Transcriptional activator
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G04560 AT5G04560 AT5G04560 |
| fragaria_vesca | FvH4_2g10170 FvH4_2g10170 FvH4_2g10170 FvH4_2g10170 FvH4_2g10170 |
| malus_domestica | MD02G1245300.v1.1 MD07G1071800.v1.1 MD09G1259000.v1.1 MD09G1259100.v1.1 MD17G1253500.v1.1 MD17G1253600.v1.1 |
| prunus_persica | Prupe.2G089400_v2.0.a1 Prupe.7G005000_v2.0.a1 Prupe.7G005000_v2.0.a1 Prupe.7G005000_v2.0.a1 Prupe.7G005000_v2.0.a1 Prupe.7G005000_v2.0.a1 Prupe.7G005000_v2.0.a1 |
| pyrus_communis | pycom02g21110 pycom09g17380 pycom17g25620 pycom17g25630 |
| rosa_chinensis | RchiOBHm_Chr6g0267351 RchiOBHm_Chr6g0267361 |
| rosa_laevigata | RLG00000014013 |
| rosa_multiflora | Rmu_sc0000746.1_g000002 Rmu_sc0019664.1_g000001 |
| rosa_roxburghii | Rroxscaffold_7G00200830 |
| rosa_rugosa | Rorug06G0031600 Rorug06G0031700 Rorug06G0031800 Rorug06G0031900 Rorug06G0032000 |
| rosa_samantha | Rh6AG153500 Rh6BG153200 Rh6CG149300 Rh6DG137600 |
| rosa_wichuraiana | Rw6G013200 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 4346 |
| AarI | CACCTGC | 3 cut(s) | 144, 904, 4264 |
| Acc36I | ACCTGC | 5 cut(s) | 144, 293, 904, 3847, 4264 |
| AccB1I | GGYRCC | 2 cut(s) | 3178, 3372 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 5591 |
| AccI | GTMKAC | 5 cut(s) | 932, 1310, 2880, 5293, 5697 |
| AciI | CCGC | 5 cut(s) | 275, 782, 1082, 5256, 5843 |
| AcoI | YGGCCR | 2 cut(s) | 483, 4715 |
| AcuI | CTGAAG | 5 cut(s) | 1755, 2835, 3748, 4643, 4982 |
| AcyI | GRCGYC | 1 cut(s) | 3373 |
| AdeI | CACNNNGTG | 5 cut(s) | 2908, 5081, 5314, 5411, 5475 |
| AflIII | ACRYGT | 3 cut(s) | 1901, 2348, 3636 |
| AhlI | ACTAGT | 2 cut(s) | 4190, 4919 |
| AjiI | CACGTC | 1 cut(s) | 930 |
| AjnI | CCWGG | 5 cut(s) | 3485, 4891, 5125, 5407, 5604 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 161, 193 |
| AleI | CACNNNNGTG | 1 cut(s) | 1936 |
| Alw21I | GWGCWC | 5 cut(s) | 802, 3554, 5014, 5310, 5812 |
| Alw26I | GTCTC | 5 cut(s) | 1641, 1940, 2368, 3201, 4181 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 998, 2813, 3788 |
| AoxI | GGCC | 6 cut(s) | 483, 572, 831, 3710, 4715, 4889 |
| AseI | ATTAAT | 1 cut(s) | 1473 |
| Asp700I | GAANNNNTTC | 5 cut(s) | 499, 719, 2294, 4551, 4656 |
| AspLEI | GCGC | 1 cut(s) | 3375 |
| AspS9I | GGNCC | 4 cut(s) | 573, 831, 2819, 4889 |
