Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0002428

Physical Location & Seq

Genomic Coordinates Reverse (-)

3797084 .. 3799482

Gene Structure 2399 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0031800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

ATGCGTGAAGAAACTGCAACTCTTTCTAATGTAAAATTGGAACAAGGATCAGTGACAACACTAATTGAGGAAAAGGGCATTGTCAAAGGAGTAATTTACAAGAACAAGGCTGGAGAGGAGATGCGAACATATGCTCCACTAACAATCGTGTGTGATGGTTGCTTTTCAAATCTGCGCAAATCTCTCAGTGCTCCAAAGGTTGAAAGTCCATCTTGTTTTGTTGGTTTGATCTTGGAGAACTGTGAGCTTCCACACGCAAATCATGGACATGTCATTTTGGGAGACCCTTCACCCATCCTGTTTTATCCTATCAGTTCCACTGAGGTTCGTTGTTTGGTGGATATACCGGGAACAAAAGTACCTTCAGTTTCTAGTGGTGAAATGGTTAAGTATTTGAAAAGCAAGGTGGCTCCTCAGATTCCACGTCAGCTCTACAATGCTTTTATGGCTGCCATCGACAAGGGAAATATCAGAACAATGCAAAACAAAAGCATGGCTGCTAATCCTCTTCCCACTCCTGGTGCAATTCTATTGGGGGATTCGTTCAACATGAGGCATCCATTAACAGGAGGAGGAATGACAGTGGCTCTTTCAGATATTGTTCTTCTCCGCAATCTGCTTAGACCTCTACATGATCTGAATGATGCACCTGCTTTGTGCAACTACCTTGAGTCATTCTACACATTGCGTAAGCCTGTGTCATCCACCATAAACACATTGGCAGGTGCTTTGTATAAGGTGTTTTGTGCATCACCTGATCAGGCAAGACAGGAAATGCGTGAAGCCTGTTTTGGCTATTTGAGCCTTGGAGGCATCTGTTCATATGGACCAGTATCTCTTCTTTCTGGTCTTAACCCTCGTCCGCTGCACTTGTTTCTCCATTTCTTTGCTGTTGCTATCTATGGTGTAGGGCGTTTAATGCTTCCATTCCCTTCACCCAAACGCATGTGGCTTGGGGCTAGATTGATCACAAGTGCATCAGACATTATATTCCCCATAATAAAAGGTGAAGGAGTTAGACAGATGTTTTTTCCTGCCACAGTGCCAGCATATTACAGATCCCCTCCTATTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0003906 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006349 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010468 GO:0016787 GO:0016798 GO:0016799 GO:0019104 GO:0019222 GO:0022414 GO:0032259 GO:0032501 GO:0032502 GO:0034641 GO:0040029 GO:0043076 GO:0043078 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0044728 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0060255 GO:0061458 GO:0065007 GO:0071514 GO:0071704 GO:0090304 GO:0140097 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Perm-CXXC RRM_DME

Protein Analysis

358

Amino Acids

39.13

Weight (kDa)

9.07

Isoelectric Point (pI)

