Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0002428

Physical Location & Seq

Genomic Coordinates Reverse (-)

6784621 .. 6788246

Gene Structure 3626 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1071800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3015 bp

ATGAAGTTTGGAAGGGGATTTTCGGTTCCCCAAGATGACGATCTACAGTTCATGGATCCATGGGTACCCATGACTCCAGAGAAGCTGATTCTGGCAAAGGGTCATCCAATACCAGTCGACCACCGCGGGAACCTCCTGCAAGGAGCAAACTGGCAGCAACAACTGACTGGAATTTCAAGGGAACATGTACCGGTTAGTGTCAACTACAATGGCATGAACCAAGATGTTAGCCCAAATGGACAGCTACTTAGAAATGGAGGGCAATATAGTTCTGATGGAAGTCTGGCTAAGGAAAATCTGATGATCAATCACTCTGCAGGCTCATTCACGCAGTTGTTGCACGGTGACATCTCGTGTTGGAACAACAATCCAATGACGCAACTGCTGCATGATAAGGCAGCTTATGTTGCCTCCGCAAACATGAATCTGGGCAGAAGCGTGGACATAGCAGCAAACACGCCGCTAATTCCCAAGTTGCATCCTCAATCGGGAAACCAAGGACACAACTTGGGAAGTTACTTGCTCACCAAGCAAAATTGCAGCATTTCATATCCTTCAAGTAACATGATGAGCAGGTCCTTGGTTATGGATTTTCCATTCCCAGTTGACAACAGTCGGCGAGATTCCAACTCATTCCATTGGTTATTCGGAAACCAAAATCACTGCTCAAGTTTGAGCTCAAACCTGTTGAGTAATGGTGACAGTTCATCCCAGATAAGTCAATATGGTTTCCTACCAAGCTATGATCTAAACTCCTTGCCAAGTACAGAAGGCGACACTGCCTCAGGTGTTGCCGGCCAACTCCAATTCACGACAAATGAGGCCAAGAATTTGGAGAACGACCAGCTTTCTGCAATGCTGAAATCCTTGACGGACGAAAGTGCTAGGAAGGAAAAAGGCAAGCAGGTCTTGTCTATAGAAGATGAAGCAACTCAAAAAAATGGTGATGGCCGCTTGCAGAACATTGTGGAGTCATCATCTGCAGCCATTTCTACACCGTACGACAAAAACAAAGAGTCTGGCAGGGGAGGCGACAGAGGGATTGATCTGAATAAGACGCCCCAACAGAAACCACCCAAGCGAAGAAAACACAGGCCGAAAGTAATCGTTGAGGGTAAGCCCAAAAGGACGCCAAAACCTGCAACTCCAAAGAATACAGAGTCCAAGGAGACCCGACTGGAAAAGAGGAAGTATGCAAGAAAGAATGTCCAAAAGGAATCCCCAAGTCAATTGGCAGAGGTAACACGGGAGACAGCAGGCCCTACTGCTGGAAAAAGTGCAAAATCATGCAGAAGAGTTTTGCATTTTGATTTGGAAAAGACCGTGGATGAAAACCTATGCAGAGAAATTGGTCAGCAAGAGAACAAGAGGACTTTTGATTTGAATTTTGACTCTCAAGGGACACATGCGGGCACTGAAACGAACCAGGTTTTGACTGAAAAGGCAGCTGAGCGAAGTGTCCTACTGAACGAATTGATGGTAGATAAGCATATCCCAAGCACTAAGAGGAACCCTATCCCTTCCATGAGTCTTATGCCAAATAACTATACATTCCGGCCAGAAAGCCAAGCATCTGCATCCCTGCTTGCGACAGCAAAAGACATGCATCTGAAAAACTCACATGTCATGAGGAGACGAACAGAGACTGCAAATTCTGATCTATGCCAGAGAAAATGCAGAGATGAAGACACTCCTGTGCAGCAACATACCCATGCTGAAGGAATAGACCAAGATGTCATTCGAGCAGAGATTAGATGTGAAAACCTTCAGAAGACTAAAGAAAATGTCAACCAGGGTGATTCTTTACTAAAAATTCTCTCCCTTCCAAGTGAAGGAAGGGGATCCAAGAGGGAATTTTTTCAAACTGCTGAGCACCCTTGTCGTTCTACCAACAATCCACCAAGTTCACTGTCATTCCAAGAGATACTTCAATTGGATAGAATTCAGAAAAACAGTGGCACTCCCAGCAAAGATTGTTCAGGAAGTCGTAAGAAGAAGAAAGTTGAGAATGGACACTTGAGCATCAGTACTATGCCTAGTAAAGTTACAGCAGTTGAAAAGTGTCTGGGAAAAGTTGATAGAACAGGGGAAAATAATCTCAATTCAAATGGATTTGCATCGAAGAACCATACAATACTGAGTTCTTACTTTGAAAATAACAAAATGATTGACAGAAGGAACAAAGGGATCAGCAAGTTTATGACTGACAGGTATGCCTACTCCATCACTTCTGGGAATGGTTTTCTACATCGGCCAATCTCATCCAAATCAAATTCATGCCAAGGTTCCACTCAAGTTCTTAGCTTTTCCACCCATTCAACAAGTCAAACATGTAACCAACTAGCCTCATCACCTCCTAAAAAATCCTTTCAGCTAGGAACCAAGCTGGTATCTCATGATAATATGTCAGCAAAGAAGCAGGCTGGGGGAACTACTGTATTGAAAATTTCATCAGGTACAGATAAAGTCCGGCAAGAGAAGGATGCCTCGTATGATTACCAGCAACCTTCTGCAATTGCAATTGGGTTTCCAATAAGAACAAAAAGTACAATACCAATAGATGATATCATACATCAATTTAATGGTCTCAACCTCAATGGAAGCTGCAGCGAAATTCTAGAGCAGGAGAATGCACTTGTTCCTTACAAAGGAGATGGTGCAATTGCTCCCTTTAAAGGTATTATTAAGAAACGTAAGTCGAGGCCGAGAGTAGAGCTTGACCCAGAAACAAATAGGATATGGAATCTATTGATGGGCAAGGAGGGAAGCGAAGGTGTTGAAAGAACTGATAATGAGAAGGAGAAGTATTGGGAAGACGAAAGAAAGGTTTTCCAAGGACGAGTTGACTCATTCATTGCACGCATGCACCTTGTTCAAGAAATCTGCAGCGCAACATGCATTTCCAGTTCAGCACGAAAATCTAAAGTATTCAACTTGAAAGTCAATGCAAGATGTAAACTCAACCAAGAAAACTCGAACTTGACTACATATAAAACATGTAAAAAACCAGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0003906 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006349 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010468 GO:0016787 GO:0016798 GO:0016799 GO:0019104 GO:0019222 GO:0022414 GO:0032259 GO:0032501 GO:0032502 GO:0034641 GO:0040029 GO:0043076 GO:0043078 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0044728 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0060255 GO:0061458 GO:0065007 GO:0071514 GO:0071704 GO:0090304 GO:0140097 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Perm-CXXC RRM_DME

Protein Analysis

1005

Amino Acids

111.49

Weight (kDa)

9.31

Isoelectric Point (pI)

42.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002428)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04560 AT5G04560 AT5G04560
fragaria_vesca	FvH4_2g10170 FvH4_2g10170 FvH4_2g10170 FvH4_2g10170 FvH4_2g10170
malus_domestica	MD02G1245300.v1.1 MD07G1071800.v1.1 MD09G1259000.v1.1 MD09G1259100.v1.1 MD17G1253500.v1.1 MD17G1253600.v1.1
prunus_persica	Prupe.2G089400_v2.0.a1 Prupe.7G005000_v2.0.a1 Prupe.7G005000_v2.0.a1 Prupe.7G005000_v2.0.a1 Prupe.7G005000_v2.0.a1 Prupe.7G005000_v2.0.a1 Prupe.7G005000_v2.0.a1
pyrus_communis	pycom02g21110 pycom09g17380 pycom17g25620 pycom17g25630
rosa_chinensis	RchiOBHm_Chr6g0267351 RchiOBHm_Chr6g0267361
rosa_laevigata	RLG00000014013
rosa_multiflora	Rmu_sc0000746.1_g000002 Rmu_sc0019664.1_g000001
