Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0002428

Physical Location & Seq

Genomic Coordinates Forward (+)

30713259 .. 30724790

Gene Structure 11532 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1253500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3198 bp

ATGGATTCTTGGGTTCCAGTGACTCCAGCGAAGCCTCATCCGGTCCCAGTCAACCTTTATGGGAACCTCCATCAAGGAGGAAATTGGCAACAACAATTGACTGGAATTACGAGGGAGCATGTACCGGTGGGGGCTAGTTACAATGGCATGGCTCAAGCTGTTAGCCCGAATGGTCAGCTACATAGATGTGGTTATGATGGTAGTCTGGGGGAGAACATTCAAATGATCAATCACATTTCGGACTCCTACAATGCAGGATCCTTCACACAGTTGCTCTCTGATGAAGGCTCAAGTTGGAAAGATAATCCATTGACACAACAGCTGTTACATGATAATGCTGCTTATATTGCCACTGCAAACAGGCCCCCGAGCAGAAGTGTGGGCATAGCAGCAAACACACCTCTAATTCCTAAGTTGCATCCTCAATTGAGAAACCAAGGCATTGACTCGGATGGTTTCTTGCTAACCAACCAAAATTTCAACAATGGTTCATATCCTTCAGGTGGCATGGACATAGCAGCGAACACACATCTATATCCCAAGTTGCATCCTCAATTGAGAAACCAAGGAATCGATTCGGGTAGTTTCTTGCTAACCAATCTAAATTGCAACAATTTTTCATATCCTTCAAGTAAGGTGATGAGCACATCGTTGGTTATGGATTTTCCTTCTCAAGTTGACAACAGTCCGAGAGATTCCAACTCAGTTCATTGGTTATTTGGCGACCAAAATTACTGCTCAAGTTCCAATTCAAACCCATTGAGTTATGGTGACAGCTCGTCCCAGATGTGCCAGAGAGATGAAGCAATTCAAAAAAATGGTGACGAACTCTTGGAGAACATTGTGGAGTCATCATCAGCAGCCATTTCTATACCCTACAAGGGAAACAAAGATTCTGACAGGGAAGGTGACAGAGTGACTGATCTAAACAAGACACCGCAGCAGAAACCATCGAAGCGAAGAAAACACAGGCCCAAGGTAATCAGAGAAGGCAAACCCAAAGGGAAACCAAAGCCTACAACTCCAAGCAATACAGAGTCTAGGGAGAACCAACCAGCAAAGAGGAAGTACGTAAGAAAGAATGTTCAAAAGGAATCCCCAAGTCCACTGGCAAATCGTATAAGGGAGACAATAGACCCTAAAACTGGAAAAGGTGCAAAATCATGCAGAAGAGCTCTAAATTTTGATTCGGAAAATACCATGGATGAAAACCAATGCAAAGCAGTTGGTCAACAAGAGGAGATGCAGCAAGGGATCAAGATGAATTTTGATTCTCAAGGGACACCTATGGTCCCTGTAACTAACCAGGGATTTAAAGCCAGGCCAGCAAAGCAAAGTGTCCTACAGAACGAATTGATGGTACAGAACCAGATTCCAGGAACTATGAGTAACTTTACCTCTTCCATGAATCTTATGCCAAATAACTTTGTATTCCTCCCAGAAAGGCGACCATTGGCATTCCTACTTACTACAACAAAAGACATGCATCCGAAAAATTTGCATGTTATGGGGAGACATGTAGAATATGGGAATTATGATTTATGCCAGAGAAGATGCAGAGATGGATACACTCCCTTGCAGCAACATAGCCATAATGAAGGAATGTGTCAAGATATCATTCAAGCAAAAACTAGCAGTGAGAGCCTTCAGATAAAAGAAAATAATACAATAGACCCTAATACTGGAAAGGGTGACTCTCACTCGGTACTAAATATCTTCTCCCTCTCCCTTCCAAGTGAAGTAAAGGGATCCAAGAGGGAGTATTGTCGAACCGTTGAGCATACACATCTTTCTACCAATCTTCCACCTAGTTCATTGTCTTGCCAAGAGATACATCAAATGGATGGCCATCAGAGAGTGCTAAGCCAGGATTTTTCACATAAGAAACAGAAATTCGAGAATGGGTACTTGGGCATCTATAATATGCCTTGTGAAGTTACACCAATTGAGGAGCGTCTGGGGAAATTTGAAAGAACAGGGCAAAATAAAGTCAACTCAAATGGATTTGCATCAAAGAAACATACAATATTGAGTTCTTCCATTGAAAGCAACAAAAGGATGGACAGACAGAACAAAGGGATGGGCAAGTTTACAAGTGACAGATACACTTACTTAATCACTTCTGGGAATAATTTTCTAAATCCCCAGATTTCATCCAATTCACATTCGTGCCATGATTTCACTCAAGGTCTTTGTTTTTCCACCCATTCCACGATTGAAACCTGTAACCAGCTAGCCTCATCATATCCCAAAAAATCCTTTCAACCAGGAAACAAGCAGGTATCTCAAACTCGCCATGATAACATGTTAAAAATGAAGCAGACTGTGGGACCCACAAAGGCGGGTATAGATAATGTCCTGCAAGAGAAGGATGCCTCATACAATTATCAGCAGCCTTCTTCAAAAGCAATCGGGTTTCAAGTAAGAGGACATACCATATCAATAGATAACATCATACATGAGTTTAATAATCTGAACCTCAATGGAAGATGCAGCAAAATGTTAGAGCATAAGCAAAATGCCCTTGTTCCATACAAAGGAAACAGTGCAGTTGTTCCCTATGAAAGATTTATCAAGAAACATAAGCCACGGCCTAAAGTAGAGCTTGACCCAGAAACAAATAGGATATGGAATCTTTTGATGGGCAAGGAAGGAAGCGGAGGCATTGAAGGAAATGATAAGAAAAAGGAAAAGTATTGGGAAGAGGAAAGAAAGGTTGTCCAATGCCGAGTTGAATCATTCATTGCACGCATGCATCTTGTTCAAGTGATTGGAGTTTTCCTTACTCAGAATGTTTCAGACCATCTATCAAGCTCTGCCTTCATGTCTTTGGCTGCACGATTTCCGCTTAAGTCAAGCAATCACCAAGCTCAACAGAAGGTTGGGACAAACATATTGGTAAAAGAACCCGCAGTTCACATGACAAGTCCAGATGATGTCACCAAATGGCATAAATATATGTCAAGTCGGCCAATCTATCACCTGATTTCTAGGACACTCTGTGAATCTGAAGATAACCAGATGGAGAAAGAAACCAAGAAGGTTCATGTTTCCCTTTCAGCACGTCAACAGATGGAGAAAGCAACCAAGTTTCGTGACGTTTACAATCAAGTAAATGGAATTTCACTGTCAGATGACAGATCCAAGAATGGGCATATTAGATATGCACAGCTAAAGAGACGATCAGACAGAGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0003906 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006349 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010468 GO:0016787 GO:0016798 GO:0016799 GO:0019104 GO:0019222 GO:0022414 GO:0032259 GO:0032501 GO:0032502 GO:0034641 GO:0040029 GO:0043076 GO:0043078 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0044728 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0060255 GO:0061458 GO:0065007 GO:0071514 GO:0071704 GO:0090304 GO:0140097 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Perm-CXXC RRM_DME

Protein Analysis

1066

Amino Acids

119.77

Weight (kDa)

9.28

Isoelectric Point (pI)

45.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002428)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04560 AT5G04560 AT5G04560
