Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0002428

Physical Location & Seq

Genomic Coordinates Reverse (-)

48238639 .. 48248711

Gene Structure 10073 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00200830.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2412 bp

ATGGGGGAGCTAAAGACAAGATTAGACAGAATAGATGATTTCAGTGGCACTTGTTCAGTCACAAATCCAATCAATCTTGACGACCGAAAAATGCGACCATCAATTGCTCCTTCCAGCAGCAATCATTTACAGATGTACCTAAATTCTGGAGAACCAGAGCCATTTGGATTGGAAAGTTTCAGTGAAGAAAGCATATCTTCTTGTTGGCCTTCAACTGCTTCCAAGGTCAATGTGCAAAAAGATGACTATTACAAGAGCTTCAGAAATAAGGAATTGTCAGGAACTGTTGTTAGTTCATCTGTCGAACAAAGTACTTTGTGGAGCTCTCAAGAACCTGCCACAAAGGATCCATATGGTGCTCTCAGACAGCACTCAAGTGACCAGCAGAATTATTGTCAGCCAAGACCCAGCAATGAATATTATCAACCTTCCCGCGAAAGTCATCAACATGAGGGGAACCAGACTTTCCAATTAGAGAAAAATTCATTCATAGAGCCTGTAAAACATAGTGAACAACTTCCAGGAAAGAAGAATGATGGCATGCAGCAAGTCCCAAATGTCAATCAGCTGAATAAGAAATCTTCAAATGCAGGAGATAGTATCTCTACAGTGAACAATGGATCGGTTAATTCAAATACAAAGGAGCAATCTTCCCATGAACGGTCACAGAATGAGATTGTTACTAATATTTCAAAAGGAAGGAAGAAAAAGTCAGAAAGTGACAAAAAGAACGCAGTTGACTGGGATAATTTAAGAACGCAGGTGCTGGCCGATGGTAGGAAAAAGGAAAAAAACAAAGATGCAATGGACTCGCTTGACTATGAAGCACTTATAAATGCTAATGTTAAAGAGATTTCTAATGCAATCAGGGAGCGAGGGATGAACAACATGCTAGCTGAGCGAATTCAGGAATTCCTAAATCGAGTGGTTAAAGACCATGGAAGCATCGATTTGGAATGGTTGAGAGATGTGCCCCCTGATAAAGCAAAGGATTATCTATTAAGTATTCGAGGTTTGGGCTTGAAAAGTGTGGAATGTGTTCGTCTTTTGACACTTCACCATCTTGCTTTCCCGGTTGATACAAATGTTGGGAGAATAGCAGTACGACTTGGATGGGTCCCCCTCCAACCATTACCTGAATCACTCCAGCTCCATCTCCTAGAACTGTACCCGATGCTGGAGTCAATTCAAAAGTATCTCTGGCCAAGATTATGCAAACTTGATCAATTAACCCTGTATGAGTTACACTACCAGATGATTACATTTGGAAAGGTTTTCTGCACAAAAAGTAAACCAAATTGCAACGCATGTCCAATGAGAGGCGAGTGCAGACACTTCGCAAGTGCTTTTGCAAGTGCTCGACTTGCCCTGCCGGGGCCAGAGGAGAAGAGTATTGTAAGTTCAAATACTGCAGCTGTAGCTGAGAAGAATCCTGCTGGAGCTGGCAATATAATGTCACTACCTCCACCTGAAAACTACTTGCTTCAGAAAGTAGGTTCTTATAGAAGTGAACCAATCATAGAAGAACCAGCGACACCAGAGCAAGATTTCACTAATCTATCACAAAGTGACATTGAAGACTTGTTCAATGAGGAATATGAGGAGGATCCTGATGAGATTCCTACCATCAATGTCAGCATGGAACAGTTCACAGACACATTACAAAACTATATGCAAAAGAACATGGATCTCCAAGAAGGAGACATGTCCAAGGCTTTAGTTGCCTTGAATCCAGAAGCTGCTTCTCTGCCTATTCCCAAGCTCAAGAATGTCAGTCGACTACGAACAGAGCACCAAGTGTATGAACTACCAGATTCACATCCACTTTTGGAAGGGATGGACAGACGGGAACCAGATGATCCAAGCCCATACCTTCTTGCAATATGGACGCCAGGTGAAACTGCAAATTCATTTCAACCACCAGAAAGCAGGTGTGGCTCCCAAGATGGAACCAGATTGTGCAATGAGAAGACATGCTTTTCATGCAACAGTATAAGAGAAGAAAAGTCGCAGATAGTCAGAGGGACAATTTTGATTCCTTGTAGAACAGCAATGAGAGGGAGCTTTCCACTCAATGGCACATACTTTCAGGCTAGATTTACCATATACCGTGCACTCATAGCTATTAACTACTTCATCACCATGCAGATGTTTGCAGATCATGCTTCTAGTGTCAACCCAATTGATGTTCCAAGAGGATGGATATGGGATTTACCAAGACGACCTGTGTACTTTGGAACTTCTGTAACATCAATATTCAGAGGTCTATCAACAGAGGGGATCCAGTACTGCTTTTGGAGAGGATATGTTTGTGTAAGGGGCTTTGACAGAAGTACGAGAGCGCCAAAACCCTTAATCACAAGATTGCACTTTCCTCAAAGCAAGATGGCGAAGGCCAAAAATGAAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0003906 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006349 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010468 GO:0016787 GO:0016798 GO:0016799 GO:0019104 GO:0019222 GO:0022414 GO:0032259 GO:0032501 GO:0032502 GO:0034641 GO:0040029 GO:0043076 GO:0043078 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0044728 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0060255 GO:0061458 GO:0065007 GO:0071514 GO:0071704 GO:0090304 GO:0140097 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Perm-CXXC RRM_DME

Protein Analysis

803

Amino Acids

90.89

Weight (kDa)

6.06

Isoelectric Point (pI)

47.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Perm-CXXC	PF15629	641 - 672	3.3e-13	Permuted single zf-CXXC unit
RRM_DME	PF15628	675 - 698	3.6e-11	RRM in Demeter
RRM_DME	PF15628	710 - 791	4e-32	RRM in Demeter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002428)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04560 AT5G04560 AT5G04560
fragaria_vesca	FvH4_2g10170 FvH4_2g10170 FvH4_2g10170 FvH4_2g10170 FvH4_2g10170
malus_domestica	MD02G1245300.v1.1 MD07G1071800.v1.1 MD09G1259000.v1.1 MD09G1259100.v1.1 MD17G1253500.v1.1 MD17G1253600.v1.1
prunus_persica	Prupe.2G089400_v2.0.a1 Prupe.7G005000_v2.0.a1 Prupe.7G005000_v2.0.a1 Prupe.7G005000_v2.0.a1 Prupe.7G005000_v2.0.a1 Prupe.7G005000_v2.0.a1 Prupe.7G005000_v2.0.a1
pyrus_communis	pycom02g21110 pycom09g17380 pycom17g25620 pycom17g25630
rosa_chinensis	RchiOBHm_Chr6g0267351 RchiOBHm_Chr6g0267361
rosa_laevigata	RLG00000014013