| AsuC2I | CCSGG | 4 cut(s) | 30, 771, 4586, 4887 |
| AsuNHI | GCTAGC | 1 cut(s) | 4405 |
| AvaII | GGWCC | 1 cut(s) | 2819 |
| AxyI | CCTNAGG | 3 cut(s) | 123, 375, 1182 |
| BaeGI | GKGCMC | 2 cut(s) | 621, 4488 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 2200, 2233, 5764, 5797 |
| BalI | TGGCCA | 2 cut(s) | 485, 4717 |
| BamHI | GGATCC | 3 cut(s) | 3482, 3850, 5748 |
| BanI | GGYRCC | 2 cut(s) | 3178, 3372 |
| BanII | GRGCYC | 2 cut(s) | 1191, 1290 |
| BbsI | GAAGAC | 2 cut(s) | 1796, 5492 |
| Bbv12I | GWGCWC | 5 cut(s) | 802, 3554, 5014, 5310, 5812 |
| BceAI | ACGGC | 1 cut(s) | 5230 |
| BciT130I | CCWGG | 5 cut(s) | 3487, 4893, 5127, 5409, 5606 |
| BciVI | GTATCC | 4 cut(s) | 483, 778, 2021, 5765 |
| BclI | TGATCA | 3 cut(s) | 2521, 4492, 4735 |
| BcnI | CCSGG | 4 cut(s) | 30, 771, 4586, 4887 |
| BcoDI | GTCTC | 5 cut(s) | 1641, 1940, 2368, 3201, 4181 |
| BcuI | ACTAGT | 2 cut(s) | 4190, 4919 |
| BfoI | RGCGCY | 1 cut(s) | 3376 |
| BfuAI | ACCTGC | 5 cut(s) | 144, 293, 904, 3847, 4264 |
| BfuI | GTATCC | 4 cut(s) | 483, 778, 2021, 5765 |
| BglII | AGATCT | 1 cut(s) | 2087 |
| BlpI | GCTNAGC | 1 cut(s) | 4410 |
| BmcAI | AGTACT | 1 cut(s) | 5756 |
| Bme1390I | CCNGG | 9 cut(s) | 30, 771, 3487, 4586, 4887, 4893, 5127, 5409, 5606 |
| Bme18I | GGWCC | 1 cut(s) | 2819 |
| BmgBI | CACGTC | 1 cut(s) | 930 |
| BmgT120I | GGNCC | 4 cut(s) | 573, 831, 2819, 4889 |
| BmrFI | CCNGG | 9 cut(s) | 30, 771, 3487, 4586, 4887, 4893, 5127, 5409, 5606 |
| BmrI | ACTGGG | 3 cut(s) | 2211, 4264, 4631 |
| BmtI | GCTAGC | 1 cut(s) | 4409 |
| BmuI | ACTGGG | 3 cut(s) | 2211, 4264, 4631 |
| BpiI | GAAGAC | 2 cut(s) | 1796, 5492 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 2741, 2773 |
| BpmI | CTGGAG | 2 cut(s) | 1966, 3672 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 4410 |
| BpuEI | CTTGAG | 9 cut(s) | 322, 462, 649, 1225, 1324, 2295, 3264, 3291, 5264 |
| BpuMI | CCSGG | 4 cut(s) | 30, 771, 4586, 4887 |
| Bsa29I | ATCGAT | 2 cut(s) | 1062, 2602 |
| BsaAI | YACGTR | 1 cut(s) | 1904 |
| BsaBI | GATNNNNATC | 4 cut(s) | 753, 1425, 2279, 5334 |
| BsaHI | GRCGYC | 1 cut(s) | 3373 |
| BsaWI | WCCGGW | 3 cut(s) | 559, 1543, 3091 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 3115, 3145 |
| Bse118I | RCCGGY | 1 cut(s) | 67 |
