Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0002428

Physical Location & Seq

Genomic Coordinates Forward (+)

33154823 .. 33162525

Gene Structure 7703 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1259100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3129 bp

ATGAGGACCCATTACAAAGGAGATGGTGCAGTAGTTCCCTATGAAAGATTTATCAAGAAACGTAAGCCACGGCCCAAAGTAGAGCTTGACCCGGAAACAAATAGGATATGGAATCTCTTGATGGGAATGGAAGGAAGTGGAGGCATTGAAGGAAATGATATGGAAAAGGAGAAGTATTGGGAAGAGGAAAGAAAGGTTTTCCAAGGCCGAGTTGAATCATTCATTGCACGCATGCATCTTGTTCAAGGAGACAGACGTTTTTCAAAATGGAAAGGATCAGTTGTTGACTCAGTGATTGGAGTTTTCCTTACTCAGAATGTTTCAGACCATCTATCAAGCTCTGCCTTTATGTCTTTGGCTGCACGATTTCCTCTTAAGTCAAGCAATCACCAAGCTCAACCCAAGGTTAGGACAAATATATTGGTTAAAGAACCAGCAGTTCACATGACAAGTCCAGATGATGCCACCAAATGGCATGAAGACAGGTCAAGTCAACCAATCTATCACCCGATTTCTATGACACTCCATGAATCTGAAGCAAACCAGAAAGACAGTGAGACCTCAGGGACAGAAAGGAACTTAGTGGATGCACATAGTCAATGTTTGGAGGAAGAATTTGTATCTTCTCAAGATTCTTTTGAATCCTCAGTCACTCAAGGCGCTTTAGGAATCAAATCATGCTCAGGCTCCAACTCAGAAACAGAAGATCCTGGCACTGGGTGCCAACCCAAGGTTCATGTCTCCATTTCAACATGTCAACAGGTGGCGAAGGGGACCAAGTTTCAAGACTTTTACAATCAAGTAAATGGAAGTTCAGTGTCATATGATGGATCCAAGAATGGGCATTTTAAATATGCACAGCTAAAGAGAAAATCAGATAGAATTGATCATCTCAATGGCACTTCCTTCAAGGATCCAATCAATCTTGATGACGAAAAAATGCAAGTACCAGTTGCTCTTTCCAGCAACAATCAGTTTCACATGAACCCAGATTCTGGAAAACCAGAGTCGTGGAAATTTGGAAATTTTAGTGAGGAAAGCATATCCTCTTGGCCTACAAGTGCTTCCAGGTTCAATATTGAACAGGAAGAAAATTGCAAGAGCTTAAGAACCGAGGAACTGTCAGGAAGTGTCGTTAATTCCTCCATGCAACAGAATACTTTGTGGAGTTCTCAAGGGACACCAACAAAGGACCCGTATCCATCTTTCAGAGAGCACTCGACAGACCAGCAAAGTAATTCTCAACCAAGGTCAAGCACAGGATATAACCAACCTTCCCTCTACAGTCACCAATTCGAGGGGAACCCAACCTTCCAATCTGAAAATACATCAGTCACAGAGCCTGTAAAACATACTGAACCATTTCTGCCAAACAAGAGTGATAGCATGCAGCATGTCCAAAATGAGAAATTAAATTCTTATGGTCAGTCAAATAGTGGGACAAGCACAAAACCTCCAAAAGGAAGAAAAGGAAAGGCTGAGAGCGAGAAAAAGAATGCAGTTGACTGGGACATTTTGAGAAAGCAGGCGCAAGCCAATGGTAGGAAAACAGAAAGAAAAAGAGAAGCAATGGACTCGCTGGACTATGAAGCACTCATAAATGCTAATGTCAAAGAAATATCTGACGCAATCAAGGAGCGAGGGATGAATAACTTGCTAGCACAACGAATGCAGGAATTCCTAAAGCGACTGGTTAGAGAACATGAAAGCATCGATCTGGAATGGTTAAGAGATGTTCCCCCTGATAAAGCAAAGGATTATCTATTAAGCATACGAGGATTGGGCTTGAAAAGTGTGGAGTGCATCCGGCTTTTAACACTTCACCACCTTGCTTTCCCGGTTGACACAAATGTTGGAAGGATAGCAGTAAGACTGGGATGGGTGCCCCTCCAACCATTACCTGAATCACTGCAGTTACACCTCTTAGAACTGTACCCAATGCTGGAGACAGTTCAAAAGTATCTATGGCCAAGATTATGCAAACTTGATCAACTAACCCTTTACGAGCTGCATTACCAGATGATTACATTTGGAAAGGTTTTTTGCACAAAGAGTAAACCAAATTGCAATGCATGTCCAATGAGAGGAGAATGCCGACACTTCGCAAGTGCTTTCGCAAGTGCAAGACTTGCCCTGCCAGGGCCAGAAGAGAAGAGCATTGTCAGTTCAAGTGTCTCCAGGGAAGCCGAGATAAATCCTGAAATAGCTGTCACTCCTATGTCACTGCCTCTGCCTGAGAACAACTCACTCCAGATAGCAAGTACTGTAATTAAAGAGTGTGAACCAATCATTGAAGAGCCAGCAACGCCAGAACAAGAGTTGACCGAGCTATCAGAAAGTGAACTTGAGGACTTTTTCTGTGAGGACCCTGATGAGATTCCTACGATCAAACTCAACATGGAAGAGTTCACAGCTACATTACAAAACTATATGCAAGAGAAGATGGAGCTCCAAGAAGGTGACATGTCCAAGGCCTTAGTTGCCTTGAATCCAGAAGCTACTTCTATCCCTACACCCAAGCTGAAGAATGTCAGTAGACTACGAACAGAGCACCAAGTGTATGAGCTACCTGATTCACATCCACTCTTGGAAGGGATGGATAGACGGGAACCAGATGATCCAAGTCCATACCTTCTAGCTATATGGACACCAGGTGAAACTGCAAATTCAATTCAACAACCAGAAAGCAGGTGCAGCTCCCAAGATCAAAACAGATTGTGCAATGAGAAGACATGCTTTTCATGCAATAGTATAAGAGAAGAAAACTCGCAAATAGTCAGAGGGACGATTTTGATACCTTGTAGAACAGCAATGAGAGGAAGCTTTCCCCTCAATGGAACCTACTTTCAAGTTAATGAGATGTTCGCAGATCATGAATCTAGTCATAACCCAATTGATGTTCCAAGGGGGTGGATATGGAATTTGCCAAGACGGACTGTATACTTTGGAACTTCGGTATCAACAATATTCAAAGGTCTATCAACAGAGGGAATTCAATACTGCTTTTGGAGAGGATATGTTTGTGTGAGGGGATTCGAAAGGAAAACAAGAGCACCACGGCCCTTAATGGCCAGATTGCACTTCCCTGCGAGTAAGATGACTAAGACAATAAATGAAGGGAAGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0003906 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006349 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010468 GO:0016787 GO:0016798 GO:0016799 GO:0019104 GO:0019222 GO:0022414 GO:0032259 GO:0032501 GO:0032502 GO:0034641 GO:0040029 GO:0043076 GO:0043078 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0044728 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0060255 GO:0061458 GO:0065007 GO:0071514 GO:0071704 GO:0090304 GO:0140097 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Perm-CXXC RRM_DME

Protein Analysis

1043

Amino Acids

118.01

Weight (kDa)

6.07

Isoelectric Point (pI)

46.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Perm-CXXC	PF15629	894 - 925	2.8e-14	Permuted single zf-CXXC unit
RRM_DME	PF15628	928 - 1028	1.7e-53	RRM in Demeter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002428)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04560 AT5G04560 AT5G04560
fragaria_vesca	FvH4_2g10170 FvH4_2g10170 FvH4_2g10170 FvH4_2g10170 FvH4_2g10170