fragaria_vesca	FvH4_2g10170 FvH4_2g10170 FvH4_2g10170 FvH4_2g10170 FvH4_2g10170
malus_domestica	MD02G1245300.v1.1 MD07G1071800.v1.1 MD09G1259000.v1.1 MD09G1259100.v1.1 MD17G1253500.v1.1 MD17G1253600.v1.1
prunus_persica	Prupe.2G089400_v2.0.a1 Prupe.7G005000_v2.0.a1 Prupe.7G005000_v2.0.a1 Prupe.7G005000_v2.0.a1 Prupe.7G005000_v2.0.a1 Prupe.7G005000_v2.0.a1 Prupe.7G005000_v2.0.a1
pyrus_communis	pycom02g21110 pycom09g17380 pycom17g25620 pycom17g25630
rosa_chinensis	RchiOBHm_Chr6g0267351 RchiOBHm_Chr6g0267361
rosa_laevigata	RLG00000014013
rosa_multiflora	Rmu_sc0000746.1_g000002 Rmu_sc0019664.1_g000001
rosa_roxburghii	Rroxscaffold_7G00200830
rosa_rugosa	Rorug06G0031600 Rorug06G0031700 Rorug06G0031800 Rorug06G0031900 Rorug06G0032000
rosa_samantha	Rh6AG153500 Rh6BG153200 Rh6CG149300 Rh6DG137600
rosa_wichuraiana	Rw6G013200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	2269
AciI	CCGC	5 cut(s)	938, 2342, 2658, 2846, 2910
AclWI	GGATC	6 cut(s)	252, 265, 1262, 1743, 1756, 3135
AcoI	YGGCCR	2 cut(s)	1846, 2969
AcsI	RAATTY	7 cut(s)	475, 1180, 1264, 1495, 1892, 1964, 3120
AcuI	CTGAAG	3 cut(s)	483, 1631, 3030
AdeI	CACNNNGTG	1 cut(s)	3002
AfaI	GTAC	5 cut(s)	123, 1070, 1362, 1707, 1907
AfiI	CCNNNNNNNGG	6 cut(s)	503, 881, 1145, 1682, 2537, 3150
AflII	CTTAAG	1 cut(s)	2849
AflIII	ACRYGT	2 cut(s)	1516, 2304
AgeI	ACCGGT	1 cut(s)	124
AhdI	GACNNNNNGTC	1 cut(s)	778
AjiI	CACGTC	1 cut(s)	3065
AjnI	CCWGG	5 cut(s)	1305, 1319, 1375, 1866, 2266
AjuI	GAANNNNNNNTTGG	4 cut(s)	461, 493, 1892, 1924
AleI	CACNNNNGTG	1 cut(s)	2167
Alw21I	GWGCWC	2 cut(s)	647, 1177
Alw26I	GTCTC	3 cut(s)	1121, 1507, 3172
AlwI	GGATC	6 cut(s)	252, 265, 1262, 1743, 1756, 3135
Ama87I	CYCGRG	1 cut(s)	367
AoxI	GGCC	6 cut(s)	362, 971, 1322, 1846, 2591, 2969
ApoI	RAATTY	7 cut(s)	475, 1180, 1264, 1495, 1892, 1964, 3120
AsiGI	ACCGGT	1 cut(s)	124
Asp700I	GAANNNNTTC	2 cut(s)	574, 807
AspS9I	GGNCC	5 cut(s)	43, 363, 972, 1291, 2330
AsuHPI	GGTGA	8 cut(s)	649, 782, 833, 920, 1703, 2855, 2932, 2972
AsuNHI	GCTAGC	1 cut(s)	2233
AvaI	CYCGRG	1 cut(s)	367
AvaII	GGWCC	3 cut(s)	43, 1291, 2330
BalI	TGGCCA	1 cut(s)	1848
BamHI	GGATCC	2 cut(s)	257, 1748
BanII	GRGCYC	1 cut(s)	1177
