) 64, 258, 1960
BcnI CCSGG 1 cut(s) 2847
BfmI CTRYAG 4 cut(s) 690, 3231, 3606, 4809
BfoI RGCGCY 1 cut(s) 103
BfrI CTTAAG 1 cut(s) 448
BfuAI ACCTGC 4 cut(s) 1381, 1897, 3327, 3870
BfuI GTATCC 2 cut(s) 2853, 3436
BlnI CCTAGG 1 cut(s) 4778
BlpI GCTNAGC 1 cut(s) 2571
BmcAI AGTACT 3 cut(s) 1324, 1775, 2810
Bme1390I CCNGG 5 cut(s) 935, 2847, 3399, 3909, 4456
Bme18I GGWCC 5 cut(s) 1874, 3395, 3859, 4091, 4634
BmeRI GACNNNNNGTC 1 cut(s) 4640
BmeT110I CYCGRG 1 cut(s) 4638
BmgT120I GGNCC 9 cut(s) 271, 886, 1874, 2021, 3395, 3859, 4082, 4091, 4634
BmiI GGNNCC 7 cut(s) 73, 273, 352, 1951, 2119, 3538, 3629
BmrFI CCNGG 5 cut(s) 935, 2847, 3399, 3909, 4456
BmrI ACTGGG 3 cut(s) 1326, 4478, 4595
BmuI ACTGGG 3 cut(s) 1326, 4478, 4595
BoxI GACNNNNGTC 1 cut(s) 945
BpmI CTGGAG 1 cut(s) 1722
Bpu10I CCTNAGC 2 cut(s) 2211, 2988
Bpu1102I GCTNAGC 1 cut(s) 2571
Bpu14I TTCGAA 2 cut(s) 610, 1088
BpuEI CTTGAG 5 cut(s) 1073, 3668, 3945, 4241, 4442
BpuMI CCSGG 1 cut(s) 2847
Bsa29I ATCGAT 1 cut(s) 3061
BsaAI YACGTR 1 cut(s) 3362
BsaBI GATNNNNATC 3 cut(s) 3067, 3722, 3903
BsaHI GRCGYC 1 cut(s) 800
BsaI GGTCTC 4 cut(s) 953, 3412, 3477, 3770
BsaJI CCNNGG 7 cut(s) 354, 943, 1866, 3186, 3657, 3759, 4778
BsaWI WCCGGW 3 cut(s) 515, 601, 2720
BsaXI ACNNNNNCTCC 8 cut(s) 583, 613, 1695, 1725, 1828, 1858, 4098, 4128
Bsc4I CCNNNNNNNGG 5 cut(s) 1509, 1867, 2030, 3709, 4751
Bse21I CCTNAGG 1 cut(s) 4095
Bse3DI GCAATG 4 cut(s) 1838, 2600, 3112, 4000
Bse8I GATNNNNATC 3 cut(s) 3067, 3722, 3903
BseBI CCWGG 4 cut(s) 935, 3399, 3909, 4456
BseCI ATCGAT 1 cut(s) 3061
BseDI CCNNGG 7 cut(s) 354, 943, 1866, 3186, 3657, 3759, 4778
BseJI GATNNNNATC 3 cut(s) 3067, 3722, 3903
BseLI CCNNNNNNNGG 5 cut(s) 1509, 1867, 2030, 3709, 4751
BseMI GCAATG 4 cut(s) 1838, 2600, 3112, 4000
BseMII CTCAG 8 cut(s) 2585, 2757, 2796, 2979, 3106, 3178, 3786, 4509
BseRI GAGGAG 2 cut(s) 353, 1439
BseYI CCCAGC 1 cut(s) 2383
BsgI GTGCAG 2 cut(s) 1060, 2055
Bsh1236I CGCG 2 cut(s) 2082, 4316
BshFI GGCC 9 cut(s) 24, 272, 887, 2023, 2286, 2711, 2946, 3522, 4084
BshNI GGYRCC 3 cut(s) 71, 1949, 2117
BshVI ATCGAT 1 cut(s) 3061
BsiHKAI GWGCWC 2 cut(s) 2572, 4155
BsiHKCI CYCGRG 1 cut(s) 4638
BsiSI CCGG 4 cut(s) 516, 602, 2721, 2846
BslFI GGGAC 2 cut(s) 2080, 2641
BslI CCNNNNNNNGG 5 cut(s) 1509, 1867, 2030, 3709, 4751
