Rh6BG153200

Transcriptional activator

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
Physical Location & Seq
Forward (+)
24731214 .. 24741667
10454 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG153200.1

Sequence Viewer

Length: 5784 bp
ATGAAGTTTGGAGGGGATTTTTCAGTTCCGGTGGATGAGGATTTTCGGTCCATGCCTCCTTGGGTACCGGTAACGCCCCAGAAGCCTCTTCCATTGAAACCTCACTCTATGCTGCTTAACCCCCATGGGAATCACCTACCAGCAGCAAATTGGCAACACGAATTGGGGAATGTACAATTGGGTGATACTTACAATGGCATGAGCCCAGCTATTAACCCAATTGTCCAGTTTCCTAGAAATGTTGGGTGTTATGGTGTTGATGGAGGTCTGGCTCTGCAGAATGGAATGACAAATCACATTCCAGGTTCATACTCACAGTTGCTTGGCAGTGACAGCTCAAGTTGGAACAATGAATCCTTCACACAACTACTACTTCAGGATAATGCAGCTGCAGTTTACGTTGCCTCTGCAGACAGGAATCTTAGCAGAAGTGTTGACATGGCCGCAAATGCACCTCTAACTCCGAAGTTGCATCCTCAAGTGGCCAACCAAAGAAACAATTCAAGTAGTTTCTTGCTGACCAACCAAAATTACAACAATGGTTCATACCCTTCGAGTGCGGTGATCAGCAGGCGCGCGGTTGTGGATTTCCCTTCTCTGTTTGATAACAGTCAGGGGCATTCCAATGTAGCTAATTGGTTGCTTAACAACGAAAATCACAGCTCAAGTTCAAACTTGTTGAGTAATGGTCACAGCTCACCCCATATAAGCCAGAATGTTTTCCCCATGCCCTTGCGACCGAGCTATGATCTAAACTTAAACTCCTCACCGAGAACAGAAGCCGATACTACTTCATGTGTTCCCAGCCAACTCCAATTCACACCATATAGGGCCAATCGTATGGAGAACAACCGTCTTTCGGCAATACAAACATCCTTGACAGATGAAAGCTCTAGCAAGGAAAACGACAAGCAGGTGGACTTTTTCACGTCTACAGGAGATGTAGCAATTCAGAAACATGGTGGAGACTTGCAGAATATCGTGGAGTCAGCTTCTGCAACCATTTCTACACCATACAAGGAAAATAAAGATTCTGACCATGAAAGTGACAGAGGGATTGATCTAAACCAGACAGCCCAGCACAAAACACCCAAGAGAAGGAAGCACAGGCCAAAAGTAATCATAGAAGGCAAACCCAAAAGGACTCCAAAGCCTGCAACTGCAAAGAATGCAGAGCCTAAGGAGTCCCGAACAGGAAAGAGGAAATACGTTAGAAAGAATGTCCAAAAGGAATCGTCAAGTCAACTGGTAGATGGTACGAGTGAAGCAACATACCATAATGCTGGAATGGCTGCAAAATCATGCAGGAGAGTTCTAGACTTTGATTTGGAAATGACCACAGTTGAAAAGCAGGGCAAAGCTGCTAGAAATAATCAGTCTAAAATGAAGTCTGCTAAGCTGATTGACCTAGAAAATGAAGTGATGGTAGAAAACCAGAGACTGGAATCTATGAGTCACCCTAGCCCTTCAATGAGTCATTTACCAAGTAACTATATAATTCTTCCAGAAGGACAAGAATCTGCAGTGCCTCATGCTACAAGAGGAGACACACAGATAAACAATTTGCATGTCACAAAAAGGCATGCGGATAGTCGATATGAATACGCTCCCATGCTGCAACATGGCCAGGCTGAAGGAGTAGGCAAACATGCCGTGCGAGCAAAGACTAATGGTGAAAACCATGAGAAGACTAAAGAAAGTGTTAATCAGGGTGCCTATCAATCAGCACTAAAAGCTCTGTCACCTGCTAGTGAAGGAAGGGGATCCAAGAGGGAATATTGTCATAATATTCAGCAGACACATCTTTGTTCCAATAATCTGTATAGTTCACTGTTGTGCCAGGAGACATTTGAATTGGATGGCCATCAGGAAAGTAGCTGCACTATCAGCAAAGCAAGCCATAAAAAGCAGAAAGTTGACAATCGATACTTGTCCATCCACGACATGCCGTTTAAAGTTACAGCAGTTGAGGAGGGTCTTGGAAGAGTTGAAAGAAAAAGGGCAAATGATGCCAACTCCAATGGATTTGCAGCAGCACTAAACCATACAATATTGAATTCTTACATTGGAAGTAACAGAATGAAAGAGAGAGAAAAGAATGGGTTCAACAAGTGTACCAGTGACAGGTTCATTGATTCTATAGCTTCTGAGCATGATTCGCCAAAGCAGCAGATGCCGTTCAAATCGAATTCTTGCAAAGAAATCACTCAAGTTCTTAGCTTCTCTACCAATTCCACAATGGAAACATGTAAGCAGCTTGTCTCATCATCTCCCAGAAAATCCTCTCGACGAGGTAAGAGGCAGGAATTGCAAACTCAGGAACCAAAGTCAGCAACGAAGCAGGCTGTGGTATCCACTGTATTGGAATCTGCTTTACCAAGTACAGATAAAATGCTGCAAGAACAGGATTTCTTGTATGATCATCAACAGTCTTCTGCAAAAACATTAGGGCTTCCGCTAAGAACAATATATCCTTCAATTATGGATGACATCATACATCGATTTAGTGTTCTGAGCATCAATGGGAGCTGCAATCAATTTCAGGAGCAAGAGCAAAATGCACTTGTTCCATACAAAGGAGATGGTGCAGTTGTTCCCTATGAAGGGTCTGAATATATTAAGAAACGTAAGCCACGGCCTAAAGTGGAGCTTGACTCAGAAACAAATAGGATTTGGAACCTTCTGATGGGGAAGGAAGGAAGTGAAGGCACTGAAGGACCTGACAAGCAAAAGGAGAAGTATTGGGGAGAGGAAAGAAAGGTTTTCCAAGGTCGAGTCGACTCATTCATTGCACGCATGCACCTTGTTCAAGGGGACAGACGTTTTTCACGGTGGAAAGGATCAGTTGTTGACTCAGTGATTGGAGTTTTCCTTACTCAAAATGTTTCAGACCATCTATCAAGCTCTGCCTTCATGTCTTTGGCAGCAAGATTTCCGCTAAAGTCAATGAGCAATCACCAAACACAAGACAAGGTTGGGACAGACATACTGGTTAAAGAACCAGAAGTATGCATTCCAATCCCAGATGATGCTACCAAATGGCCTGAAGAAAGAACAAGTCAACCAATCTATAACCCAGTCTCTATGACACCCTATGAATCTCCAGAACATCAGAGAGACAGTGAGACTTCCAGGACAGGAAAGAACTTAATGGAGGCACATAGTCAATGTTTGGAGGAAGAATTTGTATCATCTCAAGATTCTTTTGGCTCCTCAGTCACTCAAGGAACTGCAGGATTTAGATCATACTTGGTCTCCAATTCAGAAGCAGAAGGTCCTACCGCTCGGCGCCAACCCAACAAGGTTAGCTCTAATTCAGCTTACCCACCGATGGAGAAAGATATCGTATTTCAAGACTTTTACCATGAAGTACAAGGAAGTCCACTATTAGATGATGGATCCAGGCAGAGGCTTAAACAATGGGGGGAGCTAAAGACAAGATCAGACAGAATAGATGATTTCAGTGGCACTTGTTCAGTCACAAATCCAATCAATCTTGACAACCGAAAAATGCGACCATCAATTGCTCCTTCCAGCAGCAATCATTTACAGATGTACCTAAATTCTGGAGAACCAGAGCCATTTGGATTGGAAAGTTTCAGTGAAGAAAGCATATCTTCTTGTTGGCATTCAACTGCTTCCAAGGTCAATGTGCAAAAAGATGACTATTACAAGAGCTTCAGATATAAGGAATTGTCAGGAACTGTTGTTAGTTCATCTGTCGAACAAAGTACTTTGTGGAGCTCTCAAGAACCTGCCACAAAGGATCCATATGGTGCTCTCAGACAGCACTCAAGTGACCAGCAAATTTATTGTCAGCCAAGACCCAGCAATGAATATTATCAACCTTCCAGCGAAAGTCATCAACATGAGGGGAACCAGACCTTCCAATTAGAGAAAAATTCATTCATAGAGCCTGTAAAACATAGTGAACAACTTCCAGGAAAGAAGAATGATGGCATGCAGCAAGTCCCAAATGTCAATCAGCTGAATAAGAAATCTTCAAATGCCGGAGATAGTATCTCTACAGTGAACAATGGATCGGTTAATTCAAATACAAAGGAGCAATCTTCCCATGAACGGTCACAGAATGAGATTGTTACTAATATTTCAAAAGGAAGGAAGAAAAAGTCAGAAAGTGACAAAAAGAATGCAGTTGACTGGGATAATTTAAGAACGCAGGTGCTGGCCGATGGTAGGAAAAAGGAAAGAAACAAAGATGCAATGGACTCGCTTGACTATGAAGCACTTATAAATGCTAATGTTAAAGAGATTTCTAATGCAATCAGGGAGCGAGGGATGAACAACATGCTAGCTGAGCGAATTCAGGACTTCCTAAATCGAGTGGTTAAAGACCATGGAAGCATCGATTTGGAATGGTTGAGAGATGTGCCCCCTGATAAAGCAAAGGATTATCTATTAAGTATTCGAGGTTTGGGCTTGAAAAGTGTGGAATGTGTTCGTCTTTTGACACTTCACCATCTTGCTTTCCCGGTTGATACAAATGTTGGAAGAATAGCAGTACGACTTGGATGGGTCCCCCTCCAACCATTACCTGAATCACTCCAGCTCCATCTCCTAGAACTGTACCCGATGCTGGAGTCAATTCAAAAGTATCTCTGGCCAAGATTATGCAAACTTGATCAATTAACCCTGTATGAGTTACACTACCAGATGATTACATTTGGAAAGGTTTTCTGCACAAAAAGTAAACCAAATTGCAACGCATGTCCAATGAGAGGCGAGTGCAGACACTTCGCAAGTGCTTTTGCAAGTGCTCGACTTGCCCTGCCGGGGCCAGAGGAGAAGAGTATTGTAAGTTCAAATACTGCAGCTGTAGCTGAGAAGAATCCTGCTGGAGCTGGCAATATAATGTCACTACCTCCACCTGAAAACTACTCGCTTCAGAAAGTAGGTTCTTATAGAAGTGAACCAATCATAGAAGAACCAGCGACACCAGAGCAAGAATTCACTAATCTATCACAAAGTGACATTGAAGACTTGTTCAATGAGGAATATGAGGAGGATCCTGATGAGATTCCTACCATCAATGTCAGCATGGAACAGTTCACAGACACATTACAAAACTATATGCAAAAGAACATGGATCTCCAAGAAGGTGACATGTCCAAGGCTTTAGTTGCCTTGAATCCAGAAGCTGCTTCTCTGCCTATTCCCAAGCTCAAGAATGTCAGTCGACTACGAACAGAGCACCAAGTGTATGAACTACCAGATTCACATCCACTTTTGGAAGGGATGGACAGACGGGAACCAGATGATCCAAGCCCATACCTTCTTGCAATATGGACGCCAGGTGAAACTGCAAATTCATTTCAACCACCAGAAAGCAGGTGTGGCTCCCAAGACGGAACCAGATTGTGCAATGAGAAGACATGCTTTTCATGCAACAGTATAAGAGAAGAAAAGTCGCAGATAGTCAGAGGGACAATTTTGATTCCTTGTAGAACAGCAATGAGAGGGAGCTTTCCACTCAATGGCACATACTTTCAGGTTAATGAGATGTTTGCAGATCATGCTTCTAGTGTCAACCCAATTGATGTTCCAAGGGGATGGATATGGGATTTACCAAGACGACCTGTGTACTTTGGAACTTCTGTAACATCAATATTCAAAGGTCTATCAACAGAGGGGATCCAGTACTGCTTTTGGAGAGGATATGTTTGTGTAAGGGGCTTTGACAGAAGTACAAGAGCGCCAAAACCCTTAATCACAAGATTGCACTTTCCTCAAAGCAAGATGACGAAGGCCAAAAATGAAGAGTGA

Protein Analysis

1927

Amino Acids

215.95

Weight (kDa)

6.76

Isoelectric Point (pI)

51.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Perm-CXXC PF15629 1781 - 1812 8.8e-13 Permuted single zf-CXXC unit
RRM_DME PF15628 1815 - 1915 1.6e-51 RRM in Demeter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 4253
AarI CACCTGC 4 cut(s) 904, 1753, 4171, 5340
Acc36I ACCTGC 5 cut(s) 904, 1753, 3763, 4171, 5340
Acc65I GGTACC 1 cut(s) 64
AccB1I GGYRCC 3 cut(s) 64, 1712, 3288
AccB7I CCANNNNNTGG 2 cut(s) 1441, 5495
AccBSI CCGCTC 1 cut(s) 3284
AccI GTMKAC 3 cut(s) 932, 2778, 5197
AccII CGCG 2 cut(s) 576, 578
AciI CCGC 7 cut(s) 444, 560, 578, 1586, 2456, 2936, 3282
AcoI YGGCCR 6 cut(s) 441, 483, 1624, 1861, 4188, 4622
AcsI RAATTY 9 cut(s) 2056, 2188, 3182, 3562, 3807, 3901, 4323, 4967, 5326
AcuI CTGAAG 6 cut(s) 359, 1653, 2733, 3066, 3664, 4889
AcyI GRCGYC 2 cut(s) 3289, 5309
AdeI CACNNNGTG 2 cut(s) 4988, 5218
AflIII ACRYGT 2 cut(s) 2246, 5124
AgeI ACCGGT 1 cut(s) 67
AjiI CACGTC 1 cut(s) 930
AjnI CCWGG 7 cut(s) 301, 1626, 1839, 3131, 3401, 3940, 5311
AjuI GAANNNNNNNTTGG 2 cut(s) 161, 193
AleI CACNNNNGTG 2 cut(s) 1834, 3795
AloI GAACNNNNNNTCC 4 cut(s) 338, 370, 2455, 2487
Alw21I GWGCWC 4 cut(s) 3746, 3781, 4780, 5214
Alw26I GTCTC 9 cut(s) 960, 1432, 1539, 1838, 2266, 3085, 3111, 3119, 3259