rosa_multiflora	Rmu_sc0000746.1_g000002 Rmu_sc0019664.1_g000001
rosa_roxburghii	Rroxscaffold_7G00200830
rosa_rugosa	Rorug06G0031600 Rorug06G0031700 Rorug06G0031800 Rorug06G0031900 Rorug06G0032000
rosa_samantha	Rh6AG153500 Rh6BG153200 Rh6CG149300 Rh6DG137600
rosa_wichuraiana	Rw6G013200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	833
AarI	CACCTGC	2 cut(s)	751, 1920
Acc36I	ACCTGC	3 cut(s)	343, 751, 1920
AccB7I	CCANNNNNTGG	1 cut(s)	2075
AccI	GTMKAC	1 cut(s)	1777
AccII	CGCG	1 cut(s)	435
AciI	CCGC	1 cut(s)	433
AclWI	GGATC	9 cut(s)	341, 354, 628, 1601, 1614, 1695, 1853, 2275, 2288
AcoI	YGGCCR	2 cut(s)	768, 1202
AcsI	RAATTY	5 cut(s)	142, 481, 903, 911, 1906
AcuI	CTGAAG	2 cut(s)	244, 1469
AcyI	GRCGYC	1 cut(s)	1889
AdeI	CACNNNGTG	2 cut(s)	1568, 1798
AfaI	GTAC	7 cut(s)	137, 313, 1104, 1169, 2231, 2288, 2335
AfiI	CCNNNNNNNGG	6 cut(s)	660, 777, 1177, 1319, 1374, 2075
AflIII	ACRYGT	1 cut(s)	1704
AjnI	CCWGG	2 cut(s)	520, 1891
AleI	CACNNNNGTG	1 cut(s)	375
Alw21I	GWGCWC	5 cut(s)	326, 361, 1360, 1794, 2116
Alw26I	GTCTC	1 cut(s)	1695
Alw44I	GTGCAC	1 cut(s)	2112
AlwI	GGATC	9 cut(s)	341, 354, 628, 1601, 1614, 1695, 1853, 2275, 2288
AlwNI	CAGNNNCTG	3 cut(s)	284, 766, 1739
AoxI	GGCC	5 cut(s)	206, 768, 1202, 1376, 2394
ApaLI	GTGCAC	1 cut(s)	2112
ApeKI	GCWGC	4 cut(s)	117, 544, 1412, 1739
ApoI	RAATTY	5 cut(s)	142, 481, 903, 911, 1906
Asp700I	GAANNNNTTC	2 cut(s)	516, 1038
AspLEI	GCGC	1 cut(s)	2344
AspS9I	GGNCC	2 cut(s)	1117, 1376
AsuC2I	CCSGG	2 cut(s)	1073, 1374
AsuHPI	GGTGA	3 cut(s)	1049, 1907, 2131
AsuNHI	GCTAGC	1 cut(s)	892
AvaII	GGWCC	1 cut(s)	1117
BaeGI	GKGCMC	2 cut(s)	975, 2116
BaeI	ACNNNNGTAYC	4 cut(s)	119, 152, 1071, 1104
BalI	TGGCCA	1 cut(s)	1204
BamHI	GGATCC	3 cut(s)	346, 1606, 2280
BanII	GRGCYC	1 cut(s)	326
BbsI	GAAGAC	2 cut(s)	1584, 1976
Bbv12I	GWGCWC	5 cut(s)	326, 361, 1360, 1794, 2116
BbvI	GCAGC	4 cut(s)	129, 556, 1424, 1726
BcgI	CGANNNNNNTGC	4 cut(s)	792, 826, 1318, 1352
BciT130I	CCWGG	2 cut(s)	522, 1893
BclI	TGATCA	1 cut(s)	1222
BcnI	CCSGG	2 cut(s)	1073, 1374
BcoDI	GTCTC	1 cut(s)	1695
BfaI	CTAG	4 cut(s)	893, 1160, 2094, 2169
BfmI	CTRYAG	3 cut(s)	606, 1410, 1416
BfoI	RGCGCY	1 cut(s)	2345