BsmFI GGGAC 2 cut(s) 2080, 2641
BsmI GAATGC 5 cut(s) 458, 994, 1699, 2076, 4769
BsnI GGCC 9 cut(s) 24, 272, 887, 2023, 2286, 2711, 2946, 3522, 4084
Bso31I GGTCTC 4 cut(s) 953, 3412, 3477, 3770
BsoBI CYCGRG 1 cut(s) 4638
Bsp119I TTCGAA 2 cut(s) 610, 1088
Bsp1286I GDGCHC 3 cut(s) 1516, 2572, 4155
Bsp1407I TGTACA 3 cut(s) 1661, 4327, 4737
Bsp1720I GCTNAGC 1 cut(s) 2571
Bsp19I CCATGG 1 cut(s) 3186
BspACI CCGC 9 cut(s) 75, 78, 892, 1853, 1893, 2465, 2763, 2863, 4316
BspANI GGCC 9 cut(s) 24, 272, 887, 2023, 2286, 2711, 2946, 3522, 4084
BspCNI CTCAG 8 cut(s) 2584, 2758, 2797, 2980, 3105, 3177, 3787, 4510
BspDI ATCGAT 1 cut(s) 3061
BspFNI CGCG 2 cut(s) 2082, 4316
BspLI GGNNCC 7 cut(s) 73, 273, 352, 1951, 2119, 3538, 3629
BspMAI CTGCAG 2 cut(s) 3610, 4813
BspMI ACCTGC 4 cut(s) 1381, 1897, 3327, 3870
BspPI GGATC 7 cut(s) 916, 1581, 1628, 2522, 3371, 3899, 4769
BspT104I TTCGAA 2 cut(s) 610, 1088
BspT107I GGYRCC 3 cut(s) 71, 1949, 2117
BspTI CTTAAG 1 cut(s) 448
BspTNI GGTCTC 4 cut(s) 953, 3412, 3477, 3770
BsrDI GCAATG 4 cut(s) 1838, 2600, 3112, 4000
BsrGI TGTACA 3 cut(s) 1661, 4327, 4737
BssECI CCNNGG 7 cut(s) 354, 943, 1866, 3186, 3657, 3759, 4778
BssNAI GTATAC 2 cut(s) 3228, 4180
BssNI GRCGYC 1 cut(s) 800
BssT1I CCWWGG 7 cut(s) 354, 943, 1866, 3186, 3657, 3759, 4778
Bst1107I GTATAC 2 cut(s) 3228, 4180
Bst2UI CCWGG 4 cut(s) 935, 3399, 3909, 4456
Bst6I CTCTTC 6 cut(s) 999, 3010, 3093, 3251, 4454, 4787
BstACI GRCGYC 1 cut(s) 800
BstAFI CTTAAG 1 cut(s) 448
BstAUI TGTACA 3 cut(s) 1661, 4327, 4737
BstBAI YACGTR 1 cut(s) 3362
BstBI TTCGAA 2 cut(s) 610, 1088
BstC8I GCNNGC 6 cut(s) 1882, 2025, 2208, 3085, 3930, 4560
BstDSI CCRYGG 1 cut(s) 3186
BstFNI CGCG 2 cut(s) 2082, 4316
BstH2I RGCGCY 1 cut(s) 103
BstHHI GCGC 4 cut(s) 102, 2084, 2621, 3294
BstNI CCWGG 4 cut(s) 935, 3399, 3909, 4456
BstNSI RCATGY 3 cut(s) 1884, 2452, 3791
BstPAI GACNNNNGTC 1 cut(s) 945
BstSCI CCNGG 5 cut(s) 933, 2845, 3397, 3907, 4454
BstSFI CTRYAG 4 cut(s) 690, 3231, 3606, 4809
BstUI CGCG 2 cut(s) 2082, 4316
BstX2I RGATCY 3 cut(s) 921, 1633, 4774
BstXI CCANNNNNNTGG 2 cut(s) 1196, 3387
BstYI RGATCY 3 cut(s) 921, 1633, 4774
BstZ17I GTATAC 2 cut(s) 3228, 4180
Bsu15I ATCGAT 1 cut(s) 3061
Bsu36I CCTNAGG 1 cut(s) 4095