malus_domestica	MD02G1245300.v1.1 MD07G1071800.v1.1 MD09G1259000.v1.1 MD09G1259100.v1.1 MD17G1253500.v1.1 MD17G1253600.v1.1
prunus_persica	Prupe.2G089400_v2.0.a1 Prupe.7G005000_v2.0.a1 Prupe.7G005000_v2.0.a1 Prupe.7G005000_v2.0.a1 Prupe.7G005000_v2.0.a1 Prupe.7G005000_v2.0.a1 Prupe.7G005000_v2.0.a1
pyrus_communis	pycom02g21110 pycom09g17380 pycom17g25620 pycom17g25630
rosa_chinensis	RchiOBHm_Chr6g0267351 RchiOBHm_Chr6g0267361
rosa_laevigata	RLG00000014013
rosa_multiflora	Rmu_sc0000746.1_g000002 Rmu_sc0019664.1_g000001
rosa_roxburghii	Rroxscaffold_7G00200830
rosa_rugosa	Rorug06G0031600 Rorug06G0031700 Rorug06G0031800 Rorug06G0031900 Rorug06G0032000
rosa_samantha	Rh6AG153500 Rh6BG153200 Rh6CG149300 Rh6DG137600
rosa_wichuraiana	Rw6G013200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2679
Acc36I	ACCTGC	1 cut(s)	2679
AccB1I	GGYRCC	2 cut(s)	720, 1882
AccB7I	CCANNNNNTGG	2 cut(s)	471, 995
AccI	GTMKAC	2 cut(s)	2536, 2940
AclWI	GGATC	7 cut(s)	283, 701, 825, 838, 908, 921, 2612
AcoI	YGGCCR	2 cut(s)	1967, 3069
AcsI	RAATTY	8 cut(s)	614, 1016, 1024, 1414, 1676, 2665, 2920, 2991
AcuI	CTGAAG	2 cut(s)	555, 2543
AdeI	CACNNNGTG	3 cut(s)	720, 2557, 2654
AfaI	GTAC	3 cut(s)	948, 1934, 2263
AflII	CTTAAG	2 cut(s)	374, 1105
AflIII	ACRYGT	2 cut(s)	752, 2463
AjnI	CCWGG	5 cut(s)	709, 1067, 2137, 2177, 2650
AjuI	GAANNNNNNNTTGG	2 cut(s)	717, 749
Alw21I	GWGCWC	4 cut(s)	1218, 2451, 2553, 3055
Alw26I	GTCTC	5 cut(s)	243, 551, 745, 1940, 2179
AlwI	GGATC	7 cut(s)	283, 701, 825, 838, 908, 921, 2612
AlwNI	CAGNNNCTG	2 cut(s)	995, 1343
AoxI	GGCC	8 cut(s)	71, 205, 1052, 1967, 2141, 2472, 3059, 3069
ApeKI	GCWGC	4 cut(s)	359, 1390, 2008, 2694
ApoI	RAATTY	8 cut(s)	614, 1016, 1024, 1414, 1676, 2665, 2920, 2991
Asp700I	GAANNNNTTC	1 cut(s)	1362
AspLEI	GCGC	2 cut(s)	662, 1531
AspS9I	GGNCC	7 cut(s)	6, 72, 774, 1192, 2141, 2365, 3060
AsuC2I	CCSGG	2 cut(s)	92, 1838
AsuHPI	GGTGA	6 cut(s)	380, 497, 1280, 1814, 2471, 2666
AsuII	TTCGAA	1 cut(s)	3036
AsuNHI	GCTAGC	1 cut(s)	1657
AvaII	GGWCC	4 cut(s)	6, 774, 1192, 2365
AxyI	CCTNAGG	1 cut(s)	562
BaeGI	GKGCMC	1 cut(s)	1887
BaeI	ACNNNNGTAYC	2 cut(s)	2940, 2973
BalI	TGGCCA	2 cut(s)	1969, 3071
BamHI	GGATCC	2 cut(s)	830, 913
BanI	GGYRCC	2 cut(s)	720, 1882
BanII	GRGCYC	1 cut(s)	2451
BbsI	GAAGAC	2 cut(s)	486, 2735
Bbv12I	GWGCWC	4 cut(s)	1218, 2451, 2553, 3055