rosa_roxburghii	Rroxscaffold_7G00200830
rosa_rugosa	Rorug06G0031600 Rorug06G0031700 Rorug06G0031800 Rorug06G0031900 Rorug06G0032000
rosa_samantha	Rh6AG153500 Rh6BG153200 Rh6CG149300 Rh6DG137600
rosa_wichuraiana	Rw6G013200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1733
Acc36I	ACCTGC	3 cut(s)	564, 895, 1147
Acc65I	GGTACC	1 cut(s)	64
AccB1I	GGYRCC	1 cut(s)	64
AccI	GTMKAC	1 cut(s)	117
AccII	CGCG	1 cut(s)	126
AciI	CCGC	6 cut(s)	124, 126, 414, 461, 952, 1409
AclWI	GGATC	5 cut(s)	50, 63, 1836, 1849, 2195
AcoI	YGGCCR	4 cut(s)	796, 949, 1556, 2252
AcuI	CTGAAG	2 cut(s)	1737, 1751
AcyI	GRCGYC	2 cut(s)	1058, 1130
AfaI	GTAC	7 cut(s)	66, 189, 766, 1001, 2029, 2458, 2548
AfiI	CCNNNNNNNGG	5 cut(s)	488, 1268, 1832, 2648, 2675
AflIII	ACRYGT	4 cut(s)	184, 1621, 2330, 2996
AgeI	ACCGGT	1 cut(s)	190
AjnI	CCWGG	3 cut(s)	1425, 1791, 3007
AjuI	GAANNNNNNNTTGG	4 cut(s)	1722, 1754, 1911, 1943
AleI	CACNNNNGTG	1 cut(s)	1694
AloI	GAACNNNNNNTCC	2 cut(s)	9, 41
Alw21I	GWGCWC	2 cut(s)	680, 1875
Alw26I	GTCTC	5 cut(s)	1163, 1244, 1627, 1637, 2591
AlwI	GGATC	5 cut(s)	50, 63, 1836, 1849, 2195
AlwNI	CAGNNNCTG	1 cut(s)	1646
AoxI	GGCC	8 cut(s)	796, 822, 949, 1094, 1258, 1556, 2252, 2702
ArsI	GACNNNNNNTTYG	2 cut(s)	1363, 1395
AsiGI	ACCGGT	1 cut(s)	190
Asp700I	GAANNNNTTC	2 cut(s)	1764, 1857
Asp718I	GGTACC	1 cut(s)	64
AspLEI	GCGC	1 cut(s)	2891
AspS9I	GGNCC	2 cut(s)	576, 1259
AsuHPI	GGTGA	6 cut(s)	356, 517, 710, 956, 1808, 2343
AvaII	GGWCC	1 cut(s)	576
AxyI	CCTNAGG	1 cut(s)	784
BaeGI	GKGCMC	1 cut(s)	1415
BamHI	GGATCC	2 cut(s)	55, 1841
BanI	GGYRCC	1 cut(s)	64
BanII	GRGCYC	1 cut(s)	680
BauI	CACGAG	1 cut(s)	352
BbsI	GAAGAC	3 cut(s)	1692, 1778, 2820
Bbv12I	GWGCWC	2 cut(s)	680, 1875
BccI	CCATC	6 cut(s)	269, 941, 1471, 2231, 2648, 2746
BcgI	CGANNNNNNTGC	2 cut(s)	1862, 1896
BciT130I	CCWGG	3 cut(s)	1427, 1793, 3009
BclI	TGATCA	1 cut(s)	303
BcoDI	GTCTC	5 cut(s)	1163, 1244, 1627, 1637, 2591
BfaI	CTAG	5 cut(s)	885, 2037, 2342, 2375, 2618
BfmI	CTRYAG	6 cut(s)	44, 315, 915, 981, 2605, 2884
BfuAI	ACCTGC	3 cut(s)	564, 895, 1147
BlpI	GCTNAGC	2 cut(s)	1449, 1869
BmcAI	AGTACT	1 cut(s)	2029
Bme1390I	CCNGG	3 cut(s)	1427, 1793, 3009
Bme18I	GGWCC	1 cut(s)	576
BmgT120I	GGNCC	2 cut(s)	576, 1259
BmiI	GGNNCC	8 cut(s)	27, 57, 66, 131, 1511, 1843, 2287, 2380
BmrFI	CCNGG	3 cut(s)	1427, 1793, 3009
BmrI	ACTGGG	1 cut(s)	596