| Bse21I | CCTNAGG | 3 cut(s) | 123, 375, 1182 |
| Bse3DI | GCAATG | 5 cut(s) | 297, 2641, 2889, 4822, 5574 |
| Bse8I | GATNNNNATC | 4 cut(s) | 753, 1425, 2279, 5334 |
| BseBI | CCWGG | 5 cut(s) | 3487, 4893, 5127, 5409, 5606 |
| BseCI | ATCGAT | 2 cut(s) | 1062, 2602 |
| BseJI | GATNNNNATC | 4 cut(s) | 753, 1425, 2279, 5334 |
| BseMI | GCAATG | 5 cut(s) | 297, 2641, 2889, 4822, 5574 |
| BseRI | GAGGAG | 7 cut(s) | 276, 1114, 1629, 1659, 1958, 4848, 5120 |
| BseSI | GKGCMC | 2 cut(s) | 621, 4488 |
| BsgI | GTGCAG | 3 cut(s) | 984, 4777, 5497 |
| BshFI | GGCC | 6 cut(s) | 485, 574, 833, 3712, 4717, 4891 |
| BshNI | GGYRCC | 2 cut(s) | 3178, 3372 |
| BshVI | ATCGAT | 2 cut(s) | 1062, 2602 |
| BsiHKAI | GWGCWC | 5 cut(s) | 802, 3554, 5014, 5310, 5812 |
| BsiSI | CCGG | 8 cut(s) | 29, 68, 560, 770, 1544, 3092, 4586, 4886 |
| BslFI | GGGAC | 4 cut(s) | 1828, 3082, 4043, 5554 |
| BsmAI | GTCTC | 5 cut(s) | 1641, 1940, 2368, 3201, 4181 |
| BsmFI | GGGAC | 4 cut(s) | 1828, 3082, 4043, 5554 |
| BsmI | GAATGC | 4 cut(s) | 856, 1177, 2158, 3102 |
| BsnI | GGCC | 6 cut(s) | 485, 574, 833, 3712, 4717, 4891 |
| Bsp1286I | GDGCHC | 9 cut(s) | 621, 802, 1191, 1290, 3554, 4488, 5014, 5310, 5812 |
| Bsp1407I | TGTACA | 1 cut(s) | 172 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 4410 |
| Bsp19I | CCATGG | 1 cut(s) | 4450 |
| BspACI | CCGC | 5 cut(s) | 275, 782, 1082, 5256, 5843 |
| BspANI | GGCC | 6 cut(s) | 485, 574, 833, 3712, 4717, 4891 |
| BspDI | ATCGAT | 2 cut(s) | 1062, 2602 |
| BspMAI | CTGCAG | 6 cut(s) | 394, 1003, 1162, 2137, 3196, 3319 |
| BspMI | ACCTGC | 5 cut(s) | 144, 293, 904, 3847, 4264 |
| BspOI | GCTAGC | 1 cut(s) | 4409 |
| BspQI | GCTCTTC | 1 cut(s) | 4895 |
| BspT107I | GGYRCC | 2 cut(s) | 3178, 3372 |
| BsrDI | GCAATG | 5 cut(s) | 297, 2641, 2889, 4822, 5574 |
| BsrFI | RCCGGY | 1 cut(s) | 67 |
| BsrGI | TGTACA | 1 cut(s) | 172 |
| BssAI | RCCGGY | 1 cut(s) | 67 |
| BssNAI | GTATAC | 2 cut(s) | 1311, 5698 |
| BssNI | GRCGYC | 1 cut(s) | 3373 |
| BssT1I | CCWWGG | 6 cut(s) | 59, 2869, 3726, 4450, 5226, 5660 |
| Bst1107I | GTATAC | 2 cut(s) | 1311, 5698 |
| Bst2UI | CCWGG | 5 cut(s) | 3487, 4893, 5127, 5409, 5606 |
| Bst6I | CTCTTC | 4 cut(s) | 93, 2393, 4895, 5868 |
| BstACI | GRCGYC | 1 cut(s) | 3373 |
