Belongs to the helicase family. Dicer subfamily
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G43920 AT3G43920 AT3G43920 AT3G43920 AT3G43920 AT3G43920 |
| fragaria_vesca | FvH4_2g07790 FvH4_2g18930 FvH4_2g18930 FvH4_2g30780 FvH4_2g30780 FvH4_2g30780 FvH4_2g30780 |
| malus_domestica | MD08G1046300.v1.1 MD10G1163700.v1.1 MD15G1047500.v1.1 |
| prunus_persica | Prupe.1G401900_v2.0.a1 Prupe.1G401900_v2.0.a1 Prupe.8G202000_v2.0.a1 Prupe.8G202000_v2.0.a1 |
| pyrus_communis | pycom08g03830 pycom08g03840 pycom15g04670 |
| rosa_chinensis | RchiOBHm_Chr6g0284721 RchiOBHm_Chr6g0312121 |
| rosa_laevigata | RLG00000010353 RLG00000012724 |
| rosa_multiflora | Rmu_sc0004065.1_g000007 Rmu_sc0007474.1_g000021 |
| rosa_roxburghii | Rroxscaffold_7G00157050 Rroxscaffold_7G00184440 |
| rosa_rugosa | Rorug06G0165900 Rorug06G0392600 Rorug06G0392700 Rorug06G0392800 |
| rosa_samantha | Rh4CG118000 Rh6AG279000 Rh6AG509700 Rh6BG279000 Rh6BG520600 Rh6CG281300 Rh6CG526600 Rh6DG274000 Rh6DG512000 |
| rosa_wichuraiana | Rw6G023980 Rw6G044350 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 1114, 1991 |
| AccB1I | GGYRCC | 1 cut(s) | 1198 |
| AccI | GTMKAC | 1 cut(s) | 861 |
| AciI | CCGC | 8 cut(s) | 48, 83, 599, 632, 1221, 1340, 2106, 2140 |
| AclI | AACGTT | 1 cut(s) | 99 |
| AclWI | GGATC | 3 cut(s) | 810, 1474, 1508 |
| AcoI | YGGCCR | 1 cut(s) | 1243 |
| AcsI | RAATTY | 4 cut(s) | 689, 1083, 1103, 1555 |
| AcuI | CTGAAG | 3 cut(s) | 998, 1188, 1692 |
| AfaI | GTAC | 5 cut(s) | 480, 790, 809, 922, 1667 |
| AfeI | AGCGCT | 1 cut(s) | 1098 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 173, 584, 585, 1195, 1318, 2181 |
| AflII | CTTAAG | 1 cut(s) | 2176 |
| AjnI | CCWGG | 3 cut(s) | 488, 507, 1449 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 360, 392 |
| Alw21I | GWGCWC | 1 cut(s) | 1719 |
| Alw26I | GTCTC | 7 cut(s) | 243, 275, 380, 1029, 1237, 1278, 1639 |
| AlwI | GGATC | 3 cut(s) | 810, 1474, 1508 |
| Ama87I | CYCGRG | 3 cut(s) | 35, 294, 1780 |
| Aor51HI | AGCGCT | 1 cut(s) | 1098 |
| AoxI | GGCC | 4 cut(s) | 491, 1243, 1328, 2254 |
| ApeKI | GCWGC | 4 cut(s) | 19, 197, 946, 1570 |
| ApoI | RAATTY | 4 cut(s) | 689, 1083, 1103, 1555 |
| AspLEI | GCGC | 1 cut(s) | 1099 |
| AspS9I | GGNCC | 4 cut(s) | 31, 567, 1737, 2172 |
| AsuC2I | CCSGG | 4 cut(s) | 866, 1684, 1781, 1782 |
| AsuHPI | GGTGA | 4 cut(s) | 299, 1301, 1584, 1808 |
| AsuII | TTCGAA | 2 cut(s) | 1483, 2231 |
| AvaI | CYCGRG | 3 cut(s) | 35, 294, 1780 |
| AvaII | GGWCC | 4 cut(s) | 31, 567, 1737, 2172 |
| BalI | TGGCCA | 1 cut(s) | 1245 |
| BanI | GGYRCC | 1 cut(s) | 1198 |