Bbv12I	GWGCWC	2 cut(s)	647, 1177
BceAI	ACGGC	1 cut(s)	2606
BcgI	CGANNNNNNTGC	2 cut(s)	1480, 1514
BciT130I	CCWGG	5 cut(s)	1307, 1321, 1377, 1868, 2268
BciVI	GTATCC	1 cut(s)	1559
BclI	TGATCA	1 cut(s)	225
BcoDI	GTCTC	3 cut(s)	1121, 1507, 3172
BfaI	CTAG	7 cut(s)	135, 1041, 1632, 1809, 2234, 2991, 3196
BfmI	CTRYAG	1 cut(s)	1343
BfrI	CTTAAG	1 cut(s)	2849
BfuAI	ACCTGC	1 cut(s)	2269
BfuI	GTATCC	1 cut(s)	1559
BlpI	GCTNAGC	1 cut(s)	1862
Bme1390I	CCNGG	5 cut(s)	1307, 1321, 1377, 1868, 2268
Bme18I	GGWCC	3 cut(s)	43, 1291, 2330
BmeRI	GACNNNNNGTC	1 cut(s)	778
BmeT110I	CYCGRG	1 cut(s)	367
BmgBI	CACGTC	1 cut(s)	3065
BmgT120I	GGNCC	5 cut(s)	43, 363, 972, 1291, 2330
BmiI	GGNNCC	9 cut(s)	15, 45, 65, 259, 365, 1293, 1750, 2331, 2332
BmrFI	CCNGG	5 cut(s)	1307, 1321, 1377, 1868, 2268
BmrI	ACTGGG	1 cut(s)	41
BmtI	GCTAGC	1 cut(s)	2237
BmuI	ACTGGG	1 cut(s)	41
BoxI	GACNNNNGTC	1 cut(s)	684
BpmI	CTGGAG	1 cut(s)	9
Bpu1102I	GCTNAGC	1 cut(s)	1862
BpuEI	CTTGAG	6 cut(s)	138, 274, 657, 724, 1260, 2169
Bsa29I	ATCGAT	1 cut(s)	573
BsaAI	YACGTR	1 cut(s)	1072
BsaBI	GATNNNNATC	2 cut(s)	1848, 2008
BsaJI	CCNNGG	6 cut(s)	436, 565, 975, 1200, 1306, 2588
BsaWI	WCCGGW	2 cut(s)	40, 124
Bsc4I	CCNNNNNNNGG	6 cut(s)	503, 881, 1145, 1682, 2537, 3150
Bse118I	RCCGGY	1 cut(s)	124
Bse1I	ACTGG	6 cut(s)	17, 47, 106, 1113, 1150, 1687
Bse3DI	GCAATG	1 cut(s)	2742
Bse8I	GATNNNNATC	2 cut(s)	1848, 2008
BseBI	CCWGG	5 cut(s)	1307, 1321, 1377, 1868, 2268
BseCI	ATCGAT	1 cut(s)	573
BseDI	CCNNGG	6 cut(s)	436, 565, 975, 1200, 1306, 2588
BseJI	GATNNNNATC	2 cut(s)	1848, 2008
BseLI	CCNNNNNNNGG	6 cut(s)	503, 881, 1145, 1682, 2537, 3150
BseMI	GCAATG	1 cut(s)	2742
BseMII	CTCAG	2 cut(s)	717, 2801
BseNI	ACTGG	6 cut(s)	17, 47, 106, 1113, 1150, 1687
BseRI	GAGGAG	2 cut(s)	1253, 1964
BsgI	GTGCAG	2 cut(s)	2568, 2820
BshFI	GGCC	6 cut(s)	364, 973, 1324, 1848, 2593, 2971
BshTI	ACCGGT	1 cut(s)	124
BshVI	ATCGAT	1 cut(s)	573
BsiHKAI	GWGCWC	2 cut(s)	647, 1177
BsiHKCI	CYCGRG	1 cut(s)	367
BsiSI	CCGG	2 cut(s)	41, 125
BslFI	GGGAC	6 cut(s)	29, 766, 1277, 1294, 2343, 2899
BslI	CCNNNNNNNGG	6 cut(s)	503, 881, 1145, 1682, 2537, 3150
BsmAI	GTCTC	3 cut(s)	1121, 1507, 3172
BsmBI	CGTCTC	1 cut(s)	3172