| BstAPI | GCANNNNNTGC | 7 cut(s) | 449, 2111, 2275, 2410, 2908, 3185, 5630 |
| BstAUI | TGTACA | 1 cut(s) | 172 |
| BstBAI | YACGTR | 1 cut(s) | 1904 |
| BstC8I | GCNNGC | 9 cut(s) | 141, 572, 1158, 1761, 2809, 2896, 2900, 4407, 4957 |
| BstDSI | CCRYGG | 3 cut(s) | 576, 3804, 4450 |
| BstEII | GGTNACC | 1 cut(s) | 696 |
| BstH2I | RGCGCY | 1 cut(s) | 3376 |
| BstHHI | GCGC | 1 cut(s) | 3375 |
| BstMAI | GTCTC | 5 cut(s) | 1641, 1940, 2368, 3201, 4181 |
| BstNI | CCWGG | 5 cut(s) | 3487, 4893, 5127, 5409, 5606 |
| BstPI | GGTNACC | 1 cut(s) | 696 |
| BstSCI | CCNGG | 9 cut(s) | 28, 769, 3485, 4584, 4885, 4891, 5125, 5407, 5604 |
| BstSLI | GKGCMC | 2 cut(s) | 621, 4488 |
| BstV2I | GAAGAC | 2 cut(s) | 1796, 5492 |
| BstX2I | RGATCY | 7 cut(s) | 2087, 3358, 3482, 3850, 3908, 5203, 5748 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 841, 3650, 5667 |
| BstYI | RGATCY | 7 cut(s) | 2087, 3358, 3482, 3850, 3908, 5203, 5748 |
| BstZ17I | GTATAC | 2 cut(s) | 1311, 5698 |
| Bsu15I | ATCGAT | 2 cut(s) | 1062, 2602 |
| Bsu36I | CCTNAGG | 3 cut(s) | 123, 375, 1182 |
| BsuI | GTATCC | 4 cut(s) | 483, 778, 2021, 5765 |
| BsuRI | GGCC | 6 cut(s) | 485, 574, 833, 3712, 4717, 4891 |
| BsuTUI | ATCGAT | 2 cut(s) | 1062, 2602 |
| BtgI | CCRYGG | 3 cut(s) | 576, 3804, 4450 |
| BtrI | CACGTC | 1 cut(s) | 930 |
| BtsI | GCAGTG | 2 cut(s) | 4565, 5485 |
| BveI | ACCTGC | 5 cut(s) | 144, 293, 904, 3847, 4264 |
| Cac8I | GCNNGC | 9 cut(s) | 141, 572, 1158, 1761, 2809, 2896, 2900, 4407, 4957 |
| CaiI | CAGNNNCTG | 3 cut(s) | 998, 2813, 3788 |
| CfoI | GCGC | 1 cut(s) | 3375 |
| Cfr10I | RCCGGY | 1 cut(s) | 67 |
| Cfr13I | GGNCC | 4 cut(s) | 573, 831, 2819, 4889 |
| ClaI | ATCGAT | 2 cut(s) | 1062, 2602 |
| CseI | GACGC | 1 cut(s) | 1682 |
| CsiI | ACCWGGT | 1 cut(s) | 5407 |
| DinI | GGCGCC | 1 cut(s) | 3374 |
| DraIII | CACNNNGTG | 5 cut(s) | 2908, 5081, 5314, 5411, 5475 |
| EaeI | YGGCCR | 2 cut(s) | 483, 4715 |
| Eam1104I | CTCTTC | 4 cut(s) | 93, 2393, 4895, 5868 |
| EarI | CTCTTC | 4 cut(s) | 93, 2393, 4895, 5868 |
| Eco130I | CCWWGG | 6 cut(s) | 59, 2869, 3726, 4450, 5226, 5660 |
| Eco24I | GRGCYC | 2 cut(s) | 1191, 1290 |
| Eco32I | GATATC | 1 cut(s) | 3427 |
| Eco47I | GGWCC | 1 cut(s) | 2819 |
| Eco57I | CTGAAG | 5 cut(s) | 1755, 2835, 3748, 4643, 4982 |
| Eco81I | CCTNAGG | 3 cut(s) | 123, 375, 1182 |