BfuAI	ACCTGC	3 cut(s)	343, 751, 1920
BisI	GCNGC	4 cut(s)	118, 545, 1413, 1740
BlpI	GCTNAGC	1 cut(s)	897
BlsI	GCNGC	4 cut(s)	119, 546, 1414, 1741
BmcAI	AGTACT	2 cut(s)	313, 2288
Bme1390I	CCNGG	4 cut(s)	522, 1073, 1374, 1893
Bme18I	GGWCC	1 cut(s)	1117
BmgT120I	GGNCC	2 cut(s)	1117, 1376
BmrFI	CCNGG	4 cut(s)	522, 1073, 1374, 1893
BmrI	ACTGGG	1 cut(s)	751
BmsI	GCATC	3 cut(s)	790, 954, 1164
BmtI	GCTAGC	1 cut(s)	896
BmuI	ACTGGG	1 cut(s)	751
BpiI	GAAGAC	2 cut(s)	1584, 1976
BpmI	CTGGAG	4 cut(s)	168, 1130, 1199, 1458
Bpu1102I	GCTNAGC	1 cut(s)	897
BpuEI	CTTGAG	3 cut(s)	312, 358, 1748
BpuMI	CCSGG	2 cut(s)	1073, 1374
Bsa29I	ATCGAT	1 cut(s)	948
BsaBI	GATNNNNATC	1 cut(s)	1818
BsaHI	GRCGYC	1 cut(s)	1889
BsaJI	CCNNGG	4 cut(s)	222, 937, 1373, 1710
BsaXI	ACNNNNNCTCC	2 cut(s)	1134, 1164
Bsc4I	CCNNNNNNNGG	6 cut(s)	660, 777, 1177, 1319, 1374, 2075
Bse1I	ACTGG	2 cut(s)	746, 2284
Bse3DI	GCAATG	4 cut(s)	418, 810, 1969, 2058
Bse8I	GATNNNNATC	1 cut(s)	1818
BseBI	CCWGG	2 cut(s)	522, 1893
BseCI	ATCGAT	1 cut(s)	948
BseDI	CCNNGG	4 cut(s)	222, 937, 1373, 1710
BseGI	GGATG	5 cut(s)	885, 1118, 1819, 1842, 2204
BseJI	GATNNNNATC	1 cut(s)	1818
BseLI	CCNNNNNNNGG	6 cut(s)	660, 777, 1177, 1319, 1374, 2075
BseMI	GCAATG	4 cut(s)	418, 810, 1969, 2058
BseMII	CTCAG	3 cut(s)	376, 888, 1413
BseNI	ACTGG	2 cut(s)	746, 2284
BseRI	GAGGAG	2 cut(s)	1397, 1616
BseSI	GKGCMC	2 cut(s)	975, 2116
BseXI	GCAGC	4 cut(s)	129, 556, 1424, 1726
BseYI	CCCAGC	1 cut(s)	407
BsgI	GTGCAG	2 cut(s)	1264, 1348
Bsh1236I	CGCG	1 cut(s)	435
Bsh1285I	CGRYCG	1 cut(s)	85
BshFI	GGCC	5 cut(s)	208, 770, 1204, 1378, 2396
BshVI	ATCGAT	1 cut(s)	948
BsiEI	CGRYCG	1 cut(s)	85
BsiHKAI	GWGCWC	5 cut(s)	326, 361, 1360, 1794, 2116
BsiSI	CCGG	2 cut(s)	1073, 1373
BslFI	GGGAC	3 cut(s)	536, 1103, 2038
BslI	CCNNNNNNNGG	6 cut(s)	660, 777, 1177, 1319, 1374, 2075
BsmAI	GTCTC	1 cut(s)	1695
BsmFI	GGGAC	3 cut(s)	536, 1103, 2038
BsnI	GGCC	5 cut(s)	208, 770, 1204, 1378, 2396
Bsp1286I	GDGCHC	6 cut(s)	326, 361, 975, 1360, 1794, 2116
Bsp143I	GATC	8 cut(s)	346, 620, 1222, 1606, 1687, 1858, 2158, 2280
Bsp1720I	GCTNAGC	1 cut(s)	897
Bsp19I	CCATGG	1 cut(s)	937
BspACI	CCGC	1 cut(s)	433
BspANI	GGCC	5 cut(s)	208, 770, 1204, 1378, 2396