BsmFI	GGGAC	6 cut(s)	29, 766, 1277, 1294, 2343, 2899
BsmI	GAATGC	1 cut(s)	1457
BsnI	GGCC	6 cut(s)	364, 973, 1324, 1848, 2593, 2971
BsoBI	CYCGRG	1 cut(s)	367
Bsp1286I	GDGCHC	2 cut(s)	647, 1177
Bsp143I	GATC	7 cut(s)	225, 257, 922, 1254, 1748, 3140, 3182
Bsp1720I	GCTNAGC	1 cut(s)	1862
Bsp19I	CCATGG	1 cut(s)	1200
BspACI	CCGC	5 cut(s)	938, 2342, 2658, 2846, 2910
BspANI	GGCC	6 cut(s)	364, 973, 1324, 1848, 2593, 2971
BspCNI	CTCAG	2 cut(s)	716, 2800
BspDI	ATCGAT	1 cut(s)	573
BspLI	GGNNCC	9 cut(s)	15, 45, 65, 259, 365, 1293, 1750, 2331, 2332
BspMI	ACCTGC	1 cut(s)	2269
BspOI	GCTAGC	1 cut(s)	2237
BspPI	GGATC	6 cut(s)	252, 265, 1262, 1743, 1756, 3135
BspQI	GCTCTTC	1 cut(s)	1165
BspTI	CTTAAG	1 cut(s)	2849
BsrDI	GCAATG	1 cut(s)	2742
BsrFI	RCCGGY	1 cut(s)	124
BsrI	ACTGG	6 cut(s)	17, 47, 106, 1113, 1150, 1687
BssAI	RCCGGY	1 cut(s)	124
BssECI	CCNNGG	6 cut(s)	436, 565, 975, 1200, 1306, 2588
BssMI	GATC	7 cut(s)	225, 257, 922, 1254, 1748, 3140, 3182
BssT1I	CCWWGG	4 cut(s)	436, 565, 975, 1200
Bst2UI	CCWGG	5 cut(s)	1307, 1321, 1377, 1868, 2268
Bst4CI	ACNGT	6 cut(s)	270, 686, 1774, 2326, 2546, 3129
Bst6I	CTCTTC	3 cut(s)	1165, 1405, 2697
BstAFI	CTTAAG	1 cut(s)	2849
BstBAI	YACGTR	1 cut(s)	1072
BstC8I	GCNNGC	4 cut(s)	1326, 2235, 2749, 2753
BstDEI	CTNAG	4 cut(s)	411, 703, 1862, 2787
BstDSI	CCRYGG	2 cut(s)	1200, 2588
BstKTI	GATC	7 cut(s)	228, 260, 925, 1257, 1751, 3143, 3185
BstMAI	GTCTC	3 cut(s)	1121, 1507, 3172
BstMBI	GATC	7 cut(s)	225, 257, 922, 1254, 1748, 3140, 3182
BstMWI	GCNNNNNNNGC	4 cut(s)	347, 1325, 1330, 1641
BstNI	CCWGG	5 cut(s)	1307, 1321, 1377, 1868, 2268
BstNSI	RCATGY	6 cut(s)	122, 1486, 1505, 1520, 2308, 2755
BstPAI	GACNNNNGTC	1 cut(s)	684
BstSCI	CCNGG	5 cut(s)	1305, 1319, 1375, 1866, 2266
BstSFI	CTRYAG	1 cut(s)	1343
BstSNI	TACGTA	1 cut(s)	1072
BstX2I	RGATCY	3 cut(s)	257, 1748, 3140
BstYI	RGATCY	3 cut(s)	257, 1748, 3140
Bsu15I	ATCGAT	1 cut(s)	573
BsuI	GTATCC	1 cut(s)	1559
BsuRI	GGCC	6 cut(s)	364, 973, 1324, 1848, 2593, 2971
BsuTUI	ATCGAT	1 cut(s)	573
BtgI	CCRYGG	2 cut(s)	1200, 2588
BtrI	CACGTC	1 cut(s)	3065
BtsI	GCAGTG	2 cut(s)	351, 1642
BtsIMutI	CAGTG	6 cut(s)	24, 351, 1106, 1642, 2551, 3125
BveI	ACCTGC	1 cut(s)	2269
Cac8I	GCNNGC	4 cut(s)	1326, 2235, 2749, 2753