BmsI	GCATC	7 cut(s)	487, 1580, 1586, 1615, 2031, 2126, 2473
BmuI	ACTGGG	1 cut(s)	596
BoxI	GACNNNNGTC	1 cut(s)	612
BpiI	GAAGAC	3 cut(s)	1692, 1778, 2820
BpmI	CTGGAG	1 cut(s)	60
Bpu10I	CCTNAGC	1 cut(s)	288
Bpu1102I	GCTNAGC	2 cut(s)	1449, 1869
BpuEI	CTTGAG	4 cut(s)	652, 1380, 2038, 2277
BsaBI	GATNNNNATC	2 cut(s)	39, 2116
BsaHI	GRCGYC	2 cut(s)	1058, 1130
BsaI	GGTCTC	2 cut(s)	1163, 2591
BsaJI	CCNNGG	9 cut(s)	59, 124, 496, 579, 1164, 1323, 1792, 2281, 2833
BsaWI	WCCGGW	1 cut(s)	190
Bsc4I	CCNNNNNNNGG	5 cut(s)	488, 1268, 1832, 2648, 2675
Bse118I	RCCGGY	2 cut(s)	190, 794
Bse1I	ACTGG	6 cut(s)	113, 155, 172, 602, 1182, 2904
Bse21I	CCTNAGG	1 cut(s)	784
Bse3DI	GCAATG	2 cut(s)	861, 2853
Bse8I	GATNNNNATC	2 cut(s)	39, 2116
BseBI	CCWGG	3 cut(s)	1427, 1793, 3009
BseDI	CCNNGG	9 cut(s)	59, 124, 496, 579, 1164, 1323, 1792, 2281, 2833
BseGI	GGATG	7 cut(s)	103, 478, 707, 1333, 1577, 2261, 2488
BseJI	GATNNNNATC	2 cut(s)	39, 2116
BseLI	CCNNNNNNNGG	5 cut(s)	488, 1268, 1832, 2648, 2675
BseMI	GCAATG	2 cut(s)	861, 2853
BseMII	CTCAG	4 cut(s)	798, 1440, 1860, 2129
BseNI	ACTGG	6 cut(s)	113, 155, 172, 602, 1182, 2904
BseRI	GAGGAG	1 cut(s)	1645
BseSI	GKGCMC	1 cut(s)	1415
BseYI	CCCAGC	2 cut(s)	1964, 2423
BsgI	GTGCAG	1 cut(s)	1718
Bsh1236I	CGCG	1 cut(s)	126
BshFI	GGCC	8 cut(s)	798, 824, 951, 1096, 1260, 1558, 2254, 2704
BshNI	GGYRCC	1 cut(s)	64
BshTI	ACCGGT	1 cut(s)	190
BsiHKAI	GWGCWC	2 cut(s)	680, 1875
BsiSI	CCGG	4 cut(s)	191, 795, 1555, 2470
BsiWI	CGTACG	1 cut(s)	999
BslFI	GGGAC	1 cut(s)	1414
BslI	CCNNNNNNNGG	5 cut(s)	488, 1268, 1832, 2648, 2675
BsmAI	GTCTC	5 cut(s)	1163, 1244, 1627, 1637, 2591
BsmBI	CGTCTC	1 cut(s)	1627
BsmFI	GGGAC	1 cut(s)	1414
BsmI	GAATGC	1 cut(s)	2635
BsnI	GGCC	8 cut(s)	798, 824, 951, 1096, 1260, 1558, 2254, 2704
Bso31I	GGTCTC	2 cut(s)	1163, 2591
Bsp1286I	GDGCHC	3 cut(s)	680, 1415, 1875
Bsp143I	GATC	8 cut(s)	40, 55, 303, 745, 1045, 1657, 1841, 2187
Bsp1720I	GCTNAGC	2 cut(s)	1449, 1869
Bsp19I	CCATGG	1 cut(s)	59
BspACI	CCGC	6 cut(s)	124, 126, 414, 461, 952, 1409
BspANI	GGCC	8 cut(s)	798, 824, 951, 1096, 1260, 1558, 2254, 2704
BspCNI	CTCAG	4 cut(s)	797, 1441, 1861, 2130
BspFNI	CGCG	1 cut(s)	126
BspHI	TCATGA	2 cut(s)	1626, 2395
BspLI	GGNNCC	8 cut(s)	27, 57, 66, 131, 1511, 1843, 2287, 2380
BspMAI	CTGCAG	4 cut(s)	319, 985, 2609, 2888
BspMI	ACCTGC	3 cut(s)	564, 895, 1147
BspPI	GGATC	5 cut(s)	50, 63, 1836, 1849, 2195
BspT107I	GGYRCC	1 cut(s)	64