BbvI	GCAGC	4 cut(s)	346, 1402, 1995, 2706
BccI	CCATC	8 cut(s)	17, 115, 336, 821, 1210, 1872, 2437, 2590
BceAI	ACGGC	2 cut(s)	86, 3074
BcgI	CGANNNNNNTGC	2 cut(s)	1557, 1591
BciT130I	CCWGG	5 cut(s)	711, 1069, 2139, 2179, 2652
BciVI	GTATCC	1 cut(s)	1209
BclI	TGATCA	2 cut(s)	886, 1987
BcnI	CCSGG	2 cut(s)	92, 1838
BcoDI	GTCTC	5 cut(s)	243, 551, 745, 1940, 2179
BfaI	CTAG	3 cut(s)	1658, 2636, 2880
BfmI	CTRYAG	2 cut(s)	1282, 1910
BfoI	RGCGCY	1 cut(s)	663
BfrI	CTTAAG	2 cut(s)	374, 1105
BfuAI	ACCTGC	1 cut(s)	2679
BfuI	GTATCC	1 cut(s)	1209
BisI	GCNGC	4 cut(s)	360, 1391, 2009, 2695
BlsI	GCNGC	4 cut(s)	361, 1392, 2010, 2696
BmcAI	AGTACT	1 cut(s)	2263
Bme1390I	CCNGG	7 cut(s)	92, 711, 1069, 1838, 2139, 2179, 2652
Bme18I	GGWCC	4 cut(s)	6, 774, 1192, 2365
BmgT120I	GGNCC	7 cut(s)	6, 72, 774, 1192, 2141, 2365, 3060
BmrFI	CCNGG	7 cut(s)	92, 711, 1069, 1838, 2139, 2179, 2652
BmrI	ACTGGG	3 cut(s)	726, 1516, 1883
BmsI	GCATC	5 cut(s)	244, 451, 577, 1719, 1812
BmtI	GCTAGC	1 cut(s)	1661
BmuI	ACTGGG	3 cut(s)	726, 1516, 1883
BpiI	GAAGAC	2 cut(s)	486, 2735
BplI	GAGNNNNNCTC	2 cut(s)	2228, 2260
BpmI	CTGGAG	3 cut(s)	1964, 2161, 2234
Bpu10I	CCTNAGC	1 cut(s)	682
Bpu14I	TTCGAA	1 cut(s)	3036
BpuEI	CTTGAG	4 cut(s)	612, 639, 1158, 2366
BpuMI	CCSGG	2 cut(s)	92, 1838
Bsa29I	ATCGAT	1 cut(s)	1713
BsaBI	GATNNNNATC	1 cut(s)	2577
BsaI	GGTCTC	1 cut(s)	551
BsaXI	ACNNNNNCTCC	2 cut(s)	1438, 1468
Bse1I	ACTGG	5 cut(s)	721, 950, 1511, 1695, 1878
Bse21I	CCTNAGG	1 cut(s)	562
Bse3DI	GCAATG	5 cut(s)	222, 1575, 2074, 2728, 2817
Bse8I	GATNNNNATC	1 cut(s)	2577
BseBI	CCWGG	5 cut(s)	711, 1069, 2139, 2179, 2652
BseCI	ATCGAT	1 cut(s)	1713
BseGI	GGATG	6 cut(s)	592, 1650, 1803, 1883, 2578, 2601
BseJI	GATNNNNATC	1 cut(s)	2577
BseMI	GCAATG	5 cut(s)	222, 1575, 2074, 2728, 2817
BseMII	CTCAG	8 cut(s)	303, 326, 576, 660, 696, 708, 1470, 2226
BseNI	ACTGG	5 cut(s)	721, 950, 1511, 1695, 1878
BseRI	GAGGAG	1 cut(s)	2100
BseSI	GKGCMC	1 cut(s)	1887
BseXI	GCAGC	4 cut(s)	346, 1402, 1995, 2706
BsgI	GTGCAG	3 cut(s)	48, 345, 2713
BshFI	GGCC	8 cut(s)	73, 207, 1054, 1969, 2143, 2474, 3061, 3071
BshNI	GGYRCC	2 cut(s)	720, 1882
BshVI	ATCGAT	1 cut(s)	1713
BsiHKAI	GWGCWC	4 cut(s)	1218, 2451, 2553, 3055
BsiSI	CCGG	3 cut(s)	92, 1807, 1838
BslFI	GGGAC	6 cut(s)	580, 787, 1192, 1453, 1523, 2797