47.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAD_binding_3	PF01494	17 - 206	1.2e-07	FAD binding domain
SE	PF08491	45 - 317	6.8e-119	Squalene epoxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002428)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04560 AT5G04560 AT5G04560
fragaria_vesca	FvH4_2g10170 FvH4_2g10170 FvH4_2g10170 FvH4_2g10170 FvH4_2g10170
malus_domestica	MD02G1245300.v1.1 MD07G1071800.v1.1 MD09G1259000.v1.1 MD09G1259100.v1.1 MD17G1253500.v1.1 MD17G1253600.v1.1
prunus_persica	Prupe.2G089400_v2.0.a1 Prupe.7G005000_v2.0.a1 Prupe.7G005000_v2.0.a1 Prupe.7G005000_v2.0.a1 Prupe.7G005000_v2.0.a1 Prupe.7G005000_v2.0.a1 Prupe.7G005000_v2.0.a1
pyrus_communis	pycom02g21110 pycom09g17380 pycom17g25620 pycom17g25630
rosa_chinensis	RchiOBHm_Chr6g0267351 RchiOBHm_Chr6g0267361
rosa_laevigata	RLG00000014013
rosa_multiflora	Rmu_sc0000746.1_g000002 Rmu_sc0019664.1_g000001
rosa_roxburghii	Rroxscaffold_7G00200830
rosa_rugosa	Rorug06G0031600 Rorug06G0031700 Rorug06G0031800 Rorug06G0031900 Rorug06G0032000
rosa_samantha	Rh6AG153500 Rh6BG153200 Rh6CG149300 Rh6DG137600
rosa_wichuraiana	Rw6G013200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	658, 713
Acc16I	TGCGCA	1 cut(s)	176
Acc36I	ACCTGC	2 cut(s)	658, 713
AciI	CCGC	2 cut(s)	610, 863
AclWI	GGATC	2 cut(s)	55, 1053
AcuI	CTGAAG	1 cut(s)	348
AfaI	GTAC	1 cut(s)	360
AfiI	CCNNNNNNNGG	2 cut(s)	518, 566
AflIII	ACRYGT	1 cut(s)	268
AgsI	TTSAA	4 cut(s)	168, 203, 397, 547
AjiI	CACGTC	1 cut(s)	425
AjnI	CCWGG	1 cut(s)	517
AjuI	GAANNNNNNNTTGG	2 cut(s)	774, 806
AloI	GAACNNNNNNTCC	2 cut(s)	118, 150
AluBI	AGCT	2 cut(s)	247, 430
AluI	AGCT	2 cut(s)	247, 430
Alw21I	GWGCWC	1 cut(s)	193
Alw26I	GTCTC	1 cut(s)	276
AlwI	GGATC	2 cut(s)	55, 1053
ApeKI	GCWGC	3 cut(s)	449, 497, 865
AspLEI	GCGC	1 cut(s)	177
AspS9I	GGNCC	1 cut(s)	827
AsuC2I	CCSGG	1 cut(s)	348
AsuHPI	GGTGA	5 cut(s)	282, 389, 744, 927, 1019
AvaII	GGWCC	1 cut(s)	827
BaeI	ACNNNNGTAYC	2 cut(s)	342, 375
Bbv12I	GWGCWC	1 cut(s)	193
BbvI	GCAGC	3 cut(s)	436, 484, 852
BccI	CCATC	4 cut(s)	149, 217, 302, 461
BciT130I	CCWGG	1 cut(s)	519
BclI	TGATCA	2 cut(s)	757, 966
BcnI	CCSGG	1 cut(s)	348
BcoDI	GTCTC	1 cut(s)	276