BsuI GTATCC 2 cut(s) 2853, 3436
BsuRI GGCC 9 cut(s) 24, 272, 887, 2023, 2286, 2711, 2946, 3522, 4084
BsuTUI ATCGAT 1 cut(s) 3061
BtgI CCRYGG 1 cut(s) 3186
BtsI GCAGTG 3 cut(s) 1043, 1245, 3178
BveI ACCTGC 4 cut(s) 1381, 1897, 3327, 3870
Cac8I GCNNGC 6 cut(s) 1882, 2025, 2208, 3085, 3930, 4560
CaiI CAGNNNCTG 4 cut(s) 182, 2030, 2942, 4565
CfoI GCGC 4 cut(s) 102, 2084, 2621, 3294
Cfr13I GGNCC 9 cut(s) 271, 886, 1874, 2021, 3395, 3859, 4082, 4091, 4634
ClaI ATCGAT 1 cut(s) 3061
CseI GACGC 2 cut(s) 789, 2245
DraI TTTAAA 3 cut(s) 331, 400, 831
DrdI GACNNNNNNGTC 1 cut(s) 1515
DriI GACNNNNNGTC 1 cut(s) 4640
DseDI GACNNNNNNGTC 1 cut(s) 1515
EaeI YGGCCR 2 cut(s) 2284, 2709
Eam1104I CTCTTC 6 cut(s) 999, 3010, 3093, 3251, 4454, 4787
Eam1105I GACNNNNNGTC 1 cut(s) 4640
EarI CTCTTC 6 cut(s) 999, 3010, 3093, 3251, 4454, 4787
Ecl136II GAGCTC 1 cut(s) 4153
Eco130I CCWWGG 7 cut(s) 354, 943, 1866, 3186, 3657, 3759, 4778
Eco24I GRGCYC 2 cut(s) 1516, 4155
Eco31I GGTCTC 4 cut(s) 953, 3412, 3477, 3770
Eco32I GATATC 1 cut(s) 3129
Eco47I GGWCC 5 cut(s) 1874, 3395, 3859, 4091, 4634
Eco53kI GAGCTC 1 cut(s) 4153
Eco57I CTGAAG 4 cut(s) 1659, 2888, 2890, 3687
Eco81I CCTNAGG 1 cut(s) 4095
Eco88I CYCGRG 1 cut(s) 4638
EcoICRI GAGCTC 1 cut(s) 4153
EcoO109I RGGNCCY 3 cut(s) 886, 4091, 4634
EcoRI GAATTC 2 cut(s) 1431, 2596
EcoRII CCWGG 4 cut(s) 933, 3397, 3907, 4454
EcoRV GATATC 1 cut(s) 3129
EcoT14I CCWWGG 7 cut(s) 354, 943, 1866, 3186, 3657, 3759, 4778
EcoT22I ATGCAT 4 cut(s) 6, 2560, 3793, 4527
EcoT38I GRGCYC 2 cut(s) 1516, 4155
ErhI CCWWGG 7 cut(s) 354, 943, 1866, 3186, 3657, 3759, 4778
FalI AAGNNNNNCTT 4 cut(s) 446, 478, 3752, 3784
FaqI GGGAC 2 cut(s) 2080, 2641
FauNDI CATATG 2 cut(s) 953, 2979
FbaI TGATCA 3 cut(s) 64, 258, 1960
FblI GTMKAC 2 cut(s) 3227, 4179
FriOI GRGCYC 2 cut(s) 1516, 4155
GlaI GCGC 4 cut(s) 101, 2083, 2620, 3293
GsaI CCCAGC 1 cut(s) 2387
GsuI CTGGAG 1 cut(s) 1722
HaeII RGCGCY 1 cut(s) 103
HaeIII GGCC 9 cut(s) 24, 272, 887, 2023, 2286, 2711, 2946, 3522, 4084
HapII CCGG 4 cut(s) 516, 602, 2721, 2846
HgaI GACGC 2 cut(s) 789, 2245
HhaI GCGC 4 cut(s) 102, 2084, 2621, 3294
Hin1I GRCGYC 1 cut(s) 800
Hin6I GCGC 4 cut(s) 100, 2082, 2619, 3292
HinP1I GCGC 4 cut(s) 100, 2082, 2619, 3292
HincII GTYRAC 2 cut(s) 3918, 3943