AlwNI CAGNNNCTG 5 cut(s) 995, 1441, 3704, 4186, 5159
ApoI RAATTY 9 cut(s) 2056, 2188, 3182, 3562, 3807, 3901, 4323, 4967, 5326
ArsI GACNNNNNNTTYG 2 cut(s) 3799, 3831
AsiGI ACCGGT 1 cut(s) 67
Asp700I GAANNNNTTC 5 cut(s) 499, 719, 2102, 3936, 4458
Asp718I GGTACC 1 cut(s) 64
AspLEI GCGC 4 cut(s) 576, 578, 3291, 5716
AspS9I GGNCC 6 cut(s) 48, 831, 2717, 3275, 4537, 4796
AsuC2I CCSGG 2 cut(s) 4493, 4794
AsuNHI GCTAGC 1 cut(s) 4312
AvaII GGWCC 4 cut(s) 48, 2717, 3275, 4537
AxyI CCTNAGG 1 cut(s) 1179
BaeGI GKGCMC 1 cut(s) 4395
BaeI ACNNNNGTAYC 6 cut(s) 2098, 2131, 3539, 3572, 4491, 4524
BalI TGGCCA 4 cut(s) 485, 1626, 1863, 4624
BamHI GGATCC 5 cut(s) 1763, 3398, 3766, 5026, 5652
BanI GGYRCC 3 cut(s) 64, 1712, 3288
BanII GRGCYC 2 cut(s) 206, 3746
BbsI GAAGAC 4 cut(s) 1694, 2424, 5004, 5396
Bbv12I GWGCWC 4 cut(s) 3746, 3781, 4780, 5214
BceAI ACGGC 4 cut(s) 1637, 1933, 2161, 2651
BcgI CGANNNNNNTGC 4 cut(s) 4212, 4246, 4738, 4772
BciT130I CCWGG 7 cut(s) 303, 1628, 1841, 3133, 3403, 3942, 5313
BciVI GTATCC 1 cut(s) 2362
BclI TGATCA 3 cut(s) 564, 2419, 4642
BcnI CCSGG 2 cut(s) 4493, 4794
BcoDI GTCTC 9 cut(s) 960, 1432, 1539, 1838, 2266, 3085, 3111, 3119, 3259
BfoI RGCGCY 2 cut(s) 3292, 5717
BfuAI ACCTGC 5 cut(s) 904, 1753, 3763, 4171, 5340
BfuI GTATCC 1 cut(s) 2362
BlpI GCTNAGC 2 cut(s) 1395, 4317
BmcAI AGTACT 2 cut(s) 3733, 5660
Bme1390I CCNGG 9 cut(s) 303, 1628, 1841, 3133, 3403, 3942, 4493, 4794, 5313
Bme18I GGWCC 4 cut(s) 48, 2717, 3275, 4537
BmgBI CACGTC 1 cut(s) 930
BmgT120I GGNCC 6 cut(s) 48, 831, 2717, 3275, 4537, 4796
BmrFI CCNGG 9 cut(s) 303, 1628, 1841, 3133, 3403, 3942, 4493, 4794, 5313
BmrI ACTGGG 2 cut(s) 3071, 4171
BmsI GCATC 8 cut(s) 481, 1999, 2163, 2526, 3019, 4210, 4374, 4584
BmtI GCTAGC 1 cut(s) 4316
BmuI ACTGGG 2 cut(s) 3071, 4171
BpiI GAAGAC 4 cut(s) 1694, 2424, 5004, 5396
BplI GAGNNNNNCTC 2 cut(s) 2639, 2671
BpmI CTGGAG 5 cut(s) 3087, 3588, 4550, 4619, 4878
Bpu1102I GCTNAGC 2 cut(s) 1395, 4317
BpuEI CTTGAG 9 cut(s) 322, 462, 649, 2193, 3180, 3207, 3732, 3778, 5168
BpuMI CCSGG 2 cut(s) 4493, 4794
Bsa29I ATCGAT 3 cut(s) 1924, 2500, 4368
BsaBI GATNNNNATC 3 cut(s) 1863, 3241, 5238
BsaHI GRCGYC 2 cut(s) 3289, 5309
BsaI GGTCTC 1 cut(s) 3259
BsaJI CCNNGG 9 cut(s) 59, 124, 2633, 2767, 3642, 4357, 4793, 5130, 5564
BsaWI WCCGGW 2 cut(s) 28, 67
BsaXI ACNNNNNCTCC 6 cut(s) 746, 776, 3239, 3269, 4554, 4584
Bse118I RCCGGY 1 cut(s) 67
Bse1I ACTGG 8 cut(s) 226, 1251, 1446, 2118, 2994, 3077, 4166, 5656