| BbsI | GAAGAC | 1 cut(s) | 2046 |
| Bbv12I | GWGCWC | 1 cut(s) | 1719 |
| BbvI | GCAGC | 4 cut(s) | 31, 209, 958, 1557 |
| BccI | CCATC | 5 cut(s) | 831, 1405, 1750, 2146, 2242 |
| BceAI | ACGGC | 1 cut(s) | 687 |
| BciT130I | CCWGG | 3 cut(s) | 490, 509, 1451 |
| BclI | TGATCA | 1 cut(s) | 706 |
| BcnI | CCSGG | 4 cut(s) | 866, 1684, 1781, 1782 |
| BcoDI | GTCTC | 7 cut(s) | 243, 275, 380, 1029, 1237, 1278, 1639 |
| BfaI | CTAG | 8 cut(s) | 261, 792, 1008, 1455, 1497, 1734, 2052, 2293 |
| BfmI | CTRYAG | 3 cut(s) | 43, 195, 741 |
| BfoI | RGCGCY | 1 cut(s) | 1100 |
| BfrI | CTTAAG | 1 cut(s) | 2176 |
| BfuAI | ACCTGC | 2 cut(s) | 1114, 1991 |
| BglII | AGATCT | 2 cut(s) | 1071, 2062 |
| BisI | GCNGC | 6 cut(s) | 20, 198, 632, 947, 1571, 2106 |
| BlpI | GCTNAGC | 1 cut(s) | 1184 |
| BlsI | GCNGC | 6 cut(s) | 21, 199, 633, 948, 1572, 2107 |
| BmcAI | AGTACT | 1 cut(s) | 809 |
| Bme1390I | CCNGG | 7 cut(s) | 490, 509, 866, 1451, 1684, 1781, 1782 |
| Bme18I | GGWCC | 4 cut(s) | 31, 567, 1737, 2172 |
| BmeT110I | CYCGRG | 3 cut(s) | 35, 294, 1780 |
| BmgT120I | GGNCC | 4 cut(s) | 31, 567, 1737, 2172 |
| BmiI | GGNNCC | 6 cut(s) | 32, 569, 928, 1200, 1739, 2173 |
| BmrFI | CCNGG | 7 cut(s) | 490, 509, 866, 1451, 1684, 1781, 1782 |
| BmrI | ACTGGG | 1 cut(s) | 951 |
| BmsI | GCATC | 5 cut(s) | 280, 869, 977, 1122, 1912 |
| BmuI | ACTGGG | 1 cut(s) | 951 |
| BpiI | GAAGAC | 1 cut(s) | 2046 |
| BpmI | CTGGAG | 2 cut(s) | 257, 296 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1416 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1184 |
| Bpu14I | TTCGAA | 2 cut(s) | 1483, 2231 |
| BpuEI | CTTGAG | 2 cut(s) | 341, 805 |
| BpuMI | CCSGG | 4 cut(s) | 866, 1684, 1781, 1782 |
| Bsa29I | ATCGAT | 1 cut(s) | 907 |
| BsaBI | GATNNNNATC | 1 cut(s) | 141 |
| BsaI | GGTCTC | 2 cut(s) | 275, 1278 |
| BsaJI | CCNNGG | 8 cut(s) | 23, 798, 849, 1473, 1682, 1780, 1781, 2257 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 210, 240, 255, 285, 1694, 1724 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 173, 584, 585, 1195, 1318, 2181 |
| Bse1I | ACTGG | 3 cut(s) | 928, 946, 1343 |
| Bse3DI | GCAATG | 1 cut(s) | 1246 |
| Bse8I | GATNNNNATC | 1 cut(s) | 141 |
| BseBI | CCWGG | 3 cut(s) | 490, 509, 1451 |
| BseCI | ATCGAT | 1 cut(s) | 907 |
| BseDI | CCNNGG | 8 cut(s) | 23, 798, 849, 1473, 1682, 1780, 1781, 2257 |
| BseGI | GGATG | 2 cut(s) | 607, 1469 |
| BseJI | GATNNNNATC | 1 cut(s) | 141 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 173, 584, 585, 1195, 1318, 2181 |
| BseMI | GCAATG | 1 cut(s) | 1246 |
