Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0002428

Physical Location & Seq

Genomic Coordinates Forward (+)

3809678 .. 3810631

Gene Structure 954 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0031900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGGGTCAGCTCATCCCACATAATCCAACTCCTGTTTCCGAAATTGTGCAAGTGAAGAATTGTGGGGTCCGTATGGTATATGAGGAAGATCTGGAGGAGCGTTGGGAAACATTACTAAAGCAGAACAATGTTGGCATTAATACCAAGCGAGGCCTTCAACACTATGATGATGATGCAGCATCTAGTAGTGCAAGTCAGGCTCATCCAAAAAGAATTAAACAACTCCACCTTGACCGCGCAGGACCCCGTGGACGCCCTTTTATTCATGACCAGAAGCATGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0003906 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006349 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010468 GO:0016787 GO:0016798 GO:0016799 GO:0019104 GO:0019222 GO:0022414 GO:0032259 GO:0032501 GO:0032502 GO:0034641 GO:0040029 GO:0043076 GO:0043078 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0044728 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0060255 GO:0061458 GO:0065007 GO:0071514 GO:0071704 GO:0090304 GO:0140097 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Perm-CXXC RRM_DME

Protein Analysis

94

Amino Acids

10.69

Weight (kDa)

7.97

Isoelectric Point (pI)