| Eco91I | GGTNACC | 1 cut(s) | 696 |
| EcoO109I | RGGNCCY | 1 cut(s) | 2819 |
| EcoO65I | GGTNACC | 1 cut(s) | 696 |
| EcoRI | GAATTC | 9 cut(s) | 161, 1680, 2290, 3217, 3462, 4416, 4424, 5060, 5422 |
| EcoRII | CCWGG | 5 cut(s) | 3485, 4891, 5125, 5407, 5604 |
| EcoRV | GATATC | 1 cut(s) | 3427 |
| EcoT14I | CCWWGG | 6 cut(s) | 59, 2869, 3726, 4450, 5226, 5660 |
| EcoT22I | ATGCAT | 3 cut(s) | 3104, 3190, 4822 |
| EcoT38I | GRGCYC | 2 cut(s) | 1191, 1290 |
| EgeI | GGCGCC | 1 cut(s) | 3374 |
| EheI | GGCGCC | 1 cut(s) | 3374 |
| ErhI | CCWWGG | 6 cut(s) | 59, 2869, 3726, 4450, 5226, 5660 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 2736, 2768, 5477, 5509 |
| FaqI | GGGAC | 4 cut(s) | 1828, 3082, 4043, 5554 |
| FauI | CCCGC | 1 cut(s) | 1089 |
| FauNDI | CATATG | 2 cut(s) | 3856, 5187 |
| FbaI | TGATCA | 3 cut(s) | 2521, 4492, 4735 |
| FblI | GTMKAC | 5 cut(s) | 932, 1310, 2880, 5293, 5697 |
| FriOI | GRGCYC | 2 cut(s) | 1191, 1290 |
| GlaI | GCGC | 1 cut(s) | 3374 |
| GsuI | CTGGAG | 2 cut(s) | 1966, 3672 |
| HaeII | RGCGCY | 1 cut(s) | 3376 |
| HaeIII | GGCC | 6 cut(s) | 485, 574, 833, 3712, 4717, 4891 |
| HapII | CCGG | 8 cut(s) | 29, 68, 560, 770, 1544, 3092, 4586, 4886 |
| HgaI | GACGC | 1 cut(s) | 1682 |
| HhaI | GCGC | 1 cut(s) | 3375 |
| Hin1I | GRCGYC | 1 cut(s) | 3373 |
| Hin6I | GCGC | 1 cut(s) | 3373 |
| HinP1I | GCGC | 1 cut(s) | 3373 |
| HincII | GTYRAC | 9 cut(s) | 436, 879, 2020, 2209, 2953, 4019, 4252, 4591, 5294 |
| HindII | GTYRAC | 9 cut(s) | 436, 879, 2020, 2209, 2953, 4019, 4252, 4591, 5294 |
| HindIII | AAGCTT | 1 cut(s) | 207 |
| HpaII | CCGG | 8 cut(s) | 29, 68, 560, 770, 1544, 3092, 4586, 4886 |
| Hpy99I | CGWCG | 1 cut(s) | 2394 |
| HpyCH4IV | ACGT | 9 cut(s) | 399, 432, 929, 1373, 1903, 2728, 2923, 4775, 5775 |
| HpySE526I | ACGT | 9 cut(s) | 399, 432, 929, 1373, 1903, 2728, 2923, 4775, 5775 |
| Hsp92I | GRCGYC | 1 cut(s) | 3373 |
| HspAI | GCGC | 1 cut(s) | 3373 |
| KasI | GGCGCC | 1 cut(s) | 3372 |
| Ksp22I | TGATCA | 3 cut(s) | 2521, 4492, 4735 |
| LguI | GCTCTTC | 1 cut(s) | 4895 |
| MabI | ACCWGGT | 1 cut(s) | 5407 |
| MaeII | ACGT | 9 cut(s) | 399, 432, 929, 1373, 1903, 2728, 2923, 4775, 5775 |
| MfeI | CAATTG | 4 cut(s) | 176, 219, 948, 2691 |
| MflI | RGATCY | 7 cut(s) | 2087, 3358, 3482, 3850, 3908, 5203, 5748 |