| BseMII | CTCAG | 3 cut(s) | 6, 1045, 1248 |
| BseNI | ACTGG | 3 cut(s) | 928, 946, 1343 |
| BseRI | GAGGAG | 2 cut(s) | 231, 1490 |
| BseXI | GCAGC | 4 cut(s) | 31, 209, 958, 1557 |
| BseYI | CCCAGC | 1 cut(s) | 1792 |
| BsgI | GTGCAG | 2 cut(s) | 1374, 2079 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1080 |
| BshFI | GGCC | 4 cut(s) | 493, 1245, 1330, 2256 |
| BshNI | GGYRCC | 1 cut(s) | 1198 |
| BshVI | ATCGAT | 1 cut(s) | 907 |
| BsiEI | CGRYCG | 1 cut(s) | 1080 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1719 |
| BsiHKCI | CYCGRG | 3 cut(s) | 35, 294, 1780 |
| BsiSI | CCGG | 4 cut(s) | 866, 1684, 1781, 2143 |
| BslFI | GGGAC | 4 cut(s) | 553, 1181, 1295, 1723 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 173, 584, 585, 1195, 1318, 2181 |
| BsmAI | GTCTC | 7 cut(s) | 243, 275, 380, 1029, 1237, 1278, 1639 |
| BsmBI | CGTCTC | 1 cut(s) | 1237 |
| BsmFI | GGGAC | 4 cut(s) | 553, 1181, 1295, 1723 |
| BsmI | GAATGC | 3 cut(s) | 97, 110, 1491 |
| BsnI | GGCC | 4 cut(s) | 493, 1245, 1330, 2256 |
| Bso31I | GGTCTC | 2 cut(s) | 275, 1278 |
| BsoBI | CYCGRG | 3 cut(s) | 35, 294, 1780 |
| Bsp119I | TTCGAA | 2 cut(s) | 1483, 2231 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1719 |
| Bsp143I | GATC | 9 cut(s) | 202, 706, 802, 1071, 1133, 1227, 1466, 1500, 2062 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1184 |
| Bsp19I | CCATGG | 2 cut(s) | 23, 849 |
| BspACI | CCGC | 8 cut(s) | 48, 83, 599, 632, 1221, 1340, 2106, 2140 |
| BspANI | GGCC | 4 cut(s) | 493, 1245, 1330, 2256 |
| BspCNI | CTCAG | 3 cut(s) | 7, 1044, 1247 |
| BspDI | ATCGAT | 1 cut(s) | 907 |
| BspLI | GGNNCC | 6 cut(s) | 32, 569, 928, 1200, 1739, 2173 |
| BspMAI | CTGCAG | 1 cut(s) | 199 |
| BspMI | ACCTGC | 2 cut(s) | 1114, 1991 |
| BspPI | GGATC | 3 cut(s) | 810, 1474, 1508 |
| BspT104I | TTCGAA | 2 cut(s) | 1483, 2231 |
| BspT107I | GGYRCC | 1 cut(s) | 1198 |
| BspTI | CTTAAG | 1 cut(s) | 2176 |
| BspTNI | GGTCTC | 2 cut(s) | 275, 1278 |
| BsrDI | GCAATG | 1 cut(s) | 1246 |
| BsrI | ACTGG | 3 cut(s) | 928, 946, 1343 |
| BssECI | CCNNGG | 8 cut(s) | 23, 798, 849, 1473, 1682, 1780, 1781, 2257 |
| BssMI | GATC | 9 cut(s) | 202, 706, 802, 1071, 1133, 1227, 1466, 1500, 2062 |
| BssT1I | CCWWGG | 4 cut(s) | 23, 798, 849, 2257 |
| Bst2UI | CCWGG | 3 cut(s) | 490, 509, 1451 |
| Bst4CI | ACNGT | 4 cut(s) | 164, 525, 736, 1256 |
| Bst6I | CTCTTC | 1 cut(s) | 768 |
| BstAFI | CTTAAG | 1 cut(s) | 2176 |
| BstBI | TTCGAA | 2 cut(s) | 1483, 2231 |
| BstC8I | GCNNGC | 4 cut(s) | 1812, 1927, 2133, 2163 |