BspTNI	GGTCTC	2 cut(s)	1163, 2591
BsrDI	GCAATG	2 cut(s)	861, 2853
BsrFI	RCCGGY	2 cut(s)	190, 794
BsrI	ACTGG	6 cut(s)	113, 155, 172, 602, 1182, 2904
BssAI	RCCGGY	2 cut(s)	190, 794
BssECI	CCNNGG	9 cut(s)	59, 124, 496, 579, 1164, 1323, 1792, 2281, 2833
BssMI	GATC	8 cut(s)	40, 55, 303, 745, 1045, 1657, 1841, 2187
BssNI	GRCGYC	2 cut(s)	1058, 1130
BssSI	CACGAG	1 cut(s)	352
BssT1I	CCWWGG	6 cut(s)	59, 496, 579, 1164, 2281, 2833
Bst2BI	CACGAG	1 cut(s)	352
Bst2UI	CCWGG	3 cut(s)	1427, 1793, 3009
Bst4CI	ACNGT	9 cut(s)	48, 344, 614, 704, 999, 1324, 1911, 1955, 2437
Bst6I	CTCTTC	1 cut(s)	1288
BstACI	GRCGYC	2 cut(s)	1058, 1130
BstAPI	GCANNNNNTGC	2 cut(s)	337, 385
BstDEI	CTNAG	8 cut(s)	248, 288, 784, 1449, 1503, 1869, 2138, 2300
BstDSI	CCRYGG	3 cut(s)	59, 124, 1323
BstENI	CCTNNNNNAGG	1 cut(s)	2646
BstF5I	GGATG	7 cut(s)	103, 478, 707, 1333, 1577, 2261, 2488
BstFNI	CGCG	1 cut(s)	126
BstHHI	GCGC	1 cut(s)	2891
BstKTI	GATC	8 cut(s)	43, 58, 306, 748, 1048, 1660, 1844, 2190
BstMAI	GTCTC	5 cut(s)	1163, 1244, 1627, 1637, 2591
BstMBI	GATC	8 cut(s)	40, 55, 303, 745, 1045, 1657, 1841, 2187
BstMWI	GCNNNNNNNGC	7 cut(s)	337, 385, 407, 529, 1029, 1965, 2895
BstNI	CCWGG	3 cut(s)	1427, 1793, 3009
BstNSI	RCATGY	8 cut(s)	188, 1409, 1606, 1625, 2334, 2866, 2898, 3000
BstPAI	GACNNNNGTC	1 cut(s)	612
BstSCI	CCNGG	3 cut(s)	1425, 1791, 3007
BstSFI	CTRYAG	6 cut(s)	44, 315, 915, 981, 2605, 2884
BstSLI	GKGCMC	1 cut(s)	1415
BstUI	CGCG	1 cut(s)	126
BstV2I	GAAGAC	3 cut(s)	1692, 1778, 2820
BstX2I	RGATCY	2 cut(s)	55, 1841
BstXI	CCANNNNNNTGG	1 cut(s)	832
BstYI	RGATCY	2 cut(s)	55, 1841
Bsu36I	CCTNAGG	1 cut(s)	784
BsuRI	GGCC	8 cut(s)	798, 824, 951, 1096, 1260, 1558, 2254, 2704
BtgI	CCRYGG	3 cut(s)	59, 124, 1323
BtsCI	GGATG	7 cut(s)	103, 478, 707, 1333, 1577, 2261, 2488
BtsI	GCAGTG	2 cut(s)	661, 777
BtsIMutI	CAGTG	5 cut(s)	661, 777, 1413, 1907, 1960
BveI	ACCTGC	3 cut(s)	564, 895, 1147
CaiI	CAGNNNCTG	1 cut(s)	1646
CciI	TCATGA	2 cut(s)	1626, 2395
CfoI	GCGC	1 cut(s)	2891
Cfr10I	RCCGGY	2 cut(s)	190, 794
Cfr13I	GGNCC	2 cut(s)	576, 1259
Cfr42I	CCGCGG	1 cut(s)	127
CseI	GACGC	3 cut(s)	385, 1066, 1138
CsiI	ACCWGGT	1 cut(s)	1425
Csp6I	GTAC	7 cut(s)	65, 188, 765, 1000, 2028, 2457, 2547
CspAI	ACCGGT	1 cut(s)	190
CviQI	GTAC	7 cut(s)	65, 188, 765, 1000, 2028, 2457, 2547
DdeI	CTNAG	8 cut(s)	248, 288, 784, 1449, 1503, 1869, 2138, 2300
