Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0002428

Physical Location & Seq

Genomic Coordinates Forward (+)

23948431 .. 23958680

Gene Structure 10250 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG153500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 5226 bp

ATGAAGTTTGGAGGGGATTTTTCAGTTCCGGTGGATGAGGATTTTCGGTCCATGCCTCCTTGGGTACCGGTAACGCCCCAGAAGCCTCTTCCATTGAAACCTCACCCTACGCTGCTTAACCCCCACGGGAATCACCTACCAGCAGCAAATTGGCAACACGAATTGGGGAATGTACAATTGGGTGATACTTACAATGGCATGAGCCCAGCTATCAACCCAATTGTCCAGTTTCCTAGAAATGTTGGGTGTTATGGTGTTGATGGAGGTCTGGCTCCGCAGAATGGAATGACAAATCACATTCCAGGTTCATACTCACAGTTGCTTGGCAGTGACAGCTCAAGTTGGAACAATGAATCCTTCACACAACTACTACTTCAGGATAATGCAGCTGCAGTTTACGTTGCCTCTGCAGACAGGAATCTTAGCAGAAGTGTTGACATGGCAGCAAATGCACCTCTAACTCCGAAGTTGCATCCTCAAGTGGCCAACCAAAGAAACAATTCAAGTAGTTTCTTGCTGACCAACCAAAATTGCAACAATGGTTCATACCCTTCGAGTGCGGTGATGAGCAGGCGCGCGGTTTTGGATTTCCCTTCTCTGTTTGATAACAGTCCGGGGCATTCCAATGTAGCTAATTGGTTGCTTAACAACGAAAATCACAGCTCAAGTTCAAACTTGTTGAGTAATGGTCACAGCTCACCCCATATAAGCCAGAATGTTTTCCCCATGCCCTTGCGACCGAGCTATGATCTAAACTTAAACTCCTCACCGAGAACAGAAGCCGATACTACTTCATGTGTTCCCAGCCAACTCCAATTCACACCATATAGGGCCAATCGTATGGAGAACAACCGTCTTTCGGCAATACAAACATCCTTGACAGATGAAAGCTCTAGCAAGGAAAACGACAAGCAGGTGGACTTTTTCACATCTACAGGAGATGTAGCAATTCAGAAACATGGTGGAGAACTCTTGCAGAATATCGTGGAGTCTGCTTCTGCAACAATTTCTACACCATACAAGGAAAATAAAGATTCTGACCATGAAAGTGACAGAGGGATTGATCTAAACCAGACAGCCCAGCACAAAACACCCAAGAGAAGGAAGCACAGGCCAAAAGTAATCATAGAAGGCAAACCCAAAAGGACTCCAAAGCCTGCAACTGCAAAGAATGCAGAGCCTAAGGAGTCTCGAACAGGAAAGAGGAAATACGTTAGAAAGAATGTCCAAAAGGAATCGTCAAGTCAACTGGTGGATGGTACGAGTGAAGCAACATACCATAATGCTGGAATAGCTGCAAAATCATGCAGGAGAGTTCTAGACTTTGATTTGGAAATGACCACAGTTGAAAAGCAGGGCAAAGCTGCTAGAAATAATCAGTCTAAAATGAAGTCTGCTAAGCTGATTGACCTAGAAAATGAAGTGATGGTAGAAAACCAGAGACTGGAATCTATGAGTCACCCTAGCCCTTCAATGAGTCATTTACCAAGTAACTATATAATTCTTCCAGAAGGACAAGAATCTGCAGTGCCTCATGCTACAAGAGGAGACACACAGATAAACAATTTGCATGTCACAAAAAGGCATGCAGATAGTCGATATGAATACGCTCCCATGCTGCAACATGGCCAGGCTGAAGGAGTGGGCAAACATGCCGTGCGAGCAAAGACTAATGGTGAAAACCATGAGAAGACTAAAGAAAGTGTTAATCAGGGTGCCTATCAATCAGCACTAAAAGCTCTGTCACCTGCTAGTGAAGGAAGGGGATCCAAGAGGGAATATTGTCATAATATTCAGCAGACACATCTTTGTTCCAATAATCTGTATAGTTCACTGTTGTGCCAGGAGACATTTGAATTGGATGGCCATCAGGAAAGTAGTTGCACTATCACCAAAGCAAGCCATAAAAAGCAGAAAGTTGACAATCAATACTTGTCCATCCACGACATGCCGTTTAAAGTTACAGCAGTTGAGGAGGGTCTTGGAAGAGTTGAAAGAAAAAGGGCAAATGATGCCAACTCCAATGGATTTGCAGCAGCACTAAACCATACAATATTGAATTCTTACATTGGAAGTAACAGAATGAAAGAGAGAGAAAAGAATGGGTTCAACAAGTGTACCAGTGACAGGTTCATTGATTCTATAGCTTCTGAGCATGATTCGCCAAAGCAGCAGATGCCATTCAAATCGAATTCTTGCAAAGAAATCACTCAAGTTCTTAGCTTCTCTACCAATTCCACAATGGAAACATGTAAGCAGCTTGTCTCATCATCTCCCAGAAAATCCTCTCGACGAGGTAAGAGGCAGGAATTGCAAACTCAGAAACCAAAGTCAGCAACGAAGCAGGCTGTGGTATCCACTGTATTGGAATCTGCTTTACCAAGTACAGATAAAATGCTGCAAGAACAGGATTTCTTGTATGATCATCAACAGTCTTCTGCAAAAACATTAGGGCTTCCGCTAAGAACAATATATCCTTCAATTATGGATGACATCATACATCGATTTAGTGTTCTGAGCATCAATGGGAGCTGCAATCAATTTCAGGAGCAAGAGCAAAATGCACTTGTTCCATACAAAGGAGATGGTGCAGTTGTTCCCTATGAAGGGTCTGAATATATTAAGAAACGTAAGCCACGGCCTAAAGTGGAGCTTGACTCAGAAACAAATAGGATTTGGAACCTTCTGATGGGGAAGGAAGGAATTGAAGGCACTGAAGGACCTGACAAGCAAAAGGAGAAGTATTGGGGAGAGGAAAGAAAGGTTTTCCAAGGTCGAGTCGACTCATTCATTGCACGCATGCACCTTGTTCAAGGGGACAGACGTTTTTCACGGTGGAAAGGATCAGTTGTTGACTCAGTGATTGGAGTTTTCCTTACTCAAAATGTTTCAGACCATCTATCAAGCTCTGCCTTCATGTCTTTGGCAGCAAGATTTCCGCTAAAGTCAATGAGCAATCACCAAACACAAGACAAGGTTGGGACAGACATACTGGTTAAAGAACCAGAAGTATGCATTCCAATCCCAGATGATGCTACCAAATGGCCTGAAGAAAGAACAAGTCAACCAATCTATAACCCAGTCTCTATGACACCCTATGAATCTCCAGAACATCAGAGAGACAGTGAGACTTCCAGGACAGGAAAGAACTTAATGGAGGCACATATTCAATGTTTGGAGGAAGAATTTGTATCATCTCAAGATTCTTTTGGCTCCTCGGTCACTCAAGGAACTGCAGGATTTAGATCATACTTGGTCTCCAATTCAGAAGCAGAAGGTCCTACCGCTCGGCGCCAACCCAACAAGGTTAGCTCTAATTCAGCTTACCCACCGATGGAGAAAGATATCGTATTTCAAGACTTTTACCATGAAGTACAAGGAAGTCCACTATTAGATGATGGATCCAGGCAGAGGCTTAAACAATGGGGGGAGCTAAAGACGAGATCAGACAGAATAGATGATTTCAGTGGCACTTGTTCAGTCACAAATCCAATCAATCTTGACAACCGAAAAATGCGACCATCAATTGCTCCTTCCAGCAGCAATCATTTACAGATGTACCTAAATTCTGGAGAACCAGAGCCATTTGGATTGGAAAGTTTCAGTGAAGAAAGCATATCTTCTTGTTGGCATTCAACTGCTTCCAAGGTCAATGTGCAAAAAGATGACTATTACAAGAGCTTCAGATATAAGGAATTGTCAGGAACTGTTGTTAGTTCATCTGTCGAACAAAGTACTTTGTGGAGCTCTCAAGAACCTGCCACAAAGGATCCATATGGTGCTCTCAGACAGCACTCAAGTGACCAGCAAAATTATTGTCAGCCAAGACCCAGCAATGAATATTATCAACCTTCCAGCGAAAGTCATCAACATGAGGGGAACCAGACCTTCCAATTAGAGAAAAATTCATTCATAGAGCCTGTAAAACATAGTGAACAACTTCCAGGAAAGAAGAATGATGGCATGCAGCAAGTCCCAAATGTCAATCAGCTGAATAAGAAATCTTCAAATGCCGGAGATAGTATCTCTACAGTGAACAATGGATCGGTTAATTCAAATACAAAGGAGCAATCTTCCCATGAACGGTCACAGAATGAGATTGTTACTAATATTTCAAGAGGAAGGAAGAAAAAGTCAGAAAGTGACAAAAAGAATGCAGTTGACTGGGATAATTTAAGAACGCAGGTGCTGGCCGATGGTAGGAAAAAGGAAAGAAACAAAGATGCAATGGACTCGCTTGACTATGAAGCACTTATAAATGCTAATGTTAAAGAGATTTCTAATGCAATCAGGGAGCGAGGGATGAACAACATGCTAGCTGAGCGAATTCAGGACTTCCTAAATCGAGTGGTTAAAGACCATGGAAGCATCGATTTGGAATGGTTGAGAGATGTGCCCCCTGATAAAGCAAAGGATTATCTATTAAGTATTCGAGGTTTGGGCTTGAAAAGTGTGGAATGTGTTCGTCTTTTGACACTTCACCATCTTGCTTTCCCGGTTGATACAAATGTTGGAAGAATAGCAGTACGACTTGGATGGGTCCCCCTCCAACCATTACCTGAATCACTCCAGCTCCATCTCCTAGAACTGTACCCGATGCTGGAGTCAATTCAAAAGTATCTCTGGCCAAGATTATGCAAACTTGATCAATTAACCCTGTATGAGTTACACTACCAGATGATTACATTTGGAAAGGTTTTCTGCACAAAAAGTAAACCAAATTGCAACGCATGTCCAATGAGAGGCGAGTGCAGACACTTCGCAAGTGCTTTTGCAAGTGCTCGACTTGCCCTGCCGGGGCCAGAGGAGAAGAGTATTGTAAGTTCAAATACTGCAGCTGTAGCTGAGAAGAATCCTGCTGGAGCTGGCAATATAATGTCACTACCTCCACCTGAAAACTACTCGCTTCAGAAAGTAGGTTCTTATAGAAGTGAACCAATCATAGAAGAACCAGCGACACCAGAGCAAGAATTCACTAATCTATCACAAAGTGACATTGAAGACTTGTTCAATGAGGAATATGAGGAGGATCCTGATGAGATTCCTACCATCAATGTCAGCATGGAACAGTTCACAGACACATTACAAAACTATATGCAAAAGAACATGGATCTCCAAGAAGGTGACATGTCCAAGGCTTTAGTTGCCTTGAATCCAGAAGCTGCTTCTCTGCCTATTCCCAAGCTCAAGAATGTCAGTCGACTACGAACAGAGCACCAAGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0003906 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006349 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010468 GO:0016787 GO:0016798 GO:0016799 GO:0019104 GO:0019222 GO:0022414 GO:0032259 GO:0032501 GO:0032502 GO:0034641 GO:0040029 GO:0043076 GO:0043078 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0044728 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0060255 GO:0061458 GO:0065007 GO:0071514 GO:0071704 GO:0090304 GO:0140097 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Perm-CXXC RRM_DME

Protein Analysis

1741

Amino Acids

194.74

Weight (kDa)

6.68

Isoelectric Point (pI)

53.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002428)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04560 AT5G04560 AT5G04560
fragaria_vesca	FvH4_2g10170 FvH4_2g10170 FvH4_2g10170 FvH4_2g10170 FvH4_2g10170
malus_domestica	MD02G1245300.v1.1 MD07G1071800.v1.1 MD09G1259000.v1.1 MD09G1259100.v1.1 MD17G1253500.v1.1 MD17G1253600.v1.1
prunus_persica	Prupe.2G089400_v2.0.a1 Prupe.7G005000_v2.0.a1 Prupe.7G005000_v2.0.a1 Prupe.7G005000_v2.0.a1 Prupe.7G005000_v2.0.a1 Prupe.7G005000_v2.0.a1 Prupe.7G005000_v2.0.a1
pyrus_communis	pycom02g21110 pycom09g17380 pycom17g25620 pycom17g25630
rosa_chinensis	RchiOBHm_Chr6g0267351 RchiOBHm_Chr6g0267361
rosa_laevigata	RLG00000014013
rosa_multiflora	Rmu_sc0000746.1_g000002 Rmu_sc0019664.1_g000001
rosa_roxburghii	Rroxscaffold_7G00200830
rosa_rugosa	Rorug06G0031600 Rorug06G0031700 Rorug06G0031800 Rorug06G0031900 Rorug06G0032000
rosa_samantha	Rh6AG153500 Rh6BG153200 Rh6CG149300 Rh6DG137600
rosa_wichuraiana	Rw6G013200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	4256
AarI	CACCTGC	3 cut(s)	904, 1756, 4174
Acc36I	ACCTGC	4 cut(s)	904, 1756, 3766, 4174
Acc65I	GGTACC	1 cut(s)	64
AccB1I	GGYRCC	3 cut(s)	64, 1715, 3291
AccB7I	CCANNNNNTGG	1 cut(s)	1444
AccBSI	CCGCTC	1 cut(s)	3287
AccI	GTMKAC	2 cut(s)	2781, 5200
AccII	CGCG	2 cut(s)	576, 578
AciI	CCGC	6 cut(s)	275, 560, 578, 2459, 2939, 3285
AcoI	YGGCCR	5 cut(s)	483, 1627, 1864, 4191, 4625