53.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002428)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04560 AT5G04560 AT5G04560
fragaria_vesca	FvH4_2g10170 FvH4_2g10170 FvH4_2g10170 FvH4_2g10170 FvH4_2g10170
malus_domestica	MD02G1245300.v1.1 MD07G1071800.v1.1 MD09G1259000.v1.1 MD09G1259100.v1.1 MD17G1253500.v1.1 MD17G1253600.v1.1
prunus_persica	Prupe.2G089400_v2.0.a1 Prupe.7G005000_v2.0.a1 Prupe.7G005000_v2.0.a1 Prupe.7G005000_v2.0.a1 Prupe.7G005000_v2.0.a1 Prupe.7G005000_v2.0.a1 Prupe.7G005000_v2.0.a1
pyrus_communis	pycom02g21110 pycom09g17380 pycom17g25620 pycom17g25630
rosa_chinensis	RchiOBHm_Chr6g0267351 RchiOBHm_Chr6g0267361
rosa_laevigata	RLG00000014013
rosa_multiflora	Rmu_sc0000746.1_g000002 Rmu_sc0019664.1_g000001
rosa_roxburghii	Rroxscaffold_7G00200830
rosa_rugosa	Rorug06G0031600 Rorug06G0031700 Rorug06G0031800 Rorug06G0031900 Rorug06G0032000
rosa_samantha	Rh6AG153500 Rh6BG153200 Rh6CG149300 Rh6DG137600
rosa_wichuraiana	Rw6G013200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	237
AciI	CCGC	1 cut(s)	235
AcyI	GRCGYC	1 cut(s)	253
AgsI	TTSAA	1 cut(s)	158
AjuI	GAANNNNNNNTTGG	2 cut(s)	19, 51
AluBI	AGCT	1 cut(s)	10
AluI	AGCT	1 cut(s)	10
AoxI	GGCC	1 cut(s)	151
ApeKI	GCWGC	1 cut(s)	176
AseI	ATTAAT	1 cut(s)	138
AspLEI	GCGC	1 cut(s)	239
AspS9I	GGNCC	2 cut(s)	67, 242
AvaII	GGWCC	2 cut(s)	67, 242
BbvI	GCAGC	1 cut(s)	188
BfaI	CTAG	1 cut(s)	183
BglII	AGATCT	1 cut(s)	88
BisI	GCNGC	1 cut(s)	177
BlsI	GCNGC	1 cut(s)	178
Bme18I	GGWCC	2 cut(s)	67, 242
BmgT120I	GGNCC	2 cut(s)	67, 242
BmiI	GGNNCC	2 cut(s)	68, 244
BmsI	GCATC	2 cut(s)	163, 188
BpmI	CTGGAG	1 cut(s)	113
BsaHI	GRCGYC	1 cut(s)	253
BsaJI	CCNNGG	1 cut(s)	247
BseDI	CCNNGG	1 cut(s)	247
BseGI	GGATG	2 cut(s)	12, 202
BseRI	GAGGAG	1 cut(s)	110
BseXI	GCAGC	1 cut(s)	188
Bsh1236I	CGCG	1 cut(s)	237
BshFI	GGCC	1 cut(s)	153
BsnI	GGCC	1 cut(s)	153
Bsp143I	GATC	1 cut(s)	88
BspACI	CCGC	1 cut(s)	235
BspANI	GGCC	1 cut(s)	153
BspFNI	CGCG	1 cut(s)	237
BspHI	TCATGA	1 cut(s)	265
BspLI	GGNNCC	2 cut(s)	68, 244
BssECI	CCNNGG	1 cut(s)	247
BssMI	GATC	1 cut(s)	88
BssNI	GRCGYC	1 cut(s)	253
BstACI	GRCGYC	1 cut(s)	253
BstDSI	CCRYGG	1 cut(s)	247
BstF5I	GGATG	2 cut(s)	12, 202
BstFNI	CGCG	1 cut(s)	237
BstHHI	GCGC	1 cut(s)	239
BstKTI	GATC	1 cut(s)	91
BstMBI	GATC	1 cut(s)	88
BstMWI	GCNNNNNNNGC	1 cut(s)	197
BstUI	CGCG	1 cut(s)	237
BstV1I	GCAGC	1 cut(s)	188
BstX2I	RGATCY	1 cut(s)	88
BstXI	CCANNNNNNTGG	1 cut(s)	278
BstYI	RGATCY	1 cut(s)	88
BsuRI	GGCC	1 cut(s)	153
BtgI	CCRYGG	1 cut(s)	247
BtsCI	GGATG	2 cut(s)	12, 202
CciI	TCATGA	1 cut(s)	265
CfoI	GCGC	1 cut(s)	239
Cfr13I	GGNCC	2 cut(s)	67, 242
CseI	GACGC	1 cut(s)	261
CviAII	CATG	2 cut(s)	266, 278
CviJI	RGCY	3 cut(s)	10, 153, 200
CviKI_1	RGCY	3 cut(s)	10, 153, 200
DpnI	GATC	1 cut(s)	90
DpnII	GATC	1 cut(s)	88
Eco147I	AGGCCT	1 cut(s)	153
Eco47I	GGWCC	2 cut(s)	67, 242
EcoO109I	RGGNCCY	1 cut(s)	242
FaeI	CATG	2 cut(s)	269, 281
FaiI	YATR	7 cut(s)	21, 74, 79, 81, 165, 267, 279
FatI	CATG	2 cut(s)	265, 277
Fnu4HI	GCNGC	1 cut(s)	177
FokI	GGATG	1 cut(s)	189
Fsp4HI	GCNGC	1 cut(s)	177
FspBI	CTAG	1 cut(s)	183
GlaI	GCGC	1 cut(s)	238
GluI	GCNGC	1 cut(s)	177
GsuI	CTGGAG	1 cut(s)	113
HaeIII	GGCC	1 cut(s)	153
HgaI	GACGC	1 cut(s)	261
HhaI	GCGC	1 cut(s)	239
Hin1I	GRCGYC	1 cut(s)	253
Hin1II	CATG	2 cut(s)	269, 281
Hin6I	GCGC	1 cut(s)	237
HinP1I	GCGC	1 cut(s)	237
Hpy166II	GTNNAC	1 cut(s)	251
Hpy188I	TCNGA	1 cut(s)	40
Hpy188III	TCNNGA	2 cut(s)	92, 266
Hpy8I	GTNNAC	1 cut(s)	251
HpyAV	CCTTC	1 cut(s)	164
HpyCH4V	TGCA	3 cut(s)	49, 176, 191
HpyF10VI	GCNNNNNNNGC	1 cut(s)	197
Hsp92I	GRCGYC	1 cut(s)	253
Hsp92II	CATG	2 cut(s)	269, 281
HspAI	GCGC	1 cut(s)	237
Kzo9I	GATC	1 cut(s)	88
LmnI	GCTCC	1 cut(s)	97
LpnPI	CCDG	4 cut(s)	45, 77, 182, 225
Lsp1109I	GCAGC	1 cut(s)	188
LweI	GCATC	2 cut(s)	163, 188
MaeI	CTAG	1 cut(s)	183
MalI	GATC	1 cut(s)	90
MboI	GATC	1 cut(s)	88
MboII	GAAGA	2 cut(s)	67, 98
MflI	RGATCY	1 cut(s)	88
MluCI	AATT	3 cut(s)	42, 58, 213
MmeI	TCCRAC	1 cut(s)	50
MnlI	CCTC	3 cut(s)	76, 88, 143
MseI	TTAA	3 cut(s)	138, 216, 283
MslI	CAYNNNNRTG	1 cut(s)	165
MvnI	CGCG	1 cut(s)	237
MwoI	GCNNNNNNNGC	1 cut(s)	197
NdeII	GATC	1 cut(s)	88
NlaIII	CATG	2 cut(s)	269, 281
NlaIV	GGNNCC	2 cut(s)	68, 244
PagI	TCATGA	1 cut(s)	265
PceI	AGGCCT	1 cut(s)	153
PkrI	GCNGC	1 cut(s)	178
PpuMI	RGGWCCY	1 cut(s)	242
PshBI	ATTAAT	1 cut(s)	138
Psp5II	RGGWCCY	1 cut(s)	242
PspN4I	GGNNCC	2 cut(s)	68, 244
PspPI	GGNCC	2 cut(s)	67, 242
PspPPI	RGGWCCY	1 cut(s)	242
PsuI	RGATCY	1 cut(s)	88
RseI	CAYNNNNRTG	1 cut(s)	165
SaqAI	TTAA	3 cut(s)	138, 216, 283
SatI	GCNGC	1 cut(s)	177
Sau3AI	GATC	1 cut(s)	88
Sau96I	GGNCC	2 cut(s)	67, 242
SetI	ASST	2 cut(s)	12, 231
SfaNI	GCATC	2 cut(s)	163, 188
SinI	GGWCC	2 cut(s)	67, 242
SmiMI	CAYNNNNRTG	1 cut(s)	165
Sse9I	AATT	3 cut(s)	42, 58, 213
SseBI	AGGCCT	1 cut(s)	153
SsiI	CCGC	1 cut(s)	235
SspMI	CTAG	1 cut(s)	183
StuI	AGGCCT	1 cut(s)	153
TasI	AATT	3 cut(s)	42, 58, 213
Tru1I	TTAA	3 cut(s)	138, 216, 283
Tru9I	TTAA	3 cut(s)	138, 216, 283
TseI	GCWGC	1 cut(s)	176
TspDTI	ATGAA	1 cut(s)	254
TspGWI	ACGGA	1 cut(s)	59
VpaK11BI	GGWCC	2 cut(s)	67, 242
VspI	ATTAAT	1 cut(s)	138
XspI	CTAG	1 cut(s)	183

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.