DpnI	GATC	8 cut(s)	42, 57, 305, 747, 1047, 1659, 1843, 2189
DpnII	GATC	8 cut(s)	40, 55, 303, 745, 1045, 1657, 1841, 2187
DraI	TTTAAA	1 cut(s)	2674
DrdI	GACNNNNNNGTC	1 cut(s)	1733
DseDI	GACNNNNNNGTC	1 cut(s)	1733
EaeI	YGGCCR	4 cut(s)	796, 949, 1556, 2252
Eam1104I	CTCTTC	1 cut(s)	1288
EarI	CTCTTC	1 cut(s)	1288
Ecl136II	GAGCTC	1 cut(s)	678
Eco130I	CCWWGG	6 cut(s)	59, 496, 579, 1164, 2281, 2833
Eco24I	GRGCYC	1 cut(s)	680
Eco31I	GGTCTC	2 cut(s)	1163, 2591
Eco32I	GATATC	1 cut(s)	2566
Eco47I	GGWCC	1 cut(s)	576
Eco53kI	GAGCTC	1 cut(s)	678
Eco57I	CTGAAG	2 cut(s)	1737, 1751
Eco81I	CCTNAGG	1 cut(s)	784
EcoICRI	GAGCTC	1 cut(s)	678
EcoNI	CCTNNNNNAGG	1 cut(s)	2646
EcoO109I	RGGNCCY	2 cut(s)	576, 1259
EcoRI	GAATTC	1 cut(s)	1941
EcoRII	CCWGG	3 cut(s)	1425, 1791, 3007
EcoRV	GATATC	1 cut(s)	2566
EcoT14I	CCWWGG	6 cut(s)	59, 496, 579, 1164, 2281, 2833
EcoT22I	ATGCAT	2 cut(s)	1608, 2900
EcoT38I	GRGCYC	1 cut(s)	680
ErhI	CCWWGG	6 cut(s)	59, 496, 579, 1164, 2281, 2833
Esp3I	CGTCTC	1 cut(s)	1627
FalI	AAGNNNNNCTT	4 cut(s)	893, 925, 1911, 1943
FaqI	GGGAC	1 cut(s)	1414
FauI	CCCGC	2 cut(s)	119, 1402
FbaI	TGATCA	1 cut(s)	303
FblI	GTMKAC	1 cut(s)	117
FokI	GGATG	7 cut(s)	90, 465, 694, 1340, 1564, 2248, 2495
FriOI	GRGCYC	1 cut(s)	680
FspBI	CTAG	5 cut(s)	885, 2037, 2342, 2375, 2618
GlaI	GCGC	1 cut(s)	2890
GsaI	CCCAGC	2 cut(s)	1968, 2427
GsuI	CTGGAG	1 cut(s)	60
HaeIII	GGCC	8 cut(s)	798, 824, 951, 1096, 1260, 1558, 2254, 2704
HapII	CCGG	4 cut(s)	191, 795, 1555, 2470
HgaI	GACGC	3 cut(s)	385, 1066, 1138
HhaI	GCGC	1 cut(s)	2891
Hin1I	GRCGYC	2 cut(s)	1058, 1130
Hin6I	GCGC	1 cut(s)	2889
HinP1I	GCGC	1 cut(s)	2889
HincII	GTYRAC	5 cut(s)	118, 202, 607, 1789, 2845
HindII	GTYRAC	5 cut(s)	118, 202, 607, 1789, 2845
HpaII	CCGG	4 cut(s)	191, 795, 1555, 2470
HphI	GGTGA	6 cut(s)	356, 517, 710, 956, 1808, 2343
Hpy166II	GTNNAC	8 cut(s)	118, 202, 442, 607, 1789, 1907, 2845, 2957
Hpy188I	TCNGA	8 cut(s)	274, 300, 650, 1050, 1611, 1657, 1770, 1947
Hpy188III	TCNNGA	8 cut(s)	77, 489, 811, 1627, 1980, 2396, 2618, 2876
Hpy8I	GTNNAC	8 cut(s)	118, 202, 442, 607, 1789, 1907, 2845, 2957
HpyCH4III	ACNGT	9 cut(s)	48, 344, 614, 704, 999, 1324, 1911, 1955, 2437
HpyCH4IV	ACGT	1 cut(s)	2692
HpyF10VI	GCNNNNNNNGC	7 cut(s)	337, 385, 407, 529, 1029, 1965, 2895
HpyF3I	CTNAG	8 cut(s)	248, 288, 784, 1449, 1503, 1869, 2138, 2300
HpySE526I	ACGT	1 cut(s)	2692
Hsp92I	GRCGYC	2 cut(s)	1058, 1130
HspAI	GCGC	1 cut(s)	2889