AcsI	RAATTY	7 cut(s)	2059, 2191, 3185, 3565, 3904, 4326, 4970
AcuI	CTGAAG	6 cut(s)	359, 1656, 2736, 3069, 3667, 4892
AcyI	GRCGYC	1 cut(s)	3292
AdeI	CACNNNGTG	2 cut(s)	4991, 5221
AflIII	ACRYGT	2 cut(s)	2249, 5127
AgeI	ACCGGT	1 cut(s)	67
AjnI	CCWGG	6 cut(s)	301, 1629, 1842, 3134, 3404, 3943
AjuI	GAANNNNNNNTTGG	2 cut(s)	161, 193
AleI	CACNNNNGTG	2 cut(s)	1837, 3798
AloI	GAACNNNNNNTCC	4 cut(s)	338, 370, 2458, 2490
Alw21I	GWGCWC	4 cut(s)	3749, 3784, 4783, 5217
Alw26I	GTCTC	9 cut(s)	1194, 1435, 1542, 1841, 2269, 3088, 3114, 3122, 3262
AlwNI	CAGNNNCTG	4 cut(s)	1444, 3707, 4189, 5162
ApoI	RAATTY	7 cut(s)	2059, 2191, 3185, 3565, 3904, 4326, 4970
ArsI	GACNNNNNNTTYG	2 cut(s)	3802, 3834
AsiGI	ACCGGT	1 cut(s)	67
Asp700I	GAANNNNTTC	5 cut(s)	499, 719, 2105, 3939, 4461
Asp718I	GGTACC	1 cut(s)	64
AspLEI	GCGC	3 cut(s)	576, 578, 3294
AspS9I	GGNCC	6 cut(s)	48, 831, 2720, 3278, 4540, 4799
AsuC2I	CCSGG	3 cut(s)	615, 4496, 4797
AsuNHI	GCTAGC	1 cut(s)	4315
AvaII	GGWCC	4 cut(s)	48, 2720, 3278, 4540
AxyI	CCTNAGG	1 cut(s)	1182
BaeGI	GKGCMC	1 cut(s)	4398
BaeI	ACNNNNGTAYC	6 cut(s)	2101, 2134, 3542, 3575, 4494, 4527
BalI	TGGCCA	4 cut(s)	485, 1629, 1866, 4627
BamHI	GGATCC	4 cut(s)	1766, 3401, 3769, 5029
BanI	GGYRCC	3 cut(s)	64, 1715, 3291
BanII	GRGCYC	2 cut(s)	206, 3749
BbsI	GAAGAC	3 cut(s)	1697, 2427, 5007
Bbv12I	GWGCWC	4 cut(s)	3749, 3784, 4783, 5217
BceAI	ACGGC	3 cut(s)	1640, 1936, 2654
BcgI	CGANNNNNNTGC	4 cut(s)	4215, 4249, 4741, 4775
BciT130I	CCWGG	6 cut(s)	303, 1631, 1844, 3136, 3406, 3945
BciVI	GTATCC	1 cut(s)	2365
BclI	TGATCA	2 cut(s)	2422, 4645
BcnI	CCSGG	3 cut(s)	615, 4496, 4797
BcoDI	GTCTC	9 cut(s)	1194, 1435, 1542, 1841, 2269, 3088, 3114, 3122, 3262
BfaI	CTAG	9 cut(s)	234, 894, 1319, 1368, 1412, 1464, 1752, 4316, 4583
BfmI	CTRYAG	9 cut(s)	390, 408, 933, 1524, 2142, 3234, 4029, 4833, 4839
BfoI	RGCGCY	1 cut(s)	3295
BfuAI	ACCTGC	4 cut(s)	904, 1756, 3766, 4174
BfuI	GTATCC	1 cut(s)	2365
BlpI	GCTNAGC	2 cut(s)	1398, 4320
BmcAI	AGTACT	1 cut(s)	3736
Bme1390I	CCNGG	9 cut(s)	303, 615, 1631, 1844, 3136, 3406, 3945, 4496, 4797
Bme18I	GGWCC	4 cut(s)	48, 2720, 3278, 4540
BmgT120I	GGNCC	6 cut(s)	48, 831, 2720, 3278, 4540, 4799
BmrFI	CCNGG	9 cut(s)	303, 615, 1631, 1844, 3136, 3406, 3945, 4496, 4797
BmrI	ACTGGG	2 cut(s)	3074, 4174
BmsI	GCATC	8 cut(s)	481, 2002, 2166, 2529, 3022, 4213, 4377, 4587
BmtI	GCTAGC	1 cut(s)	4319
BmuI	ACTGGG	2 cut(s)	3074, 4174
BpiI	GAAGAC	3 cut(s)	1697, 2427, 5007
BplI	GAGNNNNNCTC	2 cut(s)	2642, 2674
BpmI	CTGGAG	5 cut(s)	3090, 3591, 4553, 4622, 4881
Bpu1102I	GCTNAGC	2 cut(s)	1398, 4320