BspCNI	CTCAG	3 cut(s)	375, 889, 1414
BspDI	ATCGAT	1 cut(s)	948
BspFNI	CGCG	1 cut(s)	435
BspMAI	CTGCAG	1 cut(s)	1414
BspMI	ACCTGC	3 cut(s)	343, 751, 1920
BspOI	GCTAGC	1 cut(s)	896
BspPI	GGATC	9 cut(s)	341, 354, 628, 1601, 1614, 1695, 1853, 2275, 2288
BsrDI	GCAATG	4 cut(s)	418, 810, 1969, 2058
BsrI	ACTGG	2 cut(s)	746, 2284
BssECI	CCNNGG	4 cut(s)	222, 937, 1373, 1710
BssMI	GATC	8 cut(s)	346, 620, 1222, 1606, 1687, 1858, 2158, 2280
BssNI	GRCGYC	1 cut(s)	1889
BssT1I	CCWWGG	3 cut(s)	222, 937, 1710
Bst2UI	CCWGG	2 cut(s)	522, 1893
Bst4CI	ACNGT	7 cut(s)	286, 610, 663, 1167, 1647, 1991, 2111
Bst6I	CTCTTC	2 cut(s)	1382, 2400
BstACI	GRCGYC	1 cut(s)	1889
BstAPI	GCANNNNNTGC	1 cut(s)	2162
BstC8I	GCNNGC	4 cut(s)	542, 768, 894, 1444
BstDEI	CTNAG	3 cut(s)	362, 897, 1422
BstDSI	CCRYGG	1 cut(s)	937
BstF5I	GGATG	5 cut(s)	885, 1118, 1819, 1842, 2204
BstFNI	CGCG	1 cut(s)	435
BstH2I	RGCGCY	1 cut(s)	2345
BstHHI	GCGC	1 cut(s)	2344
BstKTI	GATC	8 cut(s)	349, 623, 1225, 1609, 1690, 1861, 2161, 2283
BstMAI	GTCTC	1 cut(s)	1695
BstMBI	GATC	8 cut(s)	346, 620, 1222, 1606, 1687, 1858, 2158, 2280
BstMCI	CGRYCG	1 cut(s)	85
BstMWI	GCNNNNNNNGC	8 cut(s)	898, 1364, 1418, 1721, 1935, 1983, 2120, 2162
BstNI	CCWGG	2 cut(s)	522, 1893
BstNSI	RCATGY	5 cut(s)	544, 892, 1311, 1708, 1977
BstSCI	CCNGG	4 cut(s)	520, 1071, 1372, 1891
BstSFI	CTRYAG	3 cut(s)	606, 1410, 1416
BstSLI	GKGCMC	2 cut(s)	975, 2116
BstUI	CGCG	1 cut(s)	435
BstV1I	GCAGC	4 cut(s)	129, 556, 1424, 1726
BstV2I	GAAGAC	2 cut(s)	1584, 1976
BstX2I	RGATCY	4 cut(s)	346, 1606, 1687, 2280
BstXI	CCANNNNNNTGG	1 cut(s)	2199
BstYI	RGATCY	4 cut(s)	346, 1606, 1687, 2280
Bsu15I	ATCGAT	1 cut(s)	948
BsuRI	GGCC	5 cut(s)	208, 770, 1204, 1378, 2396
BsuTUI	ATCGAT	1 cut(s)	948
BtgI	CCRYGG	1 cut(s)	937
BtsCI	GGATG	5 cut(s)	885, 1118, 1819, 1842, 2204
BtsIMutI	CAGTG	3 cut(s)	49, 187, 615
BveI	ACCTGC	3 cut(s)	343, 751, 1920
Cac8I	GCNNGC	4 cut(s)	542, 768, 894, 1444
CaiI	CAGNNNCTG	3 cut(s)	284, 766, 1739
CfoI	GCGC	1 cut(s)	2344
Cfr13I	GGNCC	2 cut(s)	1117, 1376
ClaI	ATCGAT	1 cut(s)	948
CseI	GACGC	1 cut(s)	1897
Csp6I	GTAC	7 cut(s)	136, 312, 1103, 1168, 2230, 2287, 2334
CviQI	GTAC	7 cut(s)	136, 312, 1103, 1168, 2230, 2287, 2334