Cfr10I	RCCGGY	1 cut(s)	124
Cfr13I	GGNCC	5 cut(s)	43, 363, 972, 1291, 2330
ClaI	ATCGAT	1 cut(s)	573
CseI	GACGC	1 cut(s)	1943
Csp6I	GTAC	5 cut(s)	122, 1069, 1361, 1706, 1906
CspAI	ACCGGT	1 cut(s)	124
CviQI	GTAC	5 cut(s)	122, 1069, 1361, 1706, 1906
DdeI	CTNAG	4 cut(s)	411, 703, 1862, 2787
DpnI	GATC	7 cut(s)	227, 259, 924, 1256, 1750, 3142, 3184
DpnII	GATC	7 cut(s)	225, 257, 922, 1254, 1748, 3140, 3182
DraI	TTTAAA	1 cut(s)	1315
DraIII	CACNNNGTG	1 cut(s)	3002
DriI	GACNNNNNGTC	1 cut(s)	778
EaeI	YGGCCR	2 cut(s)	1846, 2969
Eam1104I	CTCTTC	3 cut(s)	1165, 1405, 2697
Eam1105I	GACNNNNNGTC	1 cut(s)	778
EarI	CTCTTC	3 cut(s)	1165, 1405, 2697
Ecl136II	GAGCTC	1 cut(s)	1175
Eco105I	TACGTA	1 cut(s)	1072
Eco130I	CCWWGG	4 cut(s)	436, 565, 975, 1200
Eco24I	GRGCYC	1 cut(s)	1177
Eco32I	GATATC	1 cut(s)	1615
Eco47I	GGWCC	3 cut(s)	43, 1291, 2330
Eco53kI	GAGCTC	1 cut(s)	1175
Eco57I	CTGAAG	3 cut(s)	483, 1631, 3030
Eco88I	CYCGRG	1 cut(s)	367
EcoICRI	GAGCTC	1 cut(s)	1175
EcoO109I	RGGNCCY	2 cut(s)	363, 2330
EcoRII	CCWGG	5 cut(s)	1305, 1319, 1375, 1866, 2266
EcoRV	GATATC	1 cut(s)	1615
EcoT14I	CCWWGG	4 cut(s)	436, 565, 975, 1200
EcoT22I	ATGCAT	2 cut(s)	1488, 2757
EcoT38I	GRGCYC	1 cut(s)	1177
ErhI	CCWWGG	4 cut(s)	436, 565, 975, 1200
Esp3I	CGTCTC	1 cut(s)	3172
FalI	AAGNNNNNCTT	2 cut(s)	2589, 2621
FaqI	GGGAC	6 cut(s)	29, 766, 1277, 1294, 2343, 2899
FauI	CCCGC	2 cut(s)	2335, 2917
FbaI	TGATCA	1 cut(s)	225
FriOI	GRGCYC	1 cut(s)	1177
FspBI	CTAG	7 cut(s)	135, 1041, 1632, 1809, 2234, 2991, 3196
GsuI	CTGGAG	1 cut(s)	9
HaeIII	GGCC	6 cut(s)	364, 973, 1324, 1848, 2593, 2971
HapII	CCGG	2 cut(s)	41, 125
HgaI	GACGC	1 cut(s)	1943
HincII	GTYRAC	5 cut(s)	52, 679, 1232, 1993, 3068
HindII	GTYRAC	5 cut(s)	52, 679, 1232, 1993, 3068
HpaII	CCGG	2 cut(s)	41, 125
HphI	GGTGA	8 cut(s)	649, 782, 833, 920, 1703, 2855, 2932, 2972
Hpy166II	GTNNAC	9 cut(s)	52, 679, 1106, 1232, 1993, 2091, 2917, 3068, 3103
Hpy188III	TCNNGA	6 cut(s)	1258, 1610, 1897, 2575, 2930, 3095
Hpy8I	GTNNAC	9 cut(s)	52, 679, 1106, 1232, 1993, 2091, 2917, 3068, 3103
HpyCH4III	ACNGT	6 cut(s)	270, 686, 1774, 2326, 2546, 3129
HpyCH4IV	ACGT	3 cut(s)	1071, 3064, 3099