BpuEI	CTTGAG	9 cut(s)	322, 462, 649, 2196, 3183, 3210, 3735, 3781, 5171
BpuMI	CCSGG	3 cut(s)	615, 4496, 4797
Bsa29I	ATCGAT	2 cut(s)	2503, 4371
BsaBI	GATNNNNATC	2 cut(s)	1866, 3244
BsaHI	GRCGYC	1 cut(s)	3292
BsaI	GGTCTC	1 cut(s)	3262
BsaWI	WCCGGW	2 cut(s)	28, 67
BsaXI	ACNNNNNCTCC	6 cut(s)	746, 776, 3242, 3272, 4557, 4587
Bse118I	RCCGGY	1 cut(s)	67
Bse1I	ACTGG	7 cut(s)	226, 1254, 1449, 2121, 2997, 3080, 4169
Bse21I	CCTNAGG	1 cut(s)	1182
Bse3DI	GCAATG	3 cut(s)	2790, 3841, 4233
Bse8I	GATNNNNATC	2 cut(s)	1866, 3244
BseBI	CCWGG	6 cut(s)	303, 1631, 1844, 3136, 3406, 3945
BseCI	ATCGAT	2 cut(s)	2503, 4371
BseGI	GGATG	9 cut(s)	40, 472, 872, 1261, 1867, 1938, 2494, 4308, 4541
BseJI	GATNNNNATC	2 cut(s)	1866, 3244
BseMI	GCAATG	3 cut(s)	2790, 3841, 4233
BseMII	CTCAG	8 cut(s)	2142, 2333, 2507, 2673, 2871, 3799, 4311, 4836
BseNI	ACTGG	7 cut(s)	226, 1254, 1449, 2121, 2997, 3080, 4169
BsePI	GCGCGC	1 cut(s)	574
BseRI	GAGGAG	6 cut(s)	754, 1560, 1988, 3205, 4820, 5039
BseSI	GKGCMC	1 cut(s)	4398
BseYI	CCCAGC	4 cut(s)	205, 803, 1080, 3830
BsgI	GTGCAG	3 cut(s)	2610, 4687, 4771
Bsh1236I	CGCG	2 cut(s)	576, 578
Bsh1285I	CGRYCG	1 cut(s)	740
BshNI	GGYRCC	3 cut(s)	64, 1715, 3291
BshTI	ACCGGT	1 cut(s)	67
BshVI	ATCGAT	2 cut(s)	2503, 4371
BsiEI	CGRYCG	1 cut(s)	740
BsiHKAI	GWGCWC	4 cut(s)	3749, 3784, 4783, 5217
BsiSI	CCGG	6 cut(s)	29, 68, 614, 4014, 4496, 4796
BslFI	GGGAC	4 cut(s)	2831, 2995, 3959, 4526
BsmAI	GTCTC	9 cut(s)	1194, 1435, 1542, 1841, 2269, 3088, 3114, 3122, 3262
BsmFI	GGGAC	4 cut(s)	2831, 2995, 3959, 4526
BsmI	GAATGC	5 cut(s)	619, 1177, 3015, 3631, 4159
Bso31I	GGTCTC	1 cut(s)	3262
Bsp1286I	GDGCHC	6 cut(s)	206, 3749, 3784, 4398, 4783, 5217
Bsp1407I	TGTACA	1 cut(s)	172
Bsp1720I	GCTNAGC	2 cut(s)	1398, 4320
Bsp19I	CCATGG	1 cut(s)	4360
BspACI	CCGC	6 cut(s)	275, 560, 578, 2459, 2939, 3285
BspCNI	CTCAG	8 cut(s)	2143, 2332, 2508, 2672, 2870, 3798, 4312, 4837
BspDI	ATCGAT	2 cut(s)	2503, 4371
BspFNI	CGCG	2 cut(s)	576, 578
BspMAI	CTGCAG	5 cut(s)	394, 412, 1528, 3238, 4837
BspMI	ACCTGC	4 cut(s)	904, 1756, 3766, 4174
BspOI	GCTAGC	1 cut(s)	4319
BspT107I	GGYRCC	3 cut(s)	64, 1715, 3291
BspTNI	GGTCTC	1 cut(s)	3262
BsrBI	CCGCTC	1 cut(s)	3287
BsrDI	GCAATG	3 cut(s)	2790, 3841, 4233
BsrFI	RCCGGY	1 cut(s)	67
BsrGI	TGTACA	1 cut(s)	172
BsrI	ACTGG	7 cut(s)	226, 1254, 1449, 2121, 2997, 3080, 4169
BssAI	RCCGGY	1 cut(s)	67
BssHII	GCGCGC	1 cut(s)	574
BssNI	GRCGYC	1 cut(s)	3292
BssT1I	CCWWGG	5 cut(s)	59, 2770, 3645, 4360, 5133
Bst2UI	CCWGG	6 cut(s)	303, 1631, 1844, 3136, 3406, 3945
Bst6I	CTCTTC	3 cut(s)	93, 1981, 4805