DdeI	CTNAG	3 cut(s)	362, 897, 1422
DpnI	GATC	8 cut(s)	348, 622, 1224, 1608, 1689, 1860, 2160, 2282
DpnII	GATC	8 cut(s)	346, 620, 1222, 1606, 1687, 1858, 2158, 2280
DraIII	CACNNNGTG	2 cut(s)	1568, 1798
EaeI	YGGCCR	2 cut(s)	768, 1202
Eam1104I	CTCTTC	2 cut(s)	1382, 2400
EarI	CTCTTC	2 cut(s)	1382, 2400
Ecl136II	GAGCTC	1 cut(s)	324
Eco130I	CCWWGG	3 cut(s)	222, 937, 1710
Eco24I	GRGCYC	1 cut(s)	326
Eco47I	GGWCC	1 cut(s)	1117
Eco53kI	GAGCTC	1 cut(s)	324
Eco57I	CTGAAG	2 cut(s)	244, 1469
EcoICRI	GAGCTC	1 cut(s)	324
EcoO109I	RGGNCCY	1 cut(s)	1117
EcoRI	GAATTC	2 cut(s)	903, 911
EcoRII	CCWGG	2 cut(s)	520, 1891
EcoT14I	CCWWGG	3 cut(s)	222, 937, 1710
EcoT38I	GRGCYC	1 cut(s)	326
ErhI	CCWWGG	3 cut(s)	222, 937, 1710
FalI	AAGNNNNNCTT	4 cut(s)	181, 213, 1961, 1993
FaqI	GGGAC	3 cut(s)	536, 1103, 2038
FauI	CCCGC	1 cut(s)	440
FauNDI	CATATG	1 cut(s)	352
FbaI	TGATCA	1 cut(s)	1222
FblI	GTMKAC	1 cut(s)	1777
Fnu4HI	GCNGC	4 cut(s)	118, 545, 1413, 1740
FokI	GGATG	5 cut(s)	892, 1125, 1806, 1849, 2211
FriOI	GRGCYC	1 cut(s)	326
Fsp4HI	GCNGC	4 cut(s)	118, 545, 1413, 1740
FspBI	CTAG	4 cut(s)	893, 1160, 2094, 2169
GlaI	GCGC	1 cut(s)	2343
GluI	GCNGC	4 cut(s)	118, 545, 1413, 1740
GsaI	CCCAGC	1 cut(s)	411
GsuI	CTGGAG	4 cut(s)	168, 1130, 1199, 1458
HaeII	RGCGCY	1 cut(s)	2345
HaeIII	GGCC	5 cut(s)	208, 770, 1204, 1378, 2396
HapII	CCGG	2 cut(s)	1073, 1373
HgaI	GACGC	1 cut(s)	1897
HhaI	GCGC	1 cut(s)	2344
Hin1I	GRCGYC	1 cut(s)	1889
Hin6I	GCGC	1 cut(s)	2342
HinP1I	GCGC	1 cut(s)	2342
HincII	GTYRAC	3 cut(s)	739, 1778, 2176
HindII	GTYRAC	3 cut(s)	739, 1778, 2176
HinfI	GANTC	8 cut(s)	809, 1139, 1181, 1429, 1618, 1729, 1814, 2035
HpaII	CCGG	2 cut(s)	1073, 1373
HphI	GGTGA	3 cut(s)	1049, 1907, 2131
Hpy188I	TCNGA	6 cut(s)	263, 365, 715, 1488, 2021, 2261
Hpy188III	TCNNGA	8 cut(s)	77, 147, 279, 329, 908, 1610, 1733, 1765
HpyAV	CCTTC	8 cut(s)	120, 219, 438, 693, 1691, 1826, 1883, 2386
HpyCH4III	ACNGT	7 cut(s)	286, 610, 663, 1167, 1647, 1991, 2111
HpyF10VI	GCNNNNNNNGC	8 cut(s)	898, 1364, 1418, 1721, 1935, 1983, 2120, 2162
HpyF3I	CTNAG	3 cut(s)	362, 897, 1422
Hsp92I	GRCGYC	1 cut(s)	1889
HspAI	GCGC	1 cut(s)	2342
KflI	GGGWCCC	1 cut(s)	1117