BsmAI	GTCTC	5 cut(s)	243, 551, 745, 1940, 2179
BsmFI	GGGAC	6 cut(s)	580, 787, 1192, 1453, 1523, 2797
BsmI	GAATGC	3 cut(s)	1501, 1674, 2096
BsnI	GGCC	8 cut(s)	73, 207, 1054, 1969, 2143, 2474, 3061, 3071
Bso31I	GGTCTC	1 cut(s)	551
Bsp119I	TTCGAA	1 cut(s)	3036
Bsp1286I	GDGCHC	5 cut(s)	1218, 1887, 2451, 2553, 3055
BspANI	GGCC	8 cut(s)	73, 207, 1054, 1969, 2143, 2474, 3061, 3071
BspCNI	CTCAG	8 cut(s)	302, 325, 575, 659, 695, 707, 1471, 2227
BspDI	ATCGAT	1 cut(s)	1713
BspHI	TCATGA	1 cut(s)	2872
BspMAI	CTGCAG	1 cut(s)	1914
BspMI	ACCTGC	1 cut(s)	2679
BspOI	GCTAGC	1 cut(s)	1661
BspPI	GGATC	7 cut(s)	283, 701, 825, 838, 908, 921, 2612
BspQI	GCTCTTC	2 cut(s)	2147, 2289
BspT104I	TTCGAA	1 cut(s)	3036
BspT107I	GGYRCC	2 cut(s)	720, 1882
BspTI	CTTAAG	2 cut(s)	374, 1105
BspTNI	GGTCTC	1 cut(s)	551
BsrDI	GCAATG	5 cut(s)	222, 1575, 2074, 2728, 2817
BsrI	ACTGG	5 cut(s)	721, 950, 1511, 1695, 1878
BssNAI	GTATAC	1 cut(s)	2941
BssT1I	CCWWGG	6 cut(s)	202, 402, 729, 1247, 2469, 2903
Bst1107I	GTATAC	1 cut(s)	2941
Bst2UI	CCWGG	5 cut(s)	711, 1069, 2139, 2179, 2652
Bst4CI	ACNGT	7 cut(s)	554, 1122, 1286, 1932, 1951, 2266, 2938
Bst6I	CTCTTC	5 cut(s)	177, 2142, 2147, 2289, 2397
BstAFI	CTTAAG	2 cut(s)	374, 1105
BstAPI	GCANNNNNTGC	2 cut(s)	720, 2129
BstBI	TTCGAA	1 cut(s)	3036
BstC8I	GCNNGC	7 cut(s)	229, 233, 1388, 1527, 1533, 1659, 2301
BstDSI	CCRYGG	2 cut(s)	68, 3056
BstENI	CCTNNNNNAGG	1 cut(s)	1458
BstF5I	GGATG	6 cut(s)	592, 1650, 1803, 1883, 2578, 2601
BstH2I	RGCGCY	1 cut(s)	663
BstHHI	GCGC	2 cut(s)	662, 1531
BstMAI	GTCTC	5 cut(s)	243, 551, 745, 1940, 2179
BstMWI	GCNNNNNNNGC	6 cut(s)	720, 2129, 2305, 2480, 2694, 2742
BstNI	CCWGG	5 cut(s)	711, 1069, 2139, 2179, 2652
BstNSI	RCATGY	7 cut(s)	235, 756, 1390, 1397, 2076, 2467, 2736
BstSCI	CCNGG	7 cut(s)	90, 709, 1067, 1836, 2137, 2177, 2650
BstSFI	CTRYAG	2 cut(s)	1282, 1910
BstSLI	GKGCMC	1 cut(s)	1887
BstV1I	GCAGC	4 cut(s)	346, 1402, 1995, 2706
BstV2I	GAAGAC	2 cut(s)	486, 2735
BstX2I	RGATCY	3 cut(s)	706, 830, 913
BstXI	CCANNNNNNTGG	2 cut(s)	1011, 2910
BstYI	RGATCY	3 cut(s)	706, 830, 913
BstZ17I	GTATAC	1 cut(s)	2941
Bsu15I	ATCGAT	1 cut(s)	1713
Bsu36I	CCTNAGG	1 cut(s)	562
BsuI	GTATCC	1 cut(s)	1209
BsuRI	GGCC	8 cut(s)	73, 207, 1054, 1969, 2143, 2474, 3061, 3071
BsuTUI	ATCGAT	1 cut(s)	1713
BtgI	CCRYGG	2 cut(s)	68, 3056