Bse21I CCTNAGG 1 cut(s) 1179
Bse3DI GCAATG 5 cut(s) 2787, 3838, 4230, 5389, 5478
Bse8I GATNNNNATC 3 cut(s) 1863, 3241, 5238
BseBI CCWGG 7 cut(s) 303, 1628, 1841, 3133, 3403, 3942, 5313
BseCI ATCGAT 3 cut(s) 1924, 2500, 4368
BseDI CCNNGG 9 cut(s) 59, 124, 2633, 2767, 3642, 4357, 4793, 5130, 5564
BseJI GATNNNNATC 3 cut(s) 1863, 3241, 5238
BseMI GCAATG 5 cut(s) 2787, 3838, 4230, 5389, 5478
BseMII CTCAG 9 cut(s) 2139, 2330, 2504, 2670, 2868, 3228, 3796, 4308, 4833
BseNI ACTGG 8 cut(s) 226, 1251, 1446, 2118, 2994, 3077, 4166, 5656
BsePI GCGCGC 1 cut(s) 574
BseRI GAGGAG 6 cut(s) 754, 1557, 1985, 3202, 4817, 5036
BseSI GKGCMC 1 cut(s) 4395
BseYI CCCAGC 4 cut(s) 205, 803, 1077, 3827
BsgI GTGCAG 4 cut(s) 1864, 2607, 4684, 4768
Bsh1236I CGCG 2 cut(s) 576, 578
Bsh1285I CGRYCG 1 cut(s) 740
BshNI GGYRCC 3 cut(s) 64, 1712, 3288
BshTI ACCGGT 1 cut(s) 67
BshVI ATCGAT 3 cut(s) 1924, 2500, 4368
BsiEI CGRYCG 1 cut(s) 740
BsiHKAI GWGCWC 4 cut(s) 3746, 3781, 4780, 5214
BsiSI CCGG 5 cut(s) 29, 68, 4011, 4493, 4793
BslFI GGGAC 6 cut(s) 1171, 2828, 2992, 3956, 4523, 5458
BsmAI GTCTC 9 cut(s) 960, 1432, 1539, 1838, 2266, 3085, 3111, 3119, 3259
BsmFI GGGAC 6 cut(s) 1171, 2828, 2992, 3956, 4523, 5458
BsmI GAATGC 5 cut(s) 619, 1174, 3012, 3628, 4156
Bso31I GGTCTC 1 cut(s) 3259
Bsp1286I GDGCHC 6 cut(s) 206, 3746, 3781, 4395, 4780, 5214
Bsp1407I TGTACA 1 cut(s) 172
Bsp1720I GCTNAGC 2 cut(s) 1395, 4317
Bsp19I CCATGG 2 cut(s) 124, 4357
BspACI CCGC 7 cut(s) 444, 560, 578, 1586, 2456, 2936, 3282
BspCNI CTCAG 9 cut(s) 2140, 2329, 2505, 2669, 2867, 3227, 3795, 4309, 4834
BspDI ATCGAT 3 cut(s) 1924, 2500, 4368
BspFNI CGCG 2 cut(s) 576, 578
BspMAI CTGCAG 6 cut(s) 279, 394, 412, 1525, 3235, 4834
BspMI ACCTGC 5 cut(s) 904, 1753, 3763, 4171, 5340
BspOI GCTAGC 1 cut(s) 4316
BspT107I GGYRCC 3 cut(s) 64, 1712, 3288
BspTNI GGTCTC 1 cut(s) 3259
BsrBI CCGCTC 1 cut(s) 3284
BsrDI GCAATG 5 cut(s) 2787, 3838, 4230, 5389, 5478
BsrFI RCCGGY 1 cut(s) 67
BsrGI TGTACA 1 cut(s) 172
BsrI ACTGG 8 cut(s) 226, 1251, 1446, 2118, 2994, 3077, 4166, 5656
BssAI RCCGGY 1 cut(s) 67
BssECI CCNNGG 9 cut(s) 59, 124, 2633, 2767, 3642, 4357, 4793, 5130, 5564
BssHII GCGCGC 1 cut(s) 574
BssNI GRCGYC 2 cut(s) 3289, 5309
BssT1I CCWWGG 7 cut(s) 59, 124, 2767, 3642, 4357, 5130, 5564
Bst2UI CCWGG 7 cut(s) 303, 1628, 1841, 3133, 3403, 3942, 5313
Bst6I CTCTTC 4 cut(s) 93, 1978, 4802, 5772
BstACI GRCGYC 2 cut(s) 3289, 5309
BstAPI GCANNNNNTGC 5 cut(s) 1169, 2009, 2173, 2308, 5534
