Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002428

Physical Location & Seq

Genomic Coordinates Forward (+)

24065606 .. 24068434

Gene Structure 2829 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ23979

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1320 bp

ATGAAGTTTGGAGGGGATTTTTCAGTTCCGGTGGATGAGGATTTTCGGTCCATGCCTCCTTGGGTACCGGTAACGCCTCAGAAGCCTCTTCCATTGAAACCTCACCCTATGCTGCTTAACCCCCACGGTAATCACCTACCAGCAGCAAATTGGCAACACGAATTGGGGAATGTACAATTGGGTGATACTTACAATGGCATGAGCCCAGCTATCAACCCAATTGTCCAGTTTCCTAGAAATGTTGGGTGTTATGGTGTTGATGGACGTCTGGCTCCGCAGAATGGAATGACAAATCACATTCCAGGTTCATACTCACAGTTGCTTGGCAGTGACAGCTCAAGTTGGAACAATGAATCCTTCACACAACTACTACTTCAGGATAATGCAGCTGCAGTTTACGTTGCCTCTGCAGACAGGAATCTTAGCAGAAGTGTTGACATAGCAGCAAATGCACCTCTAACTCCTAAGTTGCATCCTCAAGTGGCCAACCAAAGAAACAATTCAAGTAGTTTCTTGCTGACCAACCAAAATTGCAACAATGGTTCATACCCTTCGAGTGCGGTGATGAGCAGGCGCACGGTTGTGGATTTCCCTTCTCTGTTTGATAACAGTCAGGGGCATTCCAATGTAGCTAATTGGTTGCTTAACAACGAAAATCACAGCTCAAGTTCAAACTTGTTGAGTAATGGTCACAGCTCACCCCATATAAGCCAGAATGTTTTCCCCATGCCCTTGCGACCGAGCTATGATCTAAACTTAAACTCCTCACCGAGAACAGAAGCCGATACTACTTCATGTGTTCCCAGCCAACTCCAATTCACACCATATAGGGCCAATCGTATGGAGAACAACCGTCTTTCGGCAATACAAACATCCTTGACAGATGAAAGCTCTAGCAAGGAAAACGACAAGCAGGTGGACTTTTTCACGTCTACAGGAGATGTAGCAATTCAGAAACATGGTGGAGAACTCTTGCAGAATATCGTGGAGTCAGCTTCTGCAACCATTTCTACACCATACAAGGAAAATAAAGATTCTGACCATGAAAGTGACAGAGGGATTGATCTAAACCAGACAGCCCAGCACAAAACACCCAAGAGAAGGAAGCACAGGCCAAAAGTAATCATAGAAGGCAAAACCAAAAGGACTCCAAAGCCTGCAACTGCAAAGAATGCAGAGCCTAAGGAGTCCCGAACAGGAAAGAGGAAATACGTTAGAAAGAATGTCCAAAAGGAATCGTCAAGTCAACTGGTAGATGGTACGAGTGAAGCAACATACCATAATGCTGGAATAGCTGCAAATCATGCAGGAGAGTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0003906 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006349 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010468 GO:0016787 GO:0016798 GO:0016799 GO:0019104 GO:0019222 GO:0022414 GO:0032259 GO:0032501 GO:0032502 GO:0034641 GO:0040029 GO:0043076 GO:0043078 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0044728 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0060255 GO:0061458 GO:0065007 GO:0071514 GO:0071704 GO:0090304 GO:0140097 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Perm-CXXC RRM_DME

Protein Analysis

439

Amino Acids

48.21

Weight (kDa)

8.59

Isoelectric Point (pI)

47.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002428)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04560 AT5G04560 AT5G04560
fragaria_vesca	FvH4_2g10170 FvH4_2g10170 FvH4_2g10170 FvH4_2g10170 FvH4_2g10170
malus_domestica	MD02G1245300.v1.1 MD07G1071800.v1.1 MD09G1259000.v1.1 MD09G1259100.v1.1 MD17G1253500.v1.1 MD17G1253600.v1.1
prunus_persica	Prupe.2G089400_v2.0.a1 Prupe.7G005000_v2.0.a1 Prupe.7G005000_v2.0.a1 Prupe.7G005000_v2.0.a1 Prupe.7G005000_v2.0.a1 Prupe.7G005000_v2.0.a1 Prupe.7G005000_v2.0.a1
pyrus_communis	pycom02g21110 pycom09g17380 pycom17g25620 pycom17g25630
rosa_chinensis	RchiOBHm_Chr6g0267351 RchiOBHm_Chr6g0267361
rosa_laevigata	RLG00000014013
rosa_multiflora	Rmu_sc0000746.1_g000002 Rmu_sc0019664.1_g000001
rosa_roxburghii	Rroxscaffold_7G00200830
rosa_rugosa	Rorug06G0031600 Rorug06G0031700 Rorug06G0031800 Rorug06G0031900 Rorug06G0032000
rosa_samantha	Rh6AG153500 Rh6BG153200 Rh6CG149300 Rh6DG137600
rosa_wichuraiana	Rw6G013200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	904
AatII	GACGTC	1 cut(s)	268
Acc36I	ACCTGC	1 cut(s)	904
Acc65I	GGTACC	1 cut(s)	64
AccB1I	GGYRCC	1 cut(s)	64
AccI	GTMKAC	1 cut(s)	932
AciI	CCGC	2 cut(s)	275, 560
AcoI	YGGCCR	1 cut(s)	483
AcuI	CTGAAG	1 cut(s)	359
AcyI	GRCGYC	1 cut(s)	265
AfaI	GTAC	3 cut(s)	66, 174, 1261
AfiI	CCNNNNNNNGG	3 cut(s)	281, 859, 1101
AgeI	ACCGGT	1 cut(s)	67
AgsI	TTSAA	