| MhlI | GDGCHC | 9 cut(s) | 621, 802, 1191, 1290, 3554, 4488, 5014, 5310, 5812 |
| MlsI | TGGCCA | 2 cut(s) | 485, 4717 |
| MluNI | TGGCCA | 2 cut(s) | 485, 4717 |
| Mly113I | GGCGCC | 1 cut(s) | 3373 |
| MlyI | GAGTC | 9 cut(s) | 619, 998, 1141, 1585, 2750, 2876, 2948, 4316, 4688 |
| MmeI | TCCRAC | 7 cut(s) | 238, 323, 482, 1938, 2445, 4582, 5325 |
| Mox20I | TGGCCA | 2 cut(s) | 485, 4717 |
| Mph1103I | ATGCAT | 3 cut(s) | 3104, 3190, 4822 |
| MroXI | GAANNNNTTC | 5 cut(s) | 499, 719, 2294, 4551, 4656 |
| MscI | TGGCCA | 2 cut(s) | 485, 4717 |
| MslI | CAYNNNNRTG | 6 cut(s) | 603, 624, 1047, 1936, 3948, 5019 |
| Msp20I | TGGCCA | 2 cut(s) | 485, 4717 |
| MspA1I | CMGCKG | 4 cut(s) | 389, 1163, 4075, 5448 |
| MspI | CCGG | 8 cut(s) | 29, 68, 560, 770, 1544, 3092, 4586, 4886 |
| MspR9I | CCNGG | 9 cut(s) | 30, 771, 3487, 4586, 4887, 4893, 5127, 5409, 5606 |
| MunI | CAATTG | 4 cut(s) | 176, 219, 948, 2691 |
| Mva1269I | GAATGC | 4 cut(s) | 856, 1177, 2158, 3102 |
| MvaI | CCWGG | 5 cut(s) | 3487, 4893, 5127, 5409, 5606 |
| NarI | GGCGCC | 1 cut(s) | 3373 |
| NciI | CCSGG | 4 cut(s) | 30, 771, 4586, 4887 |
| NcoI | CCATGG | 1 cut(s) | 4450 |
| NdeI | CATATG | 2 cut(s) | 3856, 5187 |
| NheI | GCTAGC | 1 cut(s) | 4405 |
| NsiI | ATGCAT | 3 cut(s) | 3104, 3190, 4822 |
| OliI | CACNNNNGTG | 1 cut(s) | 1936 |
| PaeI | GCATGC | 1 cut(s) | 2902 |
| PaqCI | CACCTGC | 3 cut(s) | 144, 904, 4264 |
| PciI | ACATGT | 2 cut(s) | 2348, 3636 |
| PciSI | GCTCTTC | 1 cut(s) | 4895 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 2734 |
| PctI | GAATGC | 4 cut(s) | 856, 1177, 2158, 3102 |
| PdmI | GAANNNNTTC | 5 cut(s) | 499, 719, 2294, 4551, 4656 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 5591 |
| PleI | GAGTC | 9 cut(s) | 618, 997, 1141, 1584, 2750, 2876, 2948, 4316, 4688 |
| PluTI | GGCGCC | 1 cut(s) | 3376 |
| PpsI | GAGTC | 9 cut(s) | 618, 997, 1141, 1584, 2750, 2876, 2948, 4316, 4688 |
| Ppu21I | YACGTR | 1 cut(s) | 1904 |
| PpuMI | RGGWCCY | 1 cut(s) | 2819 |
| PscI | ACATGT | 2 cut(s) | 2348, 3636 |
| PshBI | ATTAAT | 1 cut(s) | 1473 |
| PsiI | TTATAA | 1 cut(s) | 4346 |
| Psp5II | RGGWCCY | 1 cut(s) | 2819 |
| Psp6I | CCWGG | 5 cut(s) | 3485, 4891, 5125, 5407, 5604 |
| PspEI | GGTNACC | 1 cut(s) | 696 |