| BstDEI | CTNAG | 7 cut(s) | 15, 873, 992, 1031, 1184, 1234, 1416 |
| BstDSI | CCRYGG | 2 cut(s) | 23, 849 |
| BstF5I | GGATG | 2 cut(s) | 607, 1469 |
| BstH2I | RGCGCY | 1 cut(s) | 1100 |
| BstHHI | GCGC | 1 cut(s) | 1099 |
| BstKTI | GATC | 9 cut(s) | 205, 709, 805, 1074, 1136, 1230, 1469, 1503, 2065 |
| BstMAI | GTCTC | 7 cut(s) | 243, 275, 380, 1029, 1237, 1278, 1639 |
| BstMBI | GATC | 9 cut(s) | 202, 706, 802, 1071, 1133, 1227, 1466, 1500, 2062 |
| BstMCI | CGRYCG | 1 cut(s) | 1080 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 504 |
| BstNI | CCWGG | 3 cut(s) | 490, 509, 1451 |
| BstNSI | RCATGY | 4 cut(s) | 1810, 1929, 2135, 2165 |
| BstSCI | CCNGG | 7 cut(s) | 488, 507, 864, 1449, 1682, 1779, 1780 |
| BstSFI | CTRYAG | 3 cut(s) | 43, 195, 741 |
| BstV1I | GCAGC | 4 cut(s) | 31, 209, 958, 1557 |
| BstV2I | GAAGAC | 1 cut(s) | 2046 |
| BstX2I | RGATCY | 2 cut(s) | 1071, 2062 |
| BstYI | RGATCY | 2 cut(s) | 1071, 2062 |
| Bsu15I | ATCGAT | 1 cut(s) | 907 |
| BsuRI | GGCC | 4 cut(s) | 493, 1245, 1330, 2256 |
| BsuTUI | ATCGAT | 1 cut(s) | 907 |
| BtgI | CCRYGG | 2 cut(s) | 23, 849 |
| BtgZI | GCGATG | 4 cut(s) | 892, 1099, 1389, 2049 |
| BtsCI | GGATG | 2 cut(s) | 607, 1469 |
| BtsI | GCAGTG | 4 cut(s) | 126, 1223, 1748, 1960 |
| BtsIMutI | CAGTG | 7 cut(s) | 126, 732, 974, 1223, 1668, 1748, 1960 |
| BveI | ACCTGC | 2 cut(s) | 1114, 1991 |
| Cac8I | GCNNGC | 4 cut(s) | 1812, 1927, 2133, 2163 |
| CfoI | GCGC | 1 cut(s) | 1099 |
| Cfr13I | GGNCC | 4 cut(s) | 31, 567, 1737, 2172 |
| Cfr9I | CCCGGG | 1 cut(s) | 1780 |
| ClaI | ATCGAT | 1 cut(s) | 907 |
| CseI | GACGC | 1 cut(s) | 1499 |
| Csp6I | GTAC | 5 cut(s) | 479, 789, 808, 921, 1666 |
| CviQI | GTAC | 5 cut(s) | 479, 789, 808, 921, 1666 |
| DdeI | CTNAG | 7 cut(s) | 15, 873, 992, 1031, 1184, 1234, 1416 |
| DpnI | GATC | 9 cut(s) | 204, 708, 804, 1073, 1135, 1229, 1468, 1502, 2064 |
| DpnII | GATC | 9 cut(s) | 202, 706, 802, 1071, 1133, 1227, 1466, 1500, 2062 |
| EaeI | YGGCCR | 1 cut(s) | 1243 |
| Eam1104I | CTCTTC | 1 cut(s) | 768 |
| EarI | CTCTTC | 1 cut(s) | 768 |
| EciI | GGCGGA | 1 cut(s) | 1329 |
| Eco130I | CCWWGG | 4 cut(s) | 23, 798, 849, 2257 |
| Eco147I | AGGCCT | 1 cut(s) | 1330 |
| Eco31I | GGTCTC | 2 cut(s) | 275, 1278 |
| Eco47I | GGWCC | 4 cut(s) | 31, 567, 1737, 2172 |
| Eco47III | AGCGCT | 1 cut(s) | 1098 |
| Eco57I | CTGAAG | 3 cut(s) | 998, 1188, 1692 |
| Eco88I | CYCGRG | 3 cut(s) | 35, 294, 1780 |
| EcoO109I | RGGNCCY | 3 cut(s) | 31, 1737, 2172 |
| EcoRI | GAATTC | 2 cut(s) | 689, 1103 |
| EcoRII | CCWGG | 3 cut(s) | 488, 507, 1449 |