BstAUI TGTACA 1 cut(s) 172
BstDSI CCRYGG 3 cut(s) 124, 2633, 4357
BstFNI CGCG 2 cut(s) 576, 578
BstH2I RGCGCY 2 cut(s) 3292, 5717
BstHHI GCGC 4 cut(s) 576, 578, 3291, 5716
BstMAI GTCTC 9 cut(s) 960, 1432, 1539, 1838, 2266, 3085, 3111, 3119, 3259
BstMCI CGRYCG 1 cut(s) 740
BstNI CCWGG 7 cut(s) 303, 1628, 1841, 3133, 3403, 3942, 5313
BstSCI CCNGG 9 cut(s) 301, 1626, 1839, 3131, 3401, 3940, 4491, 4792, 5311
BstSLI GKGCMC 1 cut(s) 4395
BstUI CGCG 2 cut(s) 576, 578
BstV2I GAAGAC 4 cut(s) 1694, 2424, 5004, 5396
BstX2I RGATCY 6 cut(s) 1763, 3398, 3766, 5026, 5107, 5652
BstXI CCANNNNNNTGG 4 cut(s) 841, 1283, 2362, 5571
BstYI RGATCY 6 cut(s) 1763, 3398, 3766, 5026, 5107, 5652
Bsu15I ATCGAT 3 cut(s) 1924, 2500, 4368
Bsu36I CCTNAGG 1 cut(s) 1179
BsuI GTATCC 1 cut(s) 2362
BsuTUI ATCGAT 3 cut(s) 1924, 2500, 4368
BtgI CCRYGG 3 cut(s) 124, 2633, 4357
BtrI CACGTC 1 cut(s) 930
BtsI GCAGTG 2 cut(s) 334, 1530
BveI ACCTGC 5 cut(s) 904, 1753, 3763, 4171, 5340
CaiI CAGNNNCTG 5 cut(s) 995, 1441, 3704, 4186, 5159
CfoI GCGC 4 cut(s) 576, 578, 3291, 5716
Cfr10I RCCGGY 1 cut(s) 67
Cfr13I GGNCC 6 cut(s) 48, 831, 2717, 3275, 4537, 4796
ClaI ATCGAT 3 cut(s) 1924, 2500, 4368
CseI GACGC 1 cut(s) 5317
CspAI ACCGGT 1 cut(s) 67
DinI GGCGCC 1 cut(s) 3290
DraI TTTAAA 1 cut(s) 1954
DraIII CACNNNGTG 2 cut(s) 4988, 5218
EaeI YGGCCR 6 cut(s) 441, 483, 1624, 1861, 4188, 4622
Eam1104I CTCTTC 4 cut(s) 93, 1978, 4802, 5772
EarI CTCTTC 4 cut(s) 93, 1978, 4802, 5772
Ecl136II GAGCTC 1 cut(s) 3744
Eco130I CCWWGG 7 cut(s) 59, 124, 2767, 3642, 4357, 5130, 5564
Eco24I GRGCYC 2 cut(s) 206, 3746
Eco31I GGTCTC 1 cut(s) 3259
Eco32I GATATC 1 cut(s) 3343
Eco47I GGWCC 4 cut(s) 48, 2717, 3275, 4537
Eco53kI GAGCTC 1 cut(s) 3744
Eco57I CTGAAG 6 cut(s) 359, 1653, 2733, 3066, 3664, 4889
Eco81I CCTNAGG 1 cut(s) 1179
EcoICRI GAGCTC 1 cut(s) 3744
EcoO109I RGGNCCY 3 cut(s) 2717, 3275, 4537
EcoRI GAATTC 4 cut(s) 2056, 2188, 4323, 4967
EcoRII CCWGG 7 cut(s) 301, 1626, 1839, 3131, 3401, 3940, 5311
EcoRV GATATC 1 cut(s) 3343
EcoT14I CCWWGG 7 cut(s) 59, 124, 2767, 3642, 4357, 5130, 5564
EcoT22I ATGCAT 1 cut(s) 3014
EcoT38I GRGCYC 2 cut(s) 206, 3746
EgeI GGCGCC 1 cut(s) 3290
EheI GGCGCC 1 cut(s) 3290
ErhI CCWWGG 7 cut(s) 59, 124, 2767, 3642, 4357, 5130, 5564
FalI AAGNNNNNCTT 6 cut(s) 2634, 2666, 3601, 3633, 5381, 5413
FaqI GGGAC 6 cut(s) 1171, 2828, 2992, 3956, 4523, 5458
FauNDI CATATG 1 cut(s) 3772
FbaI TGATCA 3 cut(s) 564, 2419, 4642
FblI GTMKAC 3 cut(s) 932, 2778, 5197