Ksp22I	TGATCA	1 cut(s)	1222
Kzo9I	GATC	8 cut(s)	346, 620, 1222, 1606, 1687, 1858, 2158, 2280
LmnI	GCTCC	9 cut(s)	7, 112, 321, 643, 871, 1155, 1439, 1943, 2061
Lsp1109I	GCAGC	4 cut(s)	129, 556, 1424, 1726
LweI	GCATC	3 cut(s)	790, 954, 1164
MaeI	CTAG	4 cut(s)	893, 1160, 2094, 2169
MaeIII	GTNAC	9 cut(s)	58, 377, 663, 679, 719, 1242, 1455, 1568, 2245
MalI	GATC	8 cut(s)	348, 622, 1224, 1608, 1689, 1860, 2160, 2282
MboI	GATC	8 cut(s)	346, 620, 1222, 1606, 1687, 1858, 2158, 2280
MfeI	CAATTG	2 cut(s)	102, 2181
MflI	RGATCY	4 cut(s)	346, 1606, 1687, 2280
MhlI	GDGCHC	6 cut(s)	326, 361, 975, 1360, 1794, 2116
MlsI	TGGCCA	1 cut(s)	1204
MluNI	TGGCCA	1 cut(s)	1204
MlyI	GAGTC	2 cut(s)	803, 1190
MmeI	TCCRAC	1 cut(s)	1150
Mox20I	TGGCCA	1 cut(s)	1204
MroXI	GAANNNNTTC	2 cut(s)	516, 1038
MscI	TGGCCA	1 cut(s)	1204
MseI	TTAA	8 cut(s)	627, 752, 846, 930, 1001, 1229, 2127, 2354
MslI	CAYNNNNRTG	4 cut(s)	375, 447, 2141, 2147
Msp20I	TGGCCA	1 cut(s)	1204
MspA1I	CMGCKG	2 cut(s)	568, 1415
MspI	CCGG	2 cut(s)	1073, 1373
MspR9I	CCNGG	4 cut(s)	522, 1073, 1374, 1893
MunI	CAATTG	2 cut(s)	102, 2181
MvaI	CCWGG	2 cut(s)	522, 1893
MvnI	CGCG	1 cut(s)	435
MwoI	GCNNNNNNNGC	8 cut(s)	898, 1364, 1418, 1721, 1935, 1983, 2120, 2162
NciI	CCSGG	2 cut(s)	1073, 1374
NcoI	CCATGG	1 cut(s)	937
NdeI	CATATG	1 cut(s)	352
NdeII	GATC	8 cut(s)	346, 620, 1222, 1606, 1687, 1858, 2158, 2280
NheI	GCTAGC	1 cut(s)	892
NmuCI	GTSAC	6 cut(s)	58, 377, 663, 719, 1455, 1568
NspI	RCATGY	5 cut(s)	544, 892, 1311, 1708, 1977
OliI	CACNNNNGTG	1 cut(s)	375
PaeI	GCATGC	1 cut(s)	544
PaqCI	CACCTGC	2 cut(s)	751, 1920
PciI	ACATGT	1 cut(s)	1704
PdmI	GAANNNNTTC	2 cut(s)	516, 1038
PfeI	GAWTC	6 cut(s)	1139, 1429, 1618, 1729, 1814, 2035
PflMI	CCANNNNNTGG	1 cut(s)	2075
PfoI	TCCNGGA	1 cut(s)	520
PkrI	GCNGC	4 cut(s)	119, 546, 1414, 1741
PleI	GAGTC	2 cut(s)	803, 1189
PpsI	GAGTC	2 cut(s)	803, 1189
PpuMI	RGGWCCY	1 cut(s)	1117
PscI	ACATGT	1 cut(s)	1704
PsiI	TTATAA	1 cut(s)	833
Psp124BI	GAGCTC	1 cut(s)	326
Psp5II	RGGWCCY	1 cut(s)	1117
Psp6I	CCWGG	2 cut(s)	520, 1891
PspFI	CCCAGC	1 cut(s)	407
PspGI	CCWGG	2 cut(s)	520, 1891
PspPI	GGNCC	2 cut(s)	1117, 1376
PspPPI	RGGWCCY	1 cut(s)	1117