KpnI	GGTACC	1 cut(s)	68
KroI	GCCGGC	1 cut(s)	794
KroNI	GCCGGC	1 cut(s)	796
Ksp22I	TGATCA	1 cut(s)	303
KspI	CCGCGG	1 cut(s)	127
Kzo9I	GATC	8 cut(s)	40, 55, 303, 745, 1045, 1657, 1841, 2187
LmnI	GCTCC	2 cut(s)	143, 2671
LweI	GCATC	7 cut(s)	487, 1580, 1586, 1615, 2031, 2126, 2473
MabI	ACCWGGT	1 cut(s)	1425
MaeI	CTAG	5 cut(s)	885, 2037, 2342, 2375, 2618
MaeII	ACGT	1 cut(s)	2692
MaeIII	GTNAC	7 cut(s)	344, 515, 560, 698, 1240, 2044, 2333
MalI	GATC	8 cut(s)	42, 57, 305, 747, 1047, 1659, 1843, 2189
MboI	GATC	8 cut(s)	40, 55, 303, 745, 1045, 1657, 1841, 2187
MboII	GAAGA	9 cut(s)	932, 1095, 1305, 1697, 1783, 2005, 2008, 2134, 2825
MfeI	CAATTG	5 cut(s)	1229, 1931, 2514, 2520, 2661
MflI	RGATCY	2 cut(s)	55, 1841
MhlI	GDGCHC	3 cut(s)	680, 1415, 1875
MlyI	GAGTC	7 cut(s)	67, 980, 1025, 1169, 1385, 1537, 2840
MmeI	TCCRAC	2 cut(s)	338, 651
Mph1103I	ATGCAT	2 cut(s)	1608, 2900
MroNI	GCCGGC	1 cut(s)	794
MroXI	GAANNNNTTC	2 cut(s)	1764, 1857
MseI	TTAA	3 cut(s)	2580, 2673, 2685
MslI	CAYNNNNRTG	2 cut(s)	1694, 1710
MspA1I	CMGCKG	2 cut(s)	126, 1448
MspI	CCGG	4 cut(s)	191, 795, 1555, 2470
MspR9I	CCNGG	3 cut(s)	1427, 1793, 3009
MunI	CAATTG	5 cut(s)	1229, 1931, 2514, 2520, 2661
Mva1269I	GAATGC	1 cut(s)	2635
MvaI	CCWGG	3 cut(s)	1427, 1793, 3009
MvnI	CGCG	1 cut(s)	126
MwoI	GCNNNNNNNGC	7 cut(s)	337, 385, 407, 529, 1029, 1965, 2895
NaeI	GCCGGC	1 cut(s)	796
NcoI	CCATGG	1 cut(s)	59
NdeII	GATC	8 cut(s)	40, 55, 303, 745, 1045, 1657, 1841, 2187
NgoMIV	GCCGGC	1 cut(s)	794
NlaIV	GGNNCC	8 cut(s)	27, 57, 66, 131, 1511, 1843, 2287, 2380
NmeAIII	GCCGAG	1 cut(s)	2730
NmuCI	GTSAC	2 cut(s)	344, 698
NsiI	ATGCAT	2 cut(s)	1608, 2900
NspI	RCATGY	8 cut(s)	188, 1409, 1606, 1625, 2334, 2866, 2898, 3000
OliI	CACNNNNGTG	1 cut(s)	1694
PaeI	GCATGC	1 cut(s)	2866
PagI	TCATGA	2 cut(s)	1626, 2395
PciI	ACATGT	4 cut(s)	184, 1621, 2330, 2996
PctI	GAATGC	1 cut(s)	2635
PdiI	GCCGGC	1 cut(s)	796
PdmI	GAANNNNTTC	2 cut(s)	1764, 1857
PfeI	GAWTC	6 cut(s)	88, 424, 623, 1217, 1799, 2743
Pfl23II	CGTACG	1 cut(s)	999
PinAI	ACCGGT	1 cut(s)	190
PleI	GAGTC	7 cut(s)	67, 979, 1024, 1168, 1385, 1536, 2840
PpsI	GAGTC	7 cut(s)	67, 979, 1024, 1168, 1385, 1536, 2840
PpuMI	RGGWCCY	1 cut(s)	576
PscI	ACATGT	4 cut(s)	184, 1621, 2330, 2996
PshAI	GACNNNNGTC	1 cut(s)	612
Psp124BI	GAGCTC	1 cut(s)	680
Psp5II	RGGWCCY	1 cut(s)	576
Psp6I	CCWGG	3 cut(s)	1425, 1791, 3007
PspFI	CCCAGC	2 cut(s)	1964, 2423