BstACI	GRCGYC	1 cut(s)	3292
BstAPI	GCANNNNNTGC	5 cut(s)	449, 1172, 2012, 2176, 2311
BstAUI	TGTACA	1 cut(s)	172
BstDSI	CCRYGG	3 cut(s)	124, 2636, 4360
BstF5I	GGATG	9 cut(s)	40, 472, 872, 1261, 1867, 1938, 2494, 4308, 4541
BstFNI	CGCG	2 cut(s)	576, 578
BstH2I	RGCGCY	1 cut(s)	3295
BstHHI	GCGC	3 cut(s)	576, 578, 3294
BstMAI	GTCTC	9 cut(s)	1194, 1435, 1542, 1841, 2269, 3088, 3114, 3122, 3262
BstMCI	CGRYCG	1 cut(s)	740
BstNI	CCWGG	6 cut(s)	303, 1631, 1844, 3136, 3406, 3945
BstSCI	CCNGG	9 cut(s)	301, 613, 1629, 1842, 3134, 3404, 3943, 4494, 4795
BstSFI	CTRYAG	9 cut(s)	390, 408, 933, 1524, 2142, 3234, 4029, 4833, 4839
BstSLI	GKGCMC	1 cut(s)	4398
BstUI	CGCG	2 cut(s)	576, 578
BstV2I	GAAGAC	3 cut(s)	1697, 2427, 5007
BstX2I	RGATCY	5 cut(s)	1766, 3401, 3769, 5029, 5110
BstXI	CCANNNNNNTGG	3 cut(s)	841, 1286, 2365
BstYI	RGATCY	5 cut(s)	1766, 3401, 3769, 5029, 5110
Bsu15I	ATCGAT	2 cut(s)	2503, 4371
Bsu36I	CCTNAGG	1 cut(s)	1182
BsuI	GTATCC	1 cut(s)	2365
BsuTUI	ATCGAT	2 cut(s)	2503, 4371
BtgI	CCRYGG	3 cut(s)	124, 2636, 4360
BtsCI	GGATG	9 cut(s)	40, 472, 872, 1261, 1867, 1938, 2494, 4308, 4541
BtsI	GCAGTG	2 cut(s)	334, 1533
BveI	ACCTGC	4 cut(s)	904, 1756, 3766, 4174
CaiI	CAGNNNCTG	4 cut(s)	1444, 3707, 4189, 5162
CfoI	GCGC	3 cut(s)	576, 578, 3294
Cfr10I	RCCGGY	1 cut(s)	67
Cfr13I	GGNCC	6 cut(s)	48, 831, 2720, 3278, 4540, 4799
ClaI	ATCGAT	2 cut(s)	2503, 4371
CspAI	ACCGGT	1 cut(s)	67
DinI	GGCGCC	1 cut(s)	3293
DraI	TTTAAA	1 cut(s)	1957
DraIII	CACNNNGTG	2 cut(s)	4991, 5221
EaeI	YGGCCR	5 cut(s)	483, 1627, 1864, 4191, 4625
Eam1104I	CTCTTC	3 cut(s)	93, 1981, 4805
EarI	CTCTTC	3 cut(s)	93, 1981, 4805
Ecl136II	GAGCTC	1 cut(s)	3747
Eco130I	CCWWGG	5 cut(s)	59, 2770, 3645, 4360, 5133
Eco24I	GRGCYC	2 cut(s)	206, 3749
Eco31I	GGTCTC	1 cut(s)	3262
Eco32I	GATATC	1 cut(s)	3346
Eco47I	GGWCC	4 cut(s)	48, 2720, 3278, 4540
Eco53kI	GAGCTC	1 cut(s)	3747
Eco57I	CTGAAG	6 cut(s)	359, 1656, 2736, 3069, 3667, 4892
Eco81I	CCTNAGG	1 cut(s)	1182
EcoICRI	GAGCTC	1 cut(s)	3747
EcoO109I	RGGNCCY	3 cut(s)	2720, 3278, 4540
EcoRI	GAATTC	4 cut(s)	2059, 2191, 4326, 4970
EcoRII	CCWGG	6 cut(s)	301, 1629, 1842, 3134, 3404, 3943
EcoRV	GATATC	1 cut(s)	3346
EcoT14I	CCWWGG	5 cut(s)	59, 2770, 3645, 4360, 5133
EcoT22I	ATGCAT	1 cut(s)	3017
EcoT38I	GRGCYC	2 cut(s)	206, 3749
EgeI	GGCGCC	1 cut(s)	3293
EheI	GGCGCC	1 cut(s)	3293
ErhI	CCWWGG	5 cut(s)	59, 2770, 3645, 4360, 5133
FalI	AAGNNNNNCTT	4 cut(s)	2637, 2669, 3604, 3636
FaqI	GGGAC	4 cut(s)	2831, 2995, 3959, 4526
FauNDI	CATATG	1 cut(s)	3775
FbaI	TGATCA	2 cut(s)	2422, 4645
FblI	GTMKAC	2 cut(s)	2781, 5200