BtsCI	GGATG	6 cut(s)	592, 1650, 1803, 1883, 2578, 2601
BtsI	GCAGTG	2 cut(s)	1907, 2222
BtsIMutI	CAGTG	6 cut(s)	297, 559, 714, 822, 1907, 2222
BveI	ACCTGC	1 cut(s)	2679
Cac8I	GCNNGC	7 cut(s)	229, 233, 1388, 1527, 1533, 1659, 2301
CaiI	CAGNNNCTG	2 cut(s)	995, 1343
CciI	TCATGA	1 cut(s)	2872
CfoI	GCGC	2 cut(s)	662, 1531
Cfr13I	GGNCC	7 cut(s)	6, 72, 774, 1192, 2141, 2365, 3060
ClaI	ATCGAT	1 cut(s)	1713
CseI	GACGC	1 cut(s)	1634
CsiI	ACCWGGT	1 cut(s)	2650
Csp6I	GTAC	3 cut(s)	947, 1933, 2262
CviQI	GTAC	3 cut(s)	947, 1933, 2262
DraI	TTTAAA	1 cut(s)	850
DraIII	CACNNNGTG	3 cut(s)	720, 2557, 2654
EaeI	YGGCCR	2 cut(s)	1967, 3069
Eam1104I	CTCTTC	5 cut(s)	177, 2142, 2147, 2289, 2397
EarI	CTCTTC	5 cut(s)	177, 2142, 2147, 2289, 2397
Ecl136II	GAGCTC	1 cut(s)	2449
Eco130I	CCWWGG	6 cut(s)	202, 402, 729, 1247, 2469, 2903
Eco147I	AGGCCT	1 cut(s)	2474
Eco24I	GRGCYC	1 cut(s)	2451
Eco31I	GGTCTC	1 cut(s)	551
Eco47I	GGWCC	4 cut(s)	6, 774, 1192, 2365
Eco53kI	GAGCTC	1 cut(s)	2449
Eco57I	CTGAAG	2 cut(s)	555, 2543
Eco81I	CCTNAGG	1 cut(s)	562
EcoICRI	GAGCTC	1 cut(s)	2449
EcoNI	CCTNNNNNAGG	1 cut(s)	1458
EcoO109I	RGGNCCY	3 cut(s)	6, 1192, 2365
EcoRI	GAATTC	2 cut(s)	1676, 2991
EcoRII	CCWGG	5 cut(s)	709, 1067, 2137, 2177, 2650
EcoT14I	CCWWGG	6 cut(s)	202, 402, 729, 1247, 2469, 2903
EcoT22I	ATGCAT	2 cut(s)	237, 2074
EcoT38I	GRGCYC	1 cut(s)	2451
ErhI	CCWWGG	6 cut(s)	202, 402, 729, 1247, 2469, 2903
FalI	AAGNNNNNCTT	4 cut(s)	69, 101, 2720, 2752
FaqI	GGGAC	6 cut(s)	580, 787, 1192, 1453, 1523, 2797
FauNDI	CATATG	1 cut(s)	823
FbaI	TGATCA	2 cut(s)	886, 1987
FblI	GTMKAC	2 cut(s)	2536, 2940
Fnu4HI	GCNGC	4 cut(s)	360, 1391, 2009, 2695
FokI	GGATG	6 cut(s)	599, 1657, 1790, 1890, 2565, 2608
FriOI	GRGCYC	1 cut(s)	2451
Fsp4HI	GCNGC	4 cut(s)	360, 1391, 2009, 2695
FspBI	CTAG	3 cut(s)	1658, 2636, 2880
GlaI	GCGC	2 cut(s)	661, 1530
GluI	GCNGC	4 cut(s)	360, 1391, 2009, 2695
GsuI	CTGGAG	3 cut(s)	1964, 2161, 2234
HaeII	RGCGCY	1 cut(s)	663
HaeIII	GGCC	8 cut(s)	73, 207, 1054, 1969, 2143, 2474, 3061, 3071
HapII	CCGG	3 cut(s)	92, 1807, 1838
HgaI	GACGC	1 cut(s)	1634
HhaI	GCGC	2 cut(s)	662, 1531
Hin6I	GCGC	2 cut(s)	660, 1529
HinP1I	GCGC	2 cut(s)	660, 1529
HincII	GTYRAC	6 cut(s)	286, 494, 758, 1504, 1843, 2322
HindII	GTYRAC	6 cut(s)	286, 494, 758, 1504, 1843, 2322
HindIII	AAGCTT	1 cut(s)	2821