HpyF10VI	GCNNNNNNNGC	4 cut(s)	347, 1325, 1330, 1641
HpyF3I	CTNAG	4 cut(s)	411, 703, 1862, 2787
HpySE526I	ACGT	3 cut(s)	1071, 3064, 3099
KflI	GGGWCCC	1 cut(s)	2330
Ksp22I	TGATCA	1 cut(s)	225
Kzo9I	GATC	7 cut(s)	225, 257, 922, 1254, 1748, 3140, 3182
LguI	GCTCTTC	1 cut(s)	1165
LmnI	GCTCC	2 cut(s)	115, 1951
MaeI	CTAG	7 cut(s)	135, 1041, 1632, 1809, 2234, 2991, 3196
MaeII	ACGT	3 cut(s)	1071, 3064, 3099
MalI	GATC	7 cut(s)	227, 259, 924, 1256, 1750, 3142, 3184
MboI	GATC	7 cut(s)	225, 257, 922, 1254, 1748, 3140, 3182
MfeI	CAATTG	4 cut(s)	95, 425, 554, 1944
MflI	RGATCY	3 cut(s)	257, 1748, 3140
MhlI	GDGCHC	2 cut(s)	647, 1177
MlsI	TGGCCA	1 cut(s)	1848
MluNI	TGGCCA	1 cut(s)	1848
MlyI	GAGTC	6 cut(s)	16, 236, 440, 857, 1046, 1688
MmeI	TCCRAC	2 cut(s)	275, 723
Mox20I	TGGCCA	1 cut(s)	1848
Mph1103I	ATGCAT	2 cut(s)	1488, 2757
MroXI	GAANNNNTTC	2 cut(s)	574, 807
MscI	TGGCCA	1 cut(s)	1848
MseI	TTAA	5 cut(s)	1314, 2114, 2309, 2466, 2850
MslI	CAYNNNNRTG	4 cut(s)	186, 221, 333, 2167
Msp20I	TGGCCA	1 cut(s)	1848
MspA1I	CMGCKG	1 cut(s)	322
MspCI	CTTAAG	1 cut(s)	2849
MspI	CCGG	2 cut(s)	41, 125
MspR9I	CCNGG	5 cut(s)	1307, 1321, 1377, 1868, 2268
MunI	CAATTG	4 cut(s)	95, 425, 554, 1944
Mva1269I	GAATGC	1 cut(s)	1457
MvaI	CCWGG	5 cut(s)	1307, 1321, 1377, 1868, 2268
MwoI	GCNNNNNNNGC	4 cut(s)	347, 1325, 1330, 1641
NcoI	CCATGG	1 cut(s)	1200
NdeII	GATC	7 cut(s)	225, 257, 922, 1254, 1748, 3140, 3182
NheI	GCTAGC	1 cut(s)	2233
NlaIV	GGNNCC	9 cut(s)	15, 45, 65, 259, 365, 1293, 1750, 2331, 2332
NmeAIII	GCCGAG	1 cut(s)	2753
NmuCI	GTSAC	9 cut(s)	19, 770, 821, 908, 916, 1691, 2096, 2938, 3095
NsiI	ATGCAT	2 cut(s)	1488, 2757
NspI	RCATGY	6 cut(s)	122, 1486, 1505, 1520, 2308, 2755
OliI	CACNNNNGTG	1 cut(s)	2167
PaeI	GCATGC	1 cut(s)	2755
PciI	ACATGT	2 cut(s)	1516, 2304
PciSI	GCTCTTC	1 cut(s)	1165
PctI	GAATGC	1 cut(s)	1457
PdmI	GAANNNNTTC	2 cut(s)	574, 807
PfoI	TCCNGGA	1 cut(s)	1375
PinAI	ACCGGT	1 cut(s)	124
PleI	GAGTC	6 cut(s)	16, 236, 440, 856, 1045, 1688
PpsI	GAGTC	6 cut(s)	16, 236, 440, 856, 1045, 1688
Ppu21I	YACGTR	1 cut(s)	1072
PpuMI	RGGWCCY	1 cut(s)	2330
PscI	ACATGT	2 cut(s)	1516, 2304
PshAI	GACNNNNGTC	1 cut(s)	684
Psp124BI	GAGCTC	1 cut(s)	1177
Psp5II	RGGWCCY	1 cut(s)	2330