FokI	GGATG	9 cut(s)	47, 459, 859, 1268, 1874, 1925, 2501, 4315, 4548
FriOI	GRGCYC	2 cut(s)	206, 3749
FspBI	CTAG	9 cut(s)	234, 894, 1319, 1368, 1412, 1464, 1752, 4316, 4583
GlaI	GCGC	3 cut(s)	575, 577, 3293
GsaI	CCCAGC	4 cut(s)	209, 807, 1084, 3834
GsuI	CTGGAG	5 cut(s)	3090, 3591, 4553, 4622, 4881
HaeII	RGCGCY	1 cut(s)	3295
HapII	CCGG	6 cut(s)	29, 68, 614, 4014, 4496, 4796
HhaI	GCGC	3 cut(s)	576, 578, 3294
Hin1I	GRCGYC	1 cut(s)	3292
Hin6I	GCGC	3 cut(s)	574, 576, 3292
HinP1I	GCGC	3 cut(s)	574, 576, 3292
HincII	GTYRAC	8 cut(s)	436, 1247, 1921, 2782, 2854, 3065, 4162, 5201
HindII	GTYRAC	8 cut(s)	436, 1247, 1921, 2782, 2854, 3065, 4162, 5201
HpaII	CCGG	6 cut(s)	29, 68, 614, 4014, 4496, 4796
Hpy99I	CGWCG	1 cut(s)	2295
HpyCH4IV	ACGT	4 cut(s)	399, 1212, 2629, 2824
HpySE526I	ACGT	4 cut(s)	399, 1212, 2629, 2824
Hsp92I	GRCGYC	1 cut(s)	3292
HspAI	GCGC	3 cut(s)	574, 576, 3292
KasI	GGCGCC	1 cut(s)	3291
KflI	GGGWCCC	1 cut(s)	4540
KpnI	GGTACC	1 cut(s)	68
Ksp22I	TGATCA	2 cut(s)	2422, 4645
LweI	GCATC	8 cut(s)	481, 2002, 2166, 2529, 3022, 4213, 4377, 4587
MaeI	CTAG	9 cut(s)	234, 894, 1319, 1368, 1412, 1464, 1752, 4316, 4583
MaeII	ACGT	4 cut(s)	399, 1212, 2629, 2824
MbiI	CCGCTC	1 cut(s)	3287
MfeI	CAATTG	3 cut(s)	176, 219, 3525
MflI	RGATCY	5 cut(s)	1766, 3401, 3769, 5029, 5110
MhlI	GDGCHC	6 cut(s)	206, 3749, 3784, 4398, 4783, 5217
MlsI	TGGCCA	4 cut(s)	485, 1629, 1866, 4627
MluNI	TGGCCA	4 cut(s)	485, 1629, 1866, 4627
Mly113I	GGCGCC	1 cut(s)	3292
MmeI	TCCRAC	3 cut(s)	323, 4492, 4573
Mox20I	TGGCCA	4 cut(s)	485, 1629, 1866, 4627
Mph1103I	ATGCAT	1 cut(s)	3017
MroXI	GAANNNNTTC	5 cut(s)	499, 719, 2105, 3939, 4461
MscI	TGGCCA	4 cut(s)	485, 1629, 1866, 4627
MslI	CAYNNNNRTG	5 cut(s)	624, 1047, 1837, 3798, 3870
Msp20I	TGGCCA	4 cut(s)	485, 1629, 1866, 4627
MspA1I	CMGCKG	3 cut(s)	389, 3991, 4838
MspI	CCGG	6 cut(s)	29, 68, 614, 4014, 4496, 4796
MspR9I	CCNGG	9 cut(s)	303, 615, 1631, 1844, 3136, 3406, 3945, 4496, 4797
MunI	CAATTG	3 cut(s)	176, 219, 3525
Mva1269I	GAATGC	5 cut(s)	619, 1177, 3015, 3631, 4159
MvaI	CCWGG	6 cut(s)	303, 1631, 1844, 3136, 3406, 3945
MvnI	CGCG	2 cut(s)	576, 578
NarI	GGCGCC	1 cut(s)	3292
NciI	CCSGG	3 cut(s)	615, 4496, 4797
NcoI	CCATGG	1 cut(s)	4360
NdeI	CATATG	1 cut(s)	3775
NheI	GCTAGC	1 cut(s)	4315
NmeAIII	GCCGAG	1 cut(s)	3268
NsiI	ATGCAT	1 cut(s)	3017
OliI	CACNNNNGTG	2 cut(s)	1837, 3798
PaeI	GCATGC	3 cut(s)	1589, 2803, 3967
PaqCI	CACCTGC	3 cut(s)	904, 1756, 4174
PauI	GCGCGC	1 cut(s)	574
PciI	ACATGT	2 cut(s)	2249, 5127
PctI	GAATGC	5 cut(s)	619, 1177, 3015, 3631, 4159