| EcoT14I | CCWWGG | 4 cut(s) | 23, 798, 849, 2257 |
| EcoT22I | ATGCAT | 2 cut(s) | 1927, 2163 |
| ErhI | CCWWGG | 4 cut(s) | 23, 798, 849, 2257 |
| Esp3I | CGTCTC | 1 cut(s) | 1237 |
| FaqI | GGGAC | 4 cut(s) | 553, 1181, 1295, 1723 |
| FauI | CCCGC | 1 cut(s) | 76 |
| FbaI | TGATCA | 1 cut(s) | 706 |
| FblI | GTMKAC | 1 cut(s) | 861 |
| Fnu4HI | GCNGC | 6 cut(s) | 20, 198, 632, 947, 1571, 2106 |
| FokI | GGATG | 2 cut(s) | 614, 1456 |
| Fsp4HI | GCNGC | 6 cut(s) | 20, 198, 632, 947, 1571, 2106 |
| FspBI | CTAG | 8 cut(s) | 261, 792, 1008, 1455, 1497, 1734, 2052, 2293 |
| GlaI | GCGC | 1 cut(s) | 1098 |
| GluI | GCNGC | 6 cut(s) | 20, 198, 632, 947, 1571, 2106 |
| GsaI | CCCAGC | 1 cut(s) | 1796 |
| GsuI | CTGGAG | 2 cut(s) | 257, 296 |
| HaeII | RGCGCY | 1 cut(s) | 1100 |
| HaeIII | GGCC | 4 cut(s) | 493, 1245, 1330, 2256 |
| HapII | CCGG | 4 cut(s) | 866, 1684, 1781, 2143 |
| HgaI | GACGC | 1 cut(s) | 1499 |
| HhaI | GCGC | 1 cut(s) | 1099 |
| Hin6I | GCGC | 1 cut(s) | 1097 |
| HinP1I | GCGC | 1 cut(s) | 1097 |
| HincII | GTYRAC | 2 cut(s) | 528, 542 |
| HindII | GTYRAC | 2 cut(s) | 528, 542 |
| HindIII | AAGCTT | 3 cut(s) | 640, 679, 823 |
| HpaII | CCGG | 4 cut(s) | 866, 1684, 1781, 2143 |
| HphI | GGTGA | 4 cut(s) | 299, 1301, 1584, 1808 |
| Hpy166II | GTNNAC | 7 cut(s) | 479, 528, 542, 620, 724, 862, 1668 |
| Hpy188I | TCNGA | 9 cut(s) | 16, 158, 186, 394, 1034, 1474, 1900, 2091, 2151 |
| Hpy8I | GTNNAC | 7 cut(s) | 479, 528, 542, 620, 724, 862, 1668 |
| HpyCH4III | ACNGT | 4 cut(s) | 164, 525, 736, 1256 |
| HpyCH4IV | ACGT | 2 cut(s) | 99, 1281 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 504 |
| HpyF3I | CTNAG | 7 cut(s) | 15, 873, 992, 1031, 1184, 1234, 1416 |
| HpySE526I | ACGT | 2 cut(s) | 99, 1281 |
| HspAI | GCGC | 1 cut(s) | 1097 |
| Ksp22I | TGATCA | 1 cut(s) | 706 |
| Kzo9I | GATC | 9 cut(s) | 202, 706, 802, 1071, 1133, 1227, 1466, 1500, 2062 |
| LmnI | GCTCC | 3 cut(s) | 218, 932, 1208 |
| Lsp1109I | GCAGC | 4 cut(s) | 31, 209, 958, 1557 |
| LweI | GCATC | 5 cut(s) | 280, 869, 977, 1122, 1912 |
| MaeI | CTAG | 8 cut(s) | 261, 792, 1008, 1455, 1497, 1734, 2052, 2293 |
| MaeII | ACGT | 2 cut(s) | 99, 1281 |
| MaeIII | GTNAC | 4 cut(s) | 176, 439, 651, 1964 |
| MalI | GATC | 9 cut(s) | 204, 708, 804, 1073, 1135, 1229, 1468, 1502, 2064 |
| MboI | GATC | 9 cut(s) | 202, 706, 802, 1071, 1133, 1227, 1466, 1500, 2062 |
| MboII | GAAGA | 9 cut(s) | 438, 785, 963, 1420, 1699, 1737, 2024, 2051, 2204 |
| MfeI | CAATTG | 1 cut(s) | 1514 |
| MflI | RGATCY | 2 cut(s) | 1071, 2062 |
| MhlI | GDGCHC | 1 cut(s) | 1719 |