HpaII	CCGG	3 cut(s)	92, 1807, 1838
HphI	GGTGA	6 cut(s)	380, 497, 1280, 1814, 2471, 2666
HpyCH4III	ACNGT	7 cut(s)	554, 1122, 1286, 1932, 1951, 2266, 2938
HpyCH4IV	ACGT	2 cut(s)	61, 256
HpyF10VI	GCNNNNNNNGC	6 cut(s)	720, 2129, 2305, 2480, 2694, 2742
HpySE526I	ACGT	2 cut(s)	61, 256
HspAI	GCGC	2 cut(s)	660, 1529
Ksp22I	TGATCA	2 cut(s)	886, 1987
LguI	GCTCTTC	2 cut(s)	2147, 2289
LmnI	GCTCC	5 cut(s)	692, 1636, 2446, 2454, 2702
Lsp1109I	GCAGC	4 cut(s)	346, 1402, 1995, 2706
LweI	GCATC	5 cut(s)	244, 451, 577, 1719, 1812
MabI	ACCWGGT	1 cut(s)	2650
MaeI	CTAG	3 cut(s)	1658, 2636, 2880
MaeII	ACGT	2 cut(s)	61, 256
MaeIII	GTNAC	7 cut(s)	649, 1286, 1333, 1914, 2209, 2220, 2459
MfeI	CAATTG	1 cut(s)	2892
MflI	RGATCY	3 cut(s)	706, 830, 913
MhlI	GDGCHC	5 cut(s)	1218, 1887, 2451, 2553, 3055
MlsI	TGGCCA	2 cut(s)	1969, 3071
MluNI	TGGCCA	2 cut(s)	1969, 3071
MlyI	GAGTC	3 cut(s)	281, 1016, 1568
MmeI	TCCRAC	3 cut(s)	714, 1834, 1915
Mox20I	TGGCCA	2 cut(s)	1969, 3071
Mph1103I	ATGCAT	2 cut(s)	237, 2074
MroXI	GAANNNNTTC	1 cut(s)	1362
MscI	TGGCCA	2 cut(s)	1969, 3071
MslI	CAYNNNNRTG	2 cut(s)	894, 2216
Msp20I	TGGCCA	2 cut(s)	1969, 3071
MspCI	CTTAAG	2 cut(s)	374, 1105
MspI	CCGG	3 cut(s)	92, 1807, 1838
MspR9I	CCNGG	7 cut(s)	92, 711, 1069, 1838, 2139, 2179, 2652
MunI	CAATTG	1 cut(s)	2892
Mva1269I	GAATGC	3 cut(s)	1501, 1674, 2096
MvaI	CCWGG	5 cut(s)	711, 1069, 2139, 2179, 2652
MwoI	GCNNNNNNNGC	6 cut(s)	720, 2129, 2305, 2480, 2694, 2742
NciI	CCSGG	2 cut(s)	92, 1838
NdeI	CATATG	1 cut(s)	823
NheI	GCTAGC	1 cut(s)	1657
NmeAIII	GCCGAG	2 cut(s)	233, 2212
NmuCI	GTSAC	6 cut(s)	649, 1286, 1333, 2209, 2220, 2459
NsiI	ATGCAT	2 cut(s)	237, 2074
NspI	RCATGY	7 cut(s)	235, 756, 1390, 1397, 2076, 2467, 2736
NspV	TTCGAA	1 cut(s)	3036
PaeI	GCATGC	2 cut(s)	235, 1390
PagI	TCATGA	1 cut(s)	2872
PaqCI	CACCTGC	1 cut(s)	2679
PceI	AGGCCT	1 cut(s)	2474
PciI	ACATGT	2 cut(s)	752, 2463
PciSI	GCTCTTC	2 cut(s)	2147, 2289
PctI	GAATGC	3 cut(s)	1501, 1674, 2096
PdmI	GAANNNNTTC	1 cut(s)	1362
PflMI	CCANNNNNTGG	2 cut(s)	471, 995
PkrI	GCNGC	4 cut(s)	361, 1392, 2010, 2696
PleI	GAGTC	3 cut(s)	281, 1015, 1568
PpsI	GAGTC	3 cut(s)	281, 1015, 1568
PpuMI	RGGWCCY	3 cut(s)	6, 1192, 2365
PscI	ACATGT	2 cut(s)	752, 2463
Psp124BI	GAGCTC	1 cut(s)	2451
Psp5II	RGGWCCY	3 cut(s)	6, 1192, 2365