HindII GTYRAC 2 cut(s) 3918, 3943
HindIII AAGCTT 3 cut(s) 1923, 2265, 3737
HpaI GTTAAC 2 cut(s) 3918, 3943
HpaII CCGG 4 cut(s) 516, 602, 2721, 2846
HphI GGTGA 5 cut(s) 257, 2597, 3857, 4079, 4313
HpyCH4IV ACGT 4 cut(s) 1462, 2965, 3361, 4733
HpySE526I ACGT 4 cut(s) 1462, 2965, 3361, 4733
Hsp92I GRCGYC 1 cut(s) 800
HspAI GCGC 4 cut(s) 100, 2082, 2619, 3292
Ksp22I TGATCA 3 cut(s) 64, 258, 1960
KspAI GTTAAC 2 cut(s) 3918, 3943
MaeII ACGT 4 cut(s) 1462, 2965, 3361, 4733
MfeI CAATTG 2 cut(s) 1943, 4200
MflI RGATCY 3 cut(s) 921, 1633, 4774
MhlI GDGCHC 3 cut(s) 1516, 2572, 4155
MlsI TGGCCA 2 cut(s) 2286, 2711
MluNI TGGCCA 2 cut(s) 2286, 2711
MlyI GAGTC 5 cut(s) 2207, 2779, 3740, 4650, 4799
MmeI TCCRAC 2 cut(s) 3481, 3837
Mox20I TGGCCA 2 cut(s) 2286, 2711
Mph1103I ATGCAT 4 cut(s) 6, 2560, 3793, 4527
MroXI GAANNNNTTC 4 cut(s) 846, 1176, 1376, 4308
MscI TGGCCA 2 cut(s) 2286, 2711
MslI CAYNNNNRTG 4 cut(s) 1229, 1541, 3166, 4062
Msp20I TGGCCA 2 cut(s) 2286, 2711
MspA1I CMGCKG 3 cut(s) 2387, 2765, 4333
MspCI CTTAAG 1 cut(s) 448
MspI CCGG 4 cut(s) 516, 602, 2721, 2846
MspR9I CCNGG 5 cut(s) 935, 2847, 3399, 3909, 4456
MunI CAATTG 2 cut(s) 1943, 4200
Mva1269I GAATGC 5 cut(s) 458, 994, 1699, 2076, 4769
MvaI CCWGG 4 cut(s) 935, 3399, 3909, 4456
MvnI CGCG 2 cut(s) 2082, 4316
NciI CCSGG 1 cut(s) 2847
NcoI CCATGG 1 cut(s) 3186
NdeI CATATG 2 cut(s) 953, 2979
NlaIV GGNNCC 7 cut(s) 73, 273, 352, 1951, 2119, 3538, 3629
NmuCI GTSAC 8 cut(s) 245, 1243, 1751, 2585, 2753, 3512, 4067, 4204
NsiI ATGCAT 4 cut(s) 6, 2560, 3793, 4527
NspI RCATGY 3 cut(s) 1884, 2452, 3791
NspV TTCGAA 2 cut(s) 610, 1088
PaeI GCATGC 1 cut(s) 1884
PaeR7I CTCGAG 1 cut(s) 4638
PciI ACATGT 1 cut(s) 2448
PctI GAATGC 5 cut(s) 458, 994, 1699, 2076, 4769
PdmI GAANNNNTTC 4 cut(s) 846, 1176, 1376, 4308
PflMI CCANNNNNTGG 2 cut(s) 1867, 2030
PfoI TCCNGGA 1 cut(s) 3397
PleI GAGTC 5 cut(s) 2206, 2778, 3739, 4649, 4799
PpsI GAGTC 5 cut(s) 2206, 2778, 3739, 4649, 4799
Ppu21I YACGTR 1 cut(s) 3362
PpuMI RGGWCCY 2 cut(s) 4091, 4634
PscI ACATGT 1 cut(s) 2448
PshAI GACNNNNGTC 1 cut(s) 945
PsiI TTATAA 3 cut(s) 753, 2136, 4278
Psp124BI GAGCTC 1 cut(s) 4155
Psp1406I AACGTT 1 cut(s) 4733
Psp5II RGGWCCY 2 cut(s) 4091, 4634
Psp6I CCWGG 4 cut(s) 933, 3397, 3907, 4454
PspFI CCCAGC 1 cut(s) 2383