| PspGI | CCWGG | 5 cut(s) | 3485, 4891, 5125, 5407, 5604 |
| PspPI | GGNCC | 4 cut(s) | 573, 831, 2819, 4889 |
| PspPPI | RGGWCCY | 1 cut(s) | 2819 |
| PstI | CTGCAG | 6 cut(s) | 394, 1003, 1162, 2137, 3196, 3319 |
| PstNI | CAGNNNCTG | 3 cut(s) | 998, 2813, 3788 |
| PsuI | RGATCY | 7 cut(s) | 2087, 3358, 3482, 3850, 3908, 5203, 5748 |
| PvuII | CAGCTG | 4 cut(s) | 389, 1163, 4075, 5448 |
| RseI | CAYNNNNRTG | 6 cut(s) | 603, 624, 1047, 1936, 3948, 5019 |
| SalI | GTCGAC | 1 cut(s) | 5292 |
| SapI | GCTCTTC | 1 cut(s) | 4895 |
| Sau96I | GGNCC | 4 cut(s) | 573, 831, 2819, 4889 |
| ScaI | AGTACT | 1 cut(s) | 5756 |
| SchI | GAGTC | 9 cut(s) | 619, 998, 1141, 1585, 2750, 2876, 2948, 4316, 4688 |
| ScrFI | CCNGG | 9 cut(s) | 30, 771, 3487, 4586, 4887, 4893, 5127, 5409, 5606 |
| SduI | GDGCHC | 9 cut(s) | 621, 802, 1191, 1290, 3554, 4488, 5014, 5310, 5812 |
| SexAI | ACCWGGT | 1 cut(s) | 5407 |
| SfoI | GGCGCC | 1 cut(s) | 3374 |
| SinI | GGWCC | 1 cut(s) | 2819 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 603, 624, 1047, 1936, 3948, 5019 |
| SmlI | CTYRAG | 9 cut(s) | 337, 477, 664, 1240, 1339, 2310, 3279, 3306, 5279 |
| SmoI | CTYRAG | 9 cut(s) | 337, 477, 664, 1240, 1339, 2310, 3279, 3306, 5279 |
| SpeI | ACTAGT | 2 cut(s) | 4190, 4919 |
| SphI | GCATGC | 1 cut(s) | 2902 |
| SsiI | CCGC | 5 cut(s) | 275, 782, 1082, 5256, 5843 |
| SspDI | GGCGCC | 1 cut(s) | 3372 |
| SspI | AATATT | 5 cut(s) | 1891, 3920, 4163, 4201, 5724 |
| StyD4I | CCNGG | 9 cut(s) | 28, 769, 3485, 4584, 4885, 4891, 5125, 5407, 5604 |
| StyI | CCWWGG | 6 cut(s) | 59, 2869, 3726, 4450, 5226, 5660 |
| TaiI | ACGT | 9 cut(s) | 402, 435, 932, 1376, 1906, 2731, 2926, 4778, 5778 |
| TaqII | GACCGA | 1 cut(s) | 36 |
| TatI | WGTACW | 6 cut(s) | 172, 1209, 2483, 3454, 5754, 5801 |
| TauI | GCSGC | 1 cut(s) | 5258 |
| TspGWI | ACGGA | 3 cut(s) | 81, 3793, 5314 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 5591 |
| VpaK11BI | GGWCC | 1 cut(s) | 2819 |
| VspI | ATTAAT | 1 cut(s) | 1473 |
| XbaI | TCTAGA | 1 cut(s) | 1417 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 3733 |
| XmiI | GTMKAC | 5 cut(s) | 932, 1310, 2880, 5293, 5697 |
| XmnI | GAANNNNTTC | 5 cut(s) | 499, 719, 2294, 4551, 4656 |
| ZrmI | AGTACT | 1 cut(s) | 5756 |
| Zsp2I | ATGCAT | 3 cut(s) | 3104, 3190, 4822 |