BfaI	CTAG	2 cut(s)	372, 960
BfuAI	ACCTGC	2 cut(s)	658, 713
BglI	GCCNNNNNGGC	1 cut(s)	810
BisI	GCNGC	3 cut(s)	450, 498, 866
BlsI	GCNGC	3 cut(s)	451, 499, 867
Bme1390I	CCNGG	2 cut(s)	348, 519
Bme18I	GGWCC	1 cut(s)	827
BmgBI	CACGTC	1 cut(s)	425
BmgT120I	GGNCC	1 cut(s)	827
BmiI	GGNNCC	1 cut(s)	411
BmrFI	CCNGG	2 cut(s)	348, 519
BmsI	GCATC	6 cut(s)	111, 565, 634, 758, 822, 986
BpmI	CTGGAG	1 cut(s)	132
BpuEI	CTTGAG	1 cut(s)	689
BpuMI	CCSGG	1 cut(s)	348
BsaI	GGTCTC	1 cut(s)	276
BsaJI	CCNNGG	1 cut(s)	805
BsaXI	ACNNNNNCTCC	2 cut(s)	118, 148
Bsc4I	CCNNNNNNNGG	2 cut(s)	518, 566
Bse1I	ACTGG	1 cut(s)	830
Bse3DI	GCAATG	1 cut(s)	683
BseBI	CCWGG	1 cut(s)	519
BseDI	CCNNGG	1 cut(s)	805
BseGI	GGATG	3 cut(s)	294, 556, 701
BseLI	CCNNNNNNNGG	2 cut(s)	518, 566
BseMI	GCAATG	1 cut(s)	683
BseMII	CTCAG	3 cut(s)	199, 312, 428
BseNI	ACTGG	1 cut(s)	830
BseRI	GAGGAG	3 cut(s)	131, 402, 585
BseXI	GCAGC	3 cut(s)	436, 484, 852
BsgI	GTGCAG	1 cut(s)	851
BsiHKAI	GWGCWC	1 cut(s)	193
BsiSI	CCGG	1 cut(s)	347
BslI	CCNNNNNNNGG	2 cut(s)	518, 566
BsmAI	GTCTC	1 cut(s)	276
Bso31I	GGTCTC	1 cut(s)	276
Bsp1286I	GDGCHC	1 cut(s)	193
Bsp143I	GATC	6 cut(s)	47, 228, 634, 757, 966, 1058
BspACI	CCGC	2 cut(s)	610, 863
BspCNI	CTCAG	3 cut(s)	198, 313, 427
BspLI	GGNNCC	1 cut(s)	411
BspMI	ACCTGC	2 cut(s)	658, 713
BspPI	GGATC	2 cut(s)	55, 1053
BspTNI	GGTCTC	1 cut(s)	276
BsrDI	GCAATG	1 cut(s)	683
BsrI	ACTGG	1 cut(s)	830
BssECI	CCNNGG	1 cut(s)	805
BssMI	GATC	6 cut(s)	47, 228, 634, 757, 966, 1058
BssT1I	CCWWGG	1 cut(s)	805
Bst2UI	CCWGG	1 cut(s)	519
Bst4CI	ACNGT	3 cut(s)	242, 583, 1042
Bst6I	CTCTTC	2 cut(s)	513, 843
BstC8I	GCNNGC	1 cut(s)	1047
BstDEI	CTNAG	4 cut(s)	185, 321, 414, 620
BstF5I	GGATG	3 cut(s)	294, 556, 701
BstHHI	GCGC	1 cut(s)	177
BstKTI	GATC	6 cut(s)	50, 231, 637, 760, 969, 1061
BstMAI	GTCTC	1 cut(s)	276
BstMBI	GATC	6 cut(s)	47, 228, 634, 757, 966, 1058
BstMWI	GCNNNNNNNGC	4 cut(s)	446, 801, 810, 919
BstNI	CCWGG	1 cut(s)	519
BstNSI	RCATGY	2 cut(s)	272, 949
BstSCI	CCNGG	2 cut(s)	346, 517
BstV1I	GCAGC	3 cut(s)	436, 484, 852
BstX2I	RGATCY	1 cut(s)	1058
BstYI	RGATCY	1 cut(s)	1058
BtrI	CACGTC	1 cut(s)	425
BtsCI	GGATG	3 cut(s)	294, 556, 701