| MlsI | TGGCCA | 1 cut(s) | 1245 |
| MluNI | TGGCCA | 1 cut(s) | 1245 |
| MlyI | GAGTC | 6 cut(s) | 469, 1031, 1317, 1946, 2036, 2140 |
| MmeI | TCCRAC | 2 cut(s) | 358, 2243 |
| Mox20I | TGGCCA | 1 cut(s) | 1245 |
| Mph1103I | ATGCAT | 2 cut(s) | 1927, 2163 |
| MscI | TGGCCA | 1 cut(s) | 1245 |
| MseI | TTAA | 5 cut(s) | 74, 1559, 1649, 1959, 2177 |
| MslI | CAYNNNNRTG | 3 cut(s) | 594, 1216, 1866 |
| Msp20I | TGGCCA | 1 cut(s) | 1245 |
| MspA1I | CMGCKG | 2 cut(s) | 48, 200 |
| MspCI | CTTAAG | 1 cut(s) | 2176 |
| MspI | CCGG | 4 cut(s) | 866, 1684, 1781, 2143 |
| MspR9I | CCNGG | 7 cut(s) | 490, 509, 866, 1451, 1684, 1781, 1782 |
| MunI | CAATTG | 1 cut(s) | 1514 |
| Mva1269I | GAATGC | 3 cut(s) | 97, 110, 1491 |
| MvaI | CCWGG | 3 cut(s) | 490, 509, 1451 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 504 |
| NciI | CCSGG | 4 cut(s) | 866, 1684, 1781, 1782 |
| NcoI | CCATGG | 2 cut(s) | 23, 849 |
| NdeII | GATC | 9 cut(s) | 202, 706, 802, 1071, 1133, 1227, 1466, 1500, 2062 |
| NlaIV | GGNNCC | 6 cut(s) | 32, 569, 928, 1200, 1739, 2173 |
| NsiI | ATGCAT | 2 cut(s) | 1927, 2163 |
| NspI | RCATGY | 4 cut(s) | 1810, 1929, 2135, 2165 |
| NspV | TTCGAA | 2 cut(s) | 1483, 2231 |
| PaeI | GCATGC | 3 cut(s) | 1929, 2135, 2165 |
| PaeR7I | CTCGAG | 1 cut(s) | 35 |
| PceI | AGGCCT | 1 cut(s) | 1330 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 120 |
| PctI | GAATGC | 3 cut(s) | 97, 110, 1491 |
| PfeI | GAWTC | 6 cut(s) | 316, 659, 869, 1061, 1155, 1622 |
| PflFI | GACNNNGTC | 2 cut(s) | 162, 267 |
| PkrI | GCNGC | 6 cut(s) | 21, 199, 633, 948, 1572, 2107 |
| PleI | GAGTC | 6 cut(s) | 468, 1031, 1316, 1945, 2036, 2140 |
| PpsI | GAGTC | 6 cut(s) | 468, 1031, 1316, 1945, 2036, 2140 |
| PpuMI | RGGWCCY | 3 cut(s) | 31, 1737, 2172 |
| Psp1406I | AACGTT | 1 cut(s) | 99 |
| Psp5II | RGGWCCY | 3 cut(s) | 31, 1737, 2172 |
| Psp6I | CCWGG | 3 cut(s) | 488, 507, 1449 |
| PspFI | CCCAGC | 1 cut(s) | 1792 |
| PspGI | CCWGG | 3 cut(s) | 488, 507, 1449 |
| PspN4I | GGNNCC | 6 cut(s) | 32, 569, 928, 1200, 1739, 2173 |
| PspPI | GGNCC | 4 cut(s) | 31, 567, 1737, 2172 |
| PspPPI | RGGWCCY | 3 cut(s) | 31, 1737, 2172 |
| PspXI | VCTCGAGB | 1 cut(s) | 35 |
| PstI | CTGCAG | 1 cut(s) | 199 |
| PsuI | RGATCY | 2 cut(s) | 1071, 2062 |
| PsyI | GACNNNGTC | 2 cut(s) | 162, 267 |
| PvuII | CAGCTG | 1 cut(s) | 200 |
| RsaI | GTAC | 5 cut(s) | 480, 790, 809, 922, 1667 |
| RsaNI | GTAC | 5 cut(s) | 479, 789, 808, 921, 1666 |
| RseI | CAYNNNNRTG | 3 cut(s) | 594, 1216, 1866 |
| SaqAI | TTAA | 5 cut(s) | 74, 1559, 1649, 1959, 2177 |