FriOI GRGCYC 2 cut(s) 206, 3746
GlaI GCGC 4 cut(s) 575, 577, 3290, 5715
GsaI CCCAGC 4 cut(s) 209, 807, 1081, 3831
GsuI CTGGAG 5 cut(s) 3087, 3588, 4550, 4619, 4878
HaeII RGCGCY 2 cut(s) 3292, 5717
HapII CCGG 5 cut(s) 29, 68, 4011, 4493, 4793
HgaI GACGC 1 cut(s) 5317
HhaI GCGC 4 cut(s) 576, 578, 3291, 5716
Hin1I GRCGYC 2 cut(s) 3289, 5309
Hin6I GCGC 4 cut(s) 574, 576, 3289, 5714
HinP1I GCGC 4 cut(s) 574, 576, 3289, 5714
HincII GTYRAC 9 cut(s) 436, 1244, 1918, 2779, 2851, 3062, 4159, 5198, 5548
HindII GTYRAC 9 cut(s) 436, 1244, 1918, 2779, 2851, 3062, 4159, 5198, 5548
HpaII CCGG 5 cut(s) 29, 68, 4011, 4493, 4793
Hpy99I CGWCG 1 cut(s) 2292
HpyCH4IV ACGT 5 cut(s) 399, 929, 1209, 2626, 2821
HpySE526I ACGT 5 cut(s) 399, 929, 1209, 2626, 2821
Hsp92I GRCGYC 2 cut(s) 3289, 5309
HspAI GCGC 4 cut(s) 574, 576, 3289, 5714
KasI GGCGCC 1 cut(s) 3288
KflI GGGWCCC 1 cut(s) 4537
KpnI GGTACC 1 cut(s) 68
Ksp22I TGATCA 3 cut(s) 564, 2419, 4642
LweI GCATC 8 cut(s) 481, 1999, 2163, 2526, 3019, 4210, 4374, 4584
MaeII ACGT 5 cut(s) 399, 929, 1209, 2626, 2821
MbiI CCGCTC 1 cut(s) 3284
MfeI CAATTG 4 cut(s) 176, 219, 3522, 5553
MflI RGATCY 6 cut(s) 1763, 3398, 3766, 5026, 5107, 5652
MhlI GDGCHC 6 cut(s) 206, 3746, 3781, 4395, 4780, 5214
MlsI TGGCCA 4 cut(s) 485, 1626, 1863, 4624
MluNI TGGCCA 4 cut(s) 485, 1626, 1863, 4624
Mly113I GGCGCC 1 cut(s) 3289
MmeI TCCRAC 3 cut(s) 323, 4489, 4570
Mox20I TGGCCA 4 cut(s) 485, 1626, 1863, 4624
Mph1103I ATGCAT 1 cut(s) 3014
MroXI GAANNNNTTC 5 cut(s) 499, 719, 2102, 3936, 4458
MscI TGGCCA 4 cut(s) 485, 1626, 1863, 4624
MslI CAYNNNNRTG 5 cut(s) 624, 1044, 1834, 3795, 3867
Msp20I TGGCCA 4 cut(s) 485, 1626, 1863, 4624
MspA1I CMGCKG 3 cut(s) 389, 3988, 4835
MspI CCGG 5 cut(s) 29, 68, 4011, 4493, 4793
MspR9I CCNGG 9 cut(s) 303, 1628, 1841, 3133, 3403, 3942, 4493, 4794, 5313
MunI CAATTG 4 cut(s) 176, 219, 3522, 5553
Mva1269I GAATGC 5 cut(s) 619, 1174, 3012, 3628, 4156
MvaI CCWGG 7 cut(s) 303, 1628, 1841, 3133, 3403, 3942, 5313
MvnI CGCG 2 cut(s) 576, 578
NarI GGCGCC 1 cut(s) 3289
NciI CCSGG 2 cut(s) 4493, 4794
NcoI CCATGG 2 cut(s) 124, 4357
NdeI CATATG 1 cut(s) 3772
NheI GCTAGC 1 cut(s) 4312
NmeAIII GCCGAG 1 cut(s) 3265
NsiI ATGCAT 1 cut(s) 3014
OliI CACNNNNGTG 2 cut(s) 1834, 3795
PaeI GCATGC 3 cut(s) 1586, 2800, 3964
PaqCI CACCTGC 4 cut(s) 904, 1753, 4171, 5340
PauI GCGCGC 1 cut(s) 574
PciI ACATGT 2 cut(s) 2246, 5124
PctI GAATGC 5 cut(s) 619, 1174, 3012, 3628, 4156
PdmI GAANNNNTTC 5 cut(s) 499, 719, 2102, 3936, 4458