PdmI	GAANNNNTTC	5 cut(s)	499, 719, 2105, 3939, 4461
PflMI	CCANNNNNTGG	1 cut(s)	1444
PfoI	TCCNGGA	2 cut(s)	3134, 3943
PinAI	ACCGGT	1 cut(s)	67
PluTI	GGCGCC	1 cut(s)	3295
PpuMI	RGGWCCY	3 cut(s)	2720, 3278, 4540
PscI	ACATGT	2 cut(s)	2249, 5127
PsiI	TTATAA	1 cut(s)	4256
Psp124BI	GAGCTC	1 cut(s)	3749
Psp5II	RGGWCCY	3 cut(s)	2720, 3278, 4540
Psp6I	CCWGG	6 cut(s)	301, 1629, 1842, 3134, 3404, 3943
PspFI	CCCAGC	4 cut(s)	205, 803, 1080, 3830
PspGI	CCWGG	6 cut(s)	301, 1629, 1842, 3134, 3404, 3943
PspPI	GGNCC	6 cut(s)	48, 831, 2720, 3278, 4540, 4799
PspPPI	RGGWCCY	3 cut(s)	2720, 3278, 4540
PsrI	GAACNNNNNNTAC	2 cut(s)	4807, 4839
PstI	CTGCAG	5 cut(s)	394, 412, 1528, 3238, 4837
PstNI	CAGNNNCTG	4 cut(s)	1444, 3707, 4189, 5162
PsuI	RGATCY	5 cut(s)	1766, 3401, 3769, 5029, 5110
PteI	GCGCGC	1 cut(s)	574
PvuII	CAGCTG	3 cut(s)	389, 3991, 4838
RseI	CAYNNNNRTG	5 cut(s)	624, 1047, 1837, 3798, 3870
SacI	GAGCTC	1 cut(s)	3749
SalI	GTCGAC	2 cut(s)	2780, 5199
Sau96I	GGNCC	6 cut(s)	48, 831, 2720, 3278, 4540, 4799
ScaI	AGTACT	1 cut(s)	3736
ScrFI	CCNGG	9 cut(s)	303, 615, 1631, 1844, 3136, 3406, 3945, 4496, 4797
SduI	GDGCHC	6 cut(s)	206, 3749, 3784, 4398, 4783, 5217
SfaNI	GCATC	8 cut(s)	481, 2002, 2166, 2529, 3022, 4213, 4377, 4587
SfcI	CTRYAG	9 cut(s)	390, 408, 933, 1524, 2142, 3234, 4029, 4833, 4839
SfoI	GGCGCC	1 cut(s)	3293
SinI	GGWCC	4 cut(s)	48, 2720, 3278, 4540
SmiMI	CAYNNNNRTG	5 cut(s)	624, 1047, 1837, 3798, 3870
SmlI	CTYRAG	9 cut(s)	337, 477, 664, 2211, 3198, 3225, 3750, 3796, 5186
SmoI	CTYRAG	9 cut(s)	337, 477, 664, 2211, 3198, 3225, 3750, 3796, 5186
SphI	GCATGC	3 cut(s)	1589, 2803, 3967
SsiI	CCGC	6 cut(s)	275, 560, 578, 2459, 2939, 3285
SspDI	GGCGCC	1 cut(s)	3291
SspI	AATATT	5 cut(s)	1781, 1792, 2055, 3842, 4111
SspMI	CTAG	9 cut(s)	234, 894, 1319, 1368, 1412, 1464, 1752, 4316, 4583
SstI	GAGCTC	1 cut(s)	3749
StyD4I	CCNGG	9 cut(s)	301, 613, 1629, 1842, 3134, 3404, 3943, 4494, 4795
StyI	CCWWGG	5 cut(s)	59, 2770, 3645, 4360, 5133
TaiI	ACGT	4 cut(s)	402, 1215, 2632, 2827
TaqII	GACCGA	3 cut(s)	36, 754, 3208
TatI	WGTACW	4 cut(s)	172, 2384, 3373, 3734
Van91I	CCANNNNNTGG	1 cut(s)	1444
VpaK11BI	GGWCC	4 cut(s)	48, 2720, 3278, 4540
XapI	RAATTY	7 cut(s)	2059, 2191, 3185, 3565, 3904, 4326, 4970
XbaI	TCTAGA	1 cut(s)	1318
XcmI	CCANNNNNNNNNTGG	2 cut(s)	147, 2239
XmiI	GTMKAC	2 cut(s)	2781, 5200
XmnI	GAANNNNTTC	5 cut(s)	499, 719, 2105, 3939, 4461
XspI	CTAG	9 cut(s)	234, 894, 1319, 1368, 1412, 1464, 1752, 4316, 4583
ZrmI	AGTACT	1 cut(s)	3736
Zsp2I	ATGCAT	1 cut(s)	3017

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.