Psp6I	CCWGG	5 cut(s)	709, 1067, 2137, 2177, 2650
PspGI	CCWGG	5 cut(s)	709, 1067, 2137, 2177, 2650
PspPI	GGNCC	7 cut(s)	6, 72, 774, 1192, 2141, 2365, 3060
PspPPI	RGGWCCY	3 cut(s)	6, 1192, 2365
PstI	CTGCAG	1 cut(s)	1914
PstNI	CAGNNNCTG	2 cut(s)	995, 1343
PsuI	RGATCY	3 cut(s)	706, 830, 913
RsaI	GTAC	3 cut(s)	948, 1934, 2263
RsaNI	GTAC	3 cut(s)	947, 1933, 2262
RseI	CAYNNNNRTG	2 cut(s)	894, 2216
SacI	GAGCTC	1 cut(s)	2451
SapI	GCTCTTC	2 cut(s)	2147, 2289
SatI	GCNGC	4 cut(s)	360, 1391, 2009, 2695
Sau96I	GGNCC	7 cut(s)	6, 72, 774, 1192, 2141, 2365, 3060
ScaI	AGTACT	1 cut(s)	2263
SchI	GAGTC	3 cut(s)	281, 1016, 1568
ScrFI	CCNGG	7 cut(s)	92, 711, 1069, 1838, 2139, 2179, 2652
SduI	GDGCHC	5 cut(s)	1218, 1887, 2451, 2553, 3055
SexAI	ACCWGGT	1 cut(s)	2650
SfaNI	GCATC	5 cut(s)	244, 451, 577, 1719, 1812
SfcI	CTRYAG	2 cut(s)	1282, 1910
SfuI	TTCGAA	1 cut(s)	3036
SinI	GGWCC	4 cut(s)	6, 774, 1192, 2365
SmiMI	CAYNNNNRTG	2 cut(s)	894, 2216
SmlI	CTYRAG	6 cut(s)	374, 627, 654, 1105, 1173, 2345
SmoI	CTYRAG	6 cut(s)	374, 627, 654, 1105, 1173, 2345
SphI	GCATGC	2 cut(s)	235, 1390
SseBI	AGGCCT	1 cut(s)	2474
SspI	AATATT	2 cut(s)	1078, 2967
SspMI	CTAG	3 cut(s)	1658, 2636, 2880
SstI	GAGCTC	1 cut(s)	2451
StuI	AGGCCT	1 cut(s)	2474
StyD4I	CCNGG	7 cut(s)	90, 709, 1067, 1836, 2137, 2177, 2650
StyI	CCWWGG	6 cut(s)	202, 402, 729, 1247, 2469, 2903
TaaI	ACNGT	7 cut(s)	554, 1122, 1286, 1932, 1951, 2266, 2938
TaiI	ACGT	2 cut(s)	64, 259
TaqI	TCGA	4 cut(s)	1220, 1296, 1713, 3036
TaqII	GACCGA	1 cut(s)	2339
TatI	WGTACW	1 cut(s)	2261
TscAI	CASTG	6 cut(s)	297, 559, 721, 822, 1914, 2229
TseFI	GTSAC	6 cut(s)	649, 1286, 1333, 2209, 2220, 2459
TseI	GCWGC	4 cut(s)	359, 1390, 2008, 2694
Tsp45I	GTSAC	6 cut(s)	649, 1286, 1333, 2209, 2220, 2459
TspGWI	ACGGA	1 cut(s)	2947
TspRI	CASTG	6 cut(s)	297, 559, 721, 822, 1914, 2229
Van91I	CCANNNNNTGG	2 cut(s)	471, 995
Vha464I	CTTAAG	2 cut(s)	374, 1105
VpaK11BI	GGWCC	4 cut(s)	6, 774, 1192, 2365
XagI	CCTNNNNNAGG	1 cut(s)	1458
XapI	RAATTY	8 cut(s)	614, 1016, 1024, 1414, 1676, 2665, 2920, 2991
XceI	RCATGY	7 cut(s)	235, 756, 1390, 1397, 2076, 2467, 2736
XmiI	GTMKAC	2 cut(s)	2536, 2940
XmnI	GAANNNNTTC	1 cut(s)	1362
XspI	CTAG	3 cut(s)	1658, 2636, 2880
ZrmI	AGTACT	1 cut(s)	2263
Zsp2I	ATGCAT	2 cut(s)	237, 2074

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.