BtsIMutI	CAGTG	5 cut(s)	57, 193, 318, 588, 1047
BveI	ACCTGC	2 cut(s)	658, 713
Cac8I	GCNNGC	1 cut(s)	1047
CfoI	GCGC	1 cut(s)	177
Cfr13I	GGNCC	1 cut(s)	827
Csp6I	GTAC	1 cut(s)	359
CviAII	CATG	6 cut(s)	263, 269, 493, 550, 632, 946
CviQI	GTAC	1 cut(s)	359
DdeI	CTNAG	4 cut(s)	185, 321, 414, 620
DpnI	GATC	6 cut(s)	49, 230, 636, 759, 968, 1060
DpnII	GATC	6 cut(s)	47, 228, 634, 757, 966, 1058
Eam1104I	CTCTTC	2 cut(s)	513, 843
EarI	CTCTTC	2 cut(s)	513, 843
Eco130I	CCWWGG	1 cut(s)	805
Eco31I	GGTCTC	1 cut(s)	276
Eco47I	GGWCC	1 cut(s)	827
Eco57I	CTGAAG	1 cut(s)	348
EcoRII	CCWGG	1 cut(s)	517
EcoT14I	CCWWGG	1 cut(s)	805
ErhI	CCWWGG	1 cut(s)	805
FaeI	CATG	6 cut(s)	266, 272, 496, 553, 635, 949
FalI	AAGNNNNNCTT	2 cut(s)	196, 228
FatI	CATG	6 cut(s)	262, 268, 492, 549, 631, 945
FauNDI	CATATG	2 cut(s)	130, 823
FbaI	TGATCA	2 cut(s)	757, 966
Fnu4HI	GCNGC	3 cut(s)	450, 498, 866
FokI	GGATG	3 cut(s)	281, 543, 688
Fsp4HI	GCNGC	3 cut(s)	450, 498, 866
FspBI	CTAG	2 cut(s)	372, 960
FspI	TGCGCA	1 cut(s)	176
GlaI	GCGC	1 cut(s)	176
GluI	GCNGC	3 cut(s)	450, 498, 866
GsuI	CTGGAG	1 cut(s)	132
HapII	CCGG	1 cut(s)	347
HhaI	GCGC	1 cut(s)	177
Hin1II	CATG	6 cut(s)	266, 272, 496, 553, 635, 949
Hin6I	GCGC	1 cut(s)	175
HinP1I	GCGC	1 cut(s)	175
HinfI	GANTC	3 cut(s)	418, 539, 671
HpaII	CCGG	1 cut(s)	347
HphI	GGTGA	5 cut(s)	282, 389, 744, 927, 1019
Hpy188I	TCNGA	5 cut(s)	417, 473, 595, 639, 982
HpyAV	CCTTC	4 cut(s)	297, 372, 942, 1004
HpyCH4III	ACNGT	3 cut(s)	242, 583, 1042
HpyCH4IV	ACGT	1 cut(s)	424
HpyCH4V	TGCA	8 cut(s)	17, 481, 524, 647, 660, 749, 868, 977
HpyF10VI	GCNNNNNNNGC	4 cut(s)	446, 801, 810, 919
HpyF3I	CTNAG	4 cut(s)	185, 321, 414, 620
HpySE526I	ACGT	1 cut(s)	424
Hsp92II	CATG	6 cut(s)	266, 272, 496, 553, 635, 949
HspAI	GCGC	1 cut(s)	175
Ksp22I	TGATCA	2 cut(s)	757, 966
Kzo9I	GATC	6 cut(s)	47, 228, 634, 757, 966, 1058
LmnI	GCTCC	3 cut(s)	139, 196, 415
Lsp1109I	GCAGC	3 cut(s)	436, 484, 852
LweI	GCATC	6 cut(s)	111, 565, 634, 758, 822, 986
MaeI	CTAG	2 cut(s)	372, 960
MaeII	ACGT	1 cut(s)	424
MaeIII	GTNAC	1 cut(s)	52
MalI	GATC	6 cut(s)	49, 230, 636, 759, 968, 1060
MboI	GATC	6 cut(s)	47, 228, 634, 757, 966, 1058
MboII	GAAGA	4 cut(s)	20, 500, 596, 830