Psp6I	CCWGG	5 cut(s)	1305, 1319, 1375, 1866, 2266
PspGI	CCWGG	5 cut(s)	1305, 1319, 1375, 1866, 2266
PspN4I	GGNNCC	9 cut(s)	15, 45, 65, 259, 365, 1293, 1750, 2331, 2332
PspPI	GGNCC	5 cut(s)	43, 363, 972, 1291, 2330
PspPPI	RGGWCCY	1 cut(s)	2330
PsuI	RGATCY	3 cut(s)	257, 1748, 3140
PvuII	CAGCTG	1 cut(s)	322
RsaI	GTAC	5 cut(s)	123, 1070, 1362, 1707, 1907
RsaNI	GTAC	5 cut(s)	122, 1069, 1361, 1706, 1906
RseI	CAYNNNNRTG	4 cut(s)	186, 221, 333, 2167
SacI	GAGCTC	1 cut(s)	1177
SapI	GCTCTTC	1 cut(s)	1165
SaqAI	TTAA	5 cut(s)	1314, 2114, 2309, 2466, 2850
Sau3AI	GATC	7 cut(s)	225, 257, 922, 1254, 1748, 3140, 3182
Sau96I	GGNCC	5 cut(s)	43, 363, 972, 1291, 2330
SchI	GAGTC	6 cut(s)	16, 236, 440, 857, 1046, 1688
ScrFI	CCNGG	5 cut(s)	1307, 1321, 1377, 1868, 2268
SduI	GDGCHC	2 cut(s)	647, 1177
SfcI	CTRYAG	1 cut(s)	1343
SinI	GGWCC	3 cut(s)	43, 1291, 2330
SmiMI	CAYNNNNRTG	4 cut(s)	186, 221, 333, 2167
SmlI	CTYRAG	7 cut(s)	153, 289, 672, 739, 1275, 2184, 2849
SmoI	CTYRAG	7 cut(s)	153, 289, 672, 739, 1275, 2184, 2849
SnaBI	TACGTA	1 cut(s)	1072
SphI	GCATGC	1 cut(s)	2755
SsiI	CCGC	5 cut(s)	938, 2342, 2658, 2846, 2910
SspI	AATATT	1 cut(s)	2028
SspMI	CTAG	7 cut(s)	135, 1041, 1632, 1809, 2234, 2991, 3196
SstI	GAGCTC	1 cut(s)	1177
StyD4I	CCNGG	5 cut(s)	1305, 1319, 1375, 1866, 2266
StyI	CCWWGG	4 cut(s)	436, 565, 975, 1200
TaaI	ACNGT	6 cut(s)	270, 686, 1774, 2326, 2546, 3129
TaiI	ACGT	3 cut(s)	1074, 3067, 3102
TaqI	TCGA	4 cut(s)	573, 953, 1768, 1896
Tru1I	TTAA	5 cut(s)	1314, 2114, 2309, 2466, 2850
Tru9I	TTAA	5 cut(s)	1314, 2114, 2309, 2466, 2850
TscAI	CASTG	6 cut(s)	24, 358, 1113, 1642, 2551, 3132
TseFI	GTSAC	9 cut(s)	19, 770, 821, 908, 916, 1691, 2096, 2938, 3095
Tsp45I	GTSAC	9 cut(s)	19, 770, 821, 908, 916, 1691, 2096, 2938, 3095
TspRI	CASTG	6 cut(s)	24, 358, 1113, 1642, 2551, 3132
Vha464I	CTTAAG	1 cut(s)	2849
VpaK11BI	GGWCC	3 cut(s)	43, 1291, 2330
XapI	RAATTY	7 cut(s)	475, 1180, 1264, 1495, 1892, 1964, 3120
XceI	RCATGY	6 cut(s)	122, 1486, 1505, 1520, 2308, 2755
XmnI	GAANNNNTTC	2 cut(s)	574, 807
XspI	CTAG	7 cut(s)	135, 1041, 1632, 1809, 2234, 2991, 3196
Zsp2I	ATGCAT	2 cut(s)	1488, 2757

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.