PspGI	CCWGG	3 cut(s)	1425, 1791, 3007
PspLI	CGTACG	1 cut(s)	999
PspN4I	GGNNCC	8 cut(s)	27, 57, 66, 131, 1511, 1843, 2287, 2380
PspPI	GGNCC	2 cut(s)	576, 1259
PspPPI	RGGWCCY	1 cut(s)	576
PsrI	GAACNNNNNNTAC	2 cut(s)	2530, 2562
PstI	CTGCAG	4 cut(s)	319, 985, 2609, 2888
PstNI	CAGNNNCTG	1 cut(s)	1646
PsuI	RGATCY	2 cut(s)	55, 1841
PvuII	CAGCTG	1 cut(s)	1448
RsaI	GTAC	7 cut(s)	66, 189, 766, 1001, 2029, 2458, 2548
RsaNI	GTAC	7 cut(s)	65, 188, 765, 1000, 2028, 2457, 2547
RseI	CAYNNNNRTG	2 cut(s)	1694, 1710
SacI	GAGCTC	1 cut(s)	680
SacII	CCGCGG	1 cut(s)	127
SalI	GTCGAC	1 cut(s)	116
SaqAI	TTAA	3 cut(s)	2580, 2673, 2685
Sau3AI	GATC	8 cut(s)	40, 55, 303, 745, 1045, 1657, 1841, 2187
Sau96I	GGNCC	2 cut(s)	576, 1259
ScaI	AGTACT	1 cut(s)	2029
SchI	GAGTC	7 cut(s)	67, 980, 1025, 1169, 1385, 1537, 2840
ScrFI	CCNGG	3 cut(s)	1427, 1793, 3009
SduI	GDGCHC	3 cut(s)	680, 1415, 1875
SexAI	ACCWGGT	1 cut(s)	1425
SfaNI	GCATC	7 cut(s)	487, 1580, 1586, 1615, 2031, 2126, 2473
SfcI	CTRYAG	6 cut(s)	44, 315, 915, 981, 2605, 2884
Sfr303I	CCGCGG	1 cut(s)	127
SgrBI	CCGCGG	1 cut(s)	127
SinI	GGWCC	1 cut(s)	576
SmiMI	CAYNNNNRTG	2 cut(s)	1694, 1710
SmlI	CTYRAG	4 cut(s)	667, 1395, 2017, 2292
SmoI	CTYRAG	4 cut(s)	667, 1395, 2017, 2292
SphI	GCATGC	1 cut(s)	2866
SsiI	CCGC	6 cut(s)	124, 126, 414, 461, 952, 1409
SspMI	CTAG	5 cut(s)	885, 2037, 2342, 2375, 2618
SstI	GAGCTC	1 cut(s)	680
StyD4I	CCNGG	3 cut(s)	1425, 1791, 3007
StyI	CCWWGG	6 cut(s)	59, 496, 579, 1164, 2281, 2833
TaaI	ACNGT	9 cut(s)	48, 344, 614, 704, 999, 1324, 1911, 1955, 2437
TaiI	ACGT	1 cut(s)	2695
TaqI	TCGA	5 cut(s)	117, 1741, 2120, 2699, 2975
TatI	WGTACW	3 cut(s)	764, 2027, 2546
TauI	GCSGC	2 cut(s)	463, 954
TfiI	GAWTC	6 cut(s)	88, 424, 623, 1217, 1799, 2743
Tru1I	TTAA	3 cut(s)	2580, 2673, 2685
Tru9I	TTAA	3 cut(s)	2580, 2673, 2685
TscAI	CASTG	5 cut(s)	668, 784, 1420, 1914, 1960
TseFI	GTSAC	2 cut(s)	344, 698
Tsp45I	GTSAC	2 cut(s)	344, 698
TspGWI	ACGGA	1 cut(s)	887
TspRI	CASTG	5 cut(s)	668, 784, 1420, 1914, 1960
VpaK11BI	GGWCC	1 cut(s)	576
XagI	CCTNNNNNAGG	1 cut(s)	2646
XbaI	TCTAGA	1 cut(s)	2617
XceI	RCATGY	8 cut(s)	188, 1409, 1606, 1625, 2334, 2866, 2898, 3000
XmiI	GTMKAC	1 cut(s)	117
XmnI	GAANNNNTTC	2 cut(s)	1764, 1857
XspI	CTAG	5 cut(s)	885, 2037, 2342, 2375, 2618
ZrmI	AGTACT	1 cut(s)	2029
Zsp2I	ATGCAT	2 cut(s)	1608, 2900

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.