| SatI | GCNGC | 6 cut(s) | 20, 198, 632, 947, 1571, 2106 |
| Sau3AI | GATC | 9 cut(s) | 202, 706, 802, 1071, 1133, 1227, 1466, 1500, 2062 |
| Sau96I | GGNCC | 4 cut(s) | 31, 567, 1737, 2172 |
| ScaI | AGTACT | 1 cut(s) | 809 |
| SchI | GAGTC | 6 cut(s) | 469, 1031, 1317, 1946, 2036, 2140 |
| ScrFI | CCNGG | 7 cut(s) | 490, 509, 866, 1451, 1684, 1781, 1782 |
| SduI | GDGCHC | 1 cut(s) | 1719 |
| SfaNI | GCATC | 5 cut(s) | 280, 869, 977, 1122, 1912 |
| SfcI | CTRYAG | 3 cut(s) | 43, 195, 741 |
| Sfr274I | CTCGAG | 1 cut(s) | 35 |
| SfuI | TTCGAA | 2 cut(s) | 1483, 2231 |
| SinI | GGWCC | 4 cut(s) | 31, 567, 1737, 2172 |
| SlaI | CTCGAG | 1 cut(s) | 35 |
| SmaI | CCCGGG | 1 cut(s) | 1782 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 594, 1216, 1866 |
| SmlI | CTYRAG | 4 cut(s) | 35, 320, 820, 2176 |
| SmoI | CTYRAG | 4 cut(s) | 35, 320, 820, 2176 |
| SphI | GCATGC | 3 cut(s) | 1929, 2135, 2165 |
| SseBI | AGGCCT | 1 cut(s) | 1330 |
| SsiI | CCGC | 8 cut(s) | 48, 83, 599, 632, 1221, 1340, 2106, 2140 |
| SspI | AATATT | 1 cut(s) | 1589 |
| SspMI | CTAG | 8 cut(s) | 261, 792, 1008, 1455, 1497, 1734, 2052, 2293 |
| StuI | AGGCCT | 1 cut(s) | 1330 |
| StyD4I | CCNGG | 7 cut(s) | 488, 507, 864, 1449, 1682, 1779, 1780 |
| StyI | CCWWGG | 4 cut(s) | 23, 798, 849, 2257 |
| TaaI | ACNGT | 4 cut(s) | 164, 525, 736, 1256 |
| TaiI | ACGT | 2 cut(s) | 102, 1284 |
| TaqI | TCGA | 9 cut(s) | 36, 114, 207, 907, 1080, 1101, 1483, 1837, 2231 |
| TaqII | GACCGA | 1 cut(s) | 1066 |
| TatI | WGTACW | 2 cut(s) | 788, 807 |
| TauI | GCSGC | 2 cut(s) | 634, 2108 |
| TfiI | GAWTC | 6 cut(s) | 316, 659, 869, 1061, 1155, 1622 |
| Tru1I | TTAA | 5 cut(s) | 74, 1559, 1649, 1959, 2177 |
| Tru9I | TTAA | 5 cut(s) | 74, 1559, 1649, 1959, 2177 |
| TscAI | CASTG | 7 cut(s) | 133, 739, 981, 1223, 1675, 1755, 1960 |
| TseI | GCWGC | 4 cut(s) | 19, 197, 946, 1570 |
| TspGWI | ACGGA | 3 cut(s) | 1097, 1653, 2201 |
| TspMI | CCCGGG | 1 cut(s) | 1780 |
| TspRI | CASTG | 7 cut(s) | 133, 739, 981, 1223, 1675, 1755, 1960 |
| Tth111I | GACNNNGTC | 2 cut(s) | 162, 267 |
| Vha464I | CTTAAG | 1 cut(s) | 2176 |
| VpaK11BI | GGWCC | 4 cut(s) | 31, 567, 1737, 2172 |
| XapI | RAATTY | 4 cut(s) | 689, 1083, 1103, 1555 |
| XceI | RCATGY | 4 cut(s) | 1810, 1929, 2135, 2165 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 281, 757 |
| XhoI | CTCGAG | 1 cut(s) | 35 |
| XmaI | CCCGGG | 1 cut(s) | 1780 |
| XmiI | GTMKAC | 1 cut(s) | 861 |
| XspI | CTAG | 8 cut(s) | 261, 792, 1008, 1455, 1497, 1734, 2052, 2293 |
| ZrmI | AGTACT | 1 cut(s) | 809 |
| Zsp2I | ATGCAT | 2 cut(s) | 1927, 2163 |