MflI	RGATCY	1 cut(s)	1058
MhlI	GDGCHC	1 cut(s)	193
MluCI	AATT	4 cut(s)	35, 63, 93, 525
MlyI	GAGTC	1 cut(s)	680
MseI	TTAA	4 cut(s)	387, 563, 852, 917
MslI	CAYNNNNRTG	1 cut(s)	267
MspA1I	CMGCKG	1 cut(s)	865
MspI	CCGG	1 cut(s)	347
MspR9I	CCNGG	2 cut(s)	348, 519
MvaI	CCWGG	1 cut(s)	519
MwoI	GCNNNNNNNGC	4 cut(s)	446, 801, 810, 919
NciI	CCSGG	1 cut(s)	348
NdeI	CATATG	2 cut(s)	130, 823
NdeII	GATC	6 cut(s)	47, 228, 634, 757, 966, 1058
NlaIII	CATG	6 cut(s)	266, 272, 496, 553, 635, 949
NlaIV	GGNNCC	1 cut(s)	411
NmuCI	GTSAC	1 cut(s)	52
NsbI	TGCGCA	1 cut(s)	176
NspI	RCATGY	2 cut(s)	272, 949
PaqCI	CACCTGC	2 cut(s)	658, 713
PciI	ACATGT	1 cut(s)	268
PfeI	GAWTC	2 cut(s)	418, 539
PkrI	GCNGC	3 cut(s)	451, 499, 867
PleI	GAGTC	1 cut(s)	679
PpsI	GAGTC	1 cut(s)	679
PscI	ACATGT	1 cut(s)	268
Psp6I	CCWGG	1 cut(s)	517
PspGI	CCWGG	1 cut(s)	517
PspN4I	GGNNCC	1 cut(s)	411
PspPI	GGNCC	1 cut(s)	827
PsuI	RGATCY	1 cut(s)	1058
RsaI	GTAC	1 cut(s)	360
RsaNI	GTAC	1 cut(s)	359
RseI	CAYNNNNRTG	1 cut(s)	267
SaqAI	TTAA	4 cut(s)	387, 563, 852, 917
SatI	GCNGC	3 cut(s)	450, 498, 866
Sau3AI	GATC	6 cut(s)	47, 228, 634, 757, 966, 1058
Sau96I	GGNCC	1 cut(s)	827
SchI	GAGTC	1 cut(s)	680
ScrFI	CCNGG	2 cut(s)	348, 519
SduI	GDGCHC	1 cut(s)	193
SfaNI	GCATC	6 cut(s)	111, 565, 634, 758, 822, 986
SinI	GGWCC	1 cut(s)	827
SmiMI	CAYNNNNRTG	1 cut(s)	267
SmlI	CTYRAG	1 cut(s)	668
SmoI	CTYRAG	1 cut(s)	668
Sse9I	AATT	4 cut(s)	35, 63, 93, 525
SsiI	CCGC	2 cut(s)	610, 863
SspMI	CTAG	2 cut(s)	372, 960
StyD4I	CCNGG	2 cut(s)	346, 517
StyI	CCWWGG	1 cut(s)	805
TaaI	ACNGT	3 cut(s)	242, 583, 1042
TaiI	ACGT	1 cut(s)	427
TaqI	TCGA	1 cut(s)	456
TasI	AATT	4 cut(s)	35, 63, 93, 525
TfiI	GAWTC	2 cut(s)	418, 539
Tru1I	TTAA	4 cut(s)	387, 563, 852, 917
Tru9I	TTAA	4 cut(s)	387, 563, 852, 917
TscAI	CASTG	5 cut(s)	57, 193, 325, 588, 1047
TseFI	GTSAC	1 cut(s)	52
TseI	GCWGC	3 cut(s)	449, 497, 865
Tsp45I	GTSAC	1 cut(s)	52
TspDTI	ATGAA	2 cut(s)	810, 1061
TspRI	CASTG	5 cut(s)	57, 193, 325, 588, 1047
VpaK11BI	GGWCC	1 cut(s)	827
XceI	RCATGY	2 cut(s)	272, 949
XcmI	CCANNNNNNNNNTGG	1 cut(s)	715
XspI	CTAG	2 cut(s)	372, 960

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.