PspGI CCWGG 4 cut(s) 933, 3397, 3907, 4454
PspN4I GGNNCC 7 cut(s) 73, 273, 352, 1951, 2119, 3538, 3629
PspPI GGNCC 9 cut(s) 271, 886, 1874, 2021, 3395, 3859, 4082, 4091, 4634
PspPPI RGGWCCY 2 cut(s) 4091, 4634
PspXI VCTCGAGB 1 cut(s) 4638
PstI CTGCAG 2 cut(s) 3610, 4813
PstNI CAGNNNCTG 4 cut(s) 182, 2030, 2942, 4565
PsuI RGATCY 3 cut(s) 921, 1633, 4774
PvuII CAGCTG 2 cut(s) 2387, 4333
RseI CAYNNNNRTG 4 cut(s) 1229, 1541, 3166, 4062
SacI GAGCTC 1 cut(s) 4155
Sau96I GGNCC 9 cut(s) 271, 886, 1874, 2021, 3395, 3859, 4082, 4091, 4634
ScaI AGTACT 3 cut(s) 1324, 1775, 2810
SchI GAGTC 5 cut(s) 2207, 2779, 3740, 4650, 4799
ScrFI CCNGG 5 cut(s) 935, 2847, 3399, 3909, 4456
SduI GDGCHC 3 cut(s) 1516, 2572, 4155
SfcI CTRYAG 4 cut(s) 690, 3231, 3606, 4809
Sfr274I CTCGAG 1 cut(s) 4638
SfuI TTCGAA 2 cut(s) 610, 1088
SinI GGWCC 5 cut(s) 1874, 3395, 3859, 4091, 4634
SlaI CTCGAG 1 cut(s) 4638
SmiMI CAYNNNNRTG 4 cut(s) 1229, 1541, 3166, 4062
SmlI CTYRAG 7 cut(s) 448, 1052, 3647, 3960, 4220, 4421, 4638
SmoI CTYRAG 7 cut(s) 448, 1052, 3647, 3960, 4220, 4421, 4638
SphI GCATGC 1 cut(s) 1884
SsiI CCGC 9 cut(s) 75, 78, 892, 1853, 1893, 2465, 2763, 2863, 4316
SspI AATATT 1 cut(s) 2227
SstI GAGCTC 1 cut(s) 4155
StyD4I CCNGG 5 cut(s) 933, 2845, 3397, 3907, 4454
StyI CCWWGG 7 cut(s) 354, 943, 1866, 3186, 3657, 3759, 4778
TaiI ACGT 4 cut(s) 1465, 2968, 3364, 4736
TaqI TCGA 9 cut(s) 610, 809, 1088, 2374, 3061, 3340, 4639, 4761, 4836
TaqII GACCGA 1 cut(s) 1862
TauI GCSGC 4 cut(s) 77, 80, 1856, 2866
TseFI GTSAC 8 cut(s) 245, 1243, 1751, 2585, 2753, 3512, 4067, 4204
Tsp45I GTSAC 8 cut(s) 245, 1243, 1751, 2585, 2753, 3512, 4067, 4204
TspGWI ACGGA 4 cut(s) 363, 1721, 3928, 4163
Van91I CCANNNNNTGG 2 cut(s) 1867, 2030
Vha464I CTTAAG 1 cut(s) 448
VpaK11BI GGWCC 5 cut(s) 1874, 3395, 3859, 4091, 4634
XapI RAATTY 8 cut(s) 395, 1013, 1102, 1302, 1431, 2138, 2336, 2596
XbaI TCTAGA 2 cut(s) 982, 3145
XceI RCATGY 3 cut(s) 1884, 2452, 3791
XcmI CCANNNNNNNNNTGG 2 cut(s) 2822, 3193
XhoI CTCGAG 1 cut(s) 4638
XmaJI CCTAGG 1 cut(s) 4778
XmiI GTMKAC 2 cut(s) 3227, 4179
XmnI GAANNNNTTC 4 cut(s) 846, 1176, 1376, 4308
ZrmI AGTACT 3 cut(s) 1324, 1775, 2810
Zsp2I ATGCAT 4 cut(s) 6, 2560, 3793, 4527
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.