PflMI CCANNNNNTGG 2 cut(s) 1441, 5495
PfoI TCCNGGA 2 cut(s) 3131, 3940
PinAI ACCGGT 1 cut(s) 67
PluTI GGCGCC 1 cut(s) 3292
PpuMI RGGWCCY 3 cut(s) 2717, 3275, 4537
PscI ACATGT 2 cut(s) 2246, 5124
PsiI TTATAA 1 cut(s) 4253
Psp124BI GAGCTC 1 cut(s) 3746
Psp5II RGGWCCY 3 cut(s) 2717, 3275, 4537
Psp6I CCWGG 7 cut(s) 301, 1626, 1839, 3131, 3401, 3940, 5311
PspFI CCCAGC 4 cut(s) 205, 803, 1077, 3827
PspGI CCWGG 7 cut(s) 301, 1626, 1839, 3131, 3401, 3940, 5311
PspPI GGNCC 6 cut(s) 48, 831, 2717, 3275, 4537, 4796
PspPPI RGGWCCY 3 cut(s) 2717, 3275, 4537
PsrI GAACNNNNNNTAC 2 cut(s) 4804, 4836
PstI CTGCAG 6 cut(s) 279, 394, 412, 1525, 3235, 4834
PstNI CAGNNNCTG 5 cut(s) 995, 1441, 3704, 4186, 5159
PsuI RGATCY 6 cut(s) 1763, 3398, 3766, 5026, 5107, 5652
PteI GCGCGC 1 cut(s) 574
PvuII CAGCTG 3 cut(s) 389, 3988, 4835
RseI CAYNNNNRTG 5 cut(s) 624, 1044, 1834, 3795, 3867
SacI GAGCTC 1 cut(s) 3746
SalI GTCGAC 2 cut(s) 2777, 5196
Sau96I GGNCC 6 cut(s) 48, 831, 2717, 3275, 4537, 4796
ScaI AGTACT 2 cut(s) 3733, 5660
ScrFI CCNGG 9 cut(s) 303, 1628, 1841, 3133, 3403, 3942, 4493, 4794, 5313
SduI GDGCHC 6 cut(s) 206, 3746, 3781, 4395, 4780, 5214
SfaNI GCATC 8 cut(s) 481, 1999, 2163, 2526, 3019, 4210, 4374, 4584
SfoI GGCGCC 1 cut(s) 3290
SinI GGWCC 4 cut(s) 48, 2717, 3275, 4537
SmiMI CAYNNNNRTG 5 cut(s) 624, 1044, 1834, 3795, 3867
SmlI CTYRAG 9 cut(s) 337, 477, 664, 2208, 3195, 3222, 3747, 3793, 5183
SmoI CTYRAG 9 cut(s) 337, 477, 664, 2208, 3195, 3222, 3747, 3793, 5183
SphI GCATGC 3 cut(s) 1586, 2800, 3964
SsiI CCGC 7 cut(s) 444, 560, 578, 1586, 2456, 2936, 3282
SspDI GGCGCC 1 cut(s) 3288
SspI AATATT 6 cut(s) 1778, 1789, 2052, 3839, 4108, 5628
SstI GAGCTC 1 cut(s) 3746
StyD4I CCNGG 9 cut(s) 301, 1626, 1839, 3131, 3401, 3940, 4491, 4792, 5311
StyI CCWWGG 7 cut(s) 59, 124, 2767, 3642, 4357, 5130, 5564
TaiI ACGT 5 cut(s) 402, 932, 1212, 2629, 2824
TaqII GACCGA 2 cut(s) 36, 754
TatI WGTACW 7 cut(s) 172, 2381, 3370, 3731, 5601, 5658, 5705
TauI GCSGC 1 cut(s) 446
TspGWI ACGGA 1 cut(s) 5382
Van91I CCANNNNNTGG 2 cut(s) 1441, 5495
VpaK11BI GGWCC 4 cut(s) 48, 2717, 3275, 4537
XapI RAATTY 9 cut(s) 2056, 2188, 3182, 3562, 3807, 3901, 4323, 4967, 5326
XbaI TCTAGA 1 cut(s) 1315
XcmI CCANNNNNNNNNTGG 2 cut(s) 147, 2236
XmiI GTMKAC 3 cut(s) 932, 2778, 5197
XmnI GAANNNNTTC 5 cut(s) 499, 719, 2102, 3936, 4458
ZrmI AGTACT 2 cut(s) 3733, 5660
Zsp2I ATGCAT 1 cut(s) 3014
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.