PsrI	GAACNNNNNNTAC	2 cut(s)	1384, 1416
PstI	CTGCAG	1 cut(s)	1414
PstNI	CAGNNNCTG	3 cut(s)	284, 766, 1739
PsuI	RGATCY	4 cut(s)	346, 1606, 1687, 2280
PvuII	CAGCTG	2 cut(s)	568, 1415
RsaI	GTAC	7 cut(s)	137, 313, 1104, 1169, 2231, 2288, 2335
RsaNI	GTAC	7 cut(s)	136, 312, 1103, 1168, 2230, 2287, 2334
RseI	CAYNNNNRTG	4 cut(s)	375, 447, 2141, 2147
SacI	GAGCTC	1 cut(s)	326
SalI	GTCGAC	1 cut(s)	1776
SaqAI	TTAA	8 cut(s)	627, 752, 846, 930, 1001, 1229, 2127, 2354
SatI	GCNGC	4 cut(s)	118, 545, 1413, 1740
Sau3AI	GATC	8 cut(s)	346, 620, 1222, 1606, 1687, 1858, 2158, 2280
Sau96I	GGNCC	2 cut(s)	1117, 1376
ScaI	AGTACT	2 cut(s)	313, 2288
SchI	GAGTC	2 cut(s)	803, 1190
ScrFI	CCNGG	4 cut(s)	522, 1073, 1374, 1893
SduI	GDGCHC	6 cut(s)	326, 361, 975, 1360, 1794, 2116
SfaNI	GCATC	3 cut(s)	790, 954, 1164
SfcI	CTRYAG	3 cut(s)	606, 1410, 1416
SinI	GGWCC	1 cut(s)	1117
SmiMI	CAYNNNNRTG	4 cut(s)	375, 447, 2141, 2147
SmlI	CTYRAG	3 cut(s)	327, 373, 1763
SmoI	CTYRAG	3 cut(s)	327, 373, 1763
SphI	GCATGC	1 cut(s)	544
SsiI	CCGC	1 cut(s)	433
SspI	AATATT	3 cut(s)	419, 688, 2256
SspMI	CTAG	4 cut(s)	893, 1160, 2094, 2169
SstI	GAGCTC	1 cut(s)	326
StyD4I	CCNGG	4 cut(s)	520, 1071, 1372, 1891
StyI	CCWWGG	3 cut(s)	222, 937, 1710
TaaI	ACNGT	7 cut(s)	286, 610, 663, 1167, 1647, 1991, 2111
TaqI	TCGA	6 cut(s)	303, 922, 948, 1009, 1360, 1777
TaqII	GACCGA	1 cut(s)	99
TatI	WGTACW	3 cut(s)	311, 2229, 2286
TfiI	GAWTC	6 cut(s)	1139, 1429, 1618, 1729, 1814, 2035
Tru1I	TTAA	8 cut(s)	627, 752, 846, 930, 1001, 1229, 2127, 2354
Tru9I	TTAA	8 cut(s)	627, 752, 846, 930, 1001, 1229, 2127, 2354
TscAI	CASTG	3 cut(s)	49, 187, 615
TseFI	GTSAC	6 cut(s)	58, 377, 663, 719, 1455, 1568
TseI	GCWGC	4 cut(s)	117, 544, 1412, 1739
Tsp45I	GTSAC	6 cut(s)	58, 377, 663, 719, 1455, 1568
TspRI	CASTG	3 cut(s)	49, 187, 615
Van91I	CCANNNNNTGG	1 cut(s)	2075
VneI	GTGCAC	1 cut(s)	2112
VpaK11BI	GGWCC	1 cut(s)	1117
XapI	RAATTY	5 cut(s)	142, 481, 903, 911, 1906
XceI	RCATGY	5 cut(s)	544, 892, 1311, 1708, 1977
XmiI	GTMKAC	1 cut(s)	1777
XmnI	GAANNNNTTC	2 cut(s)	516, 1038
XspI	CTAG	4 cut(s)	893, 1160, 2094, 2169
ZrmI	AGTACT	2 cut(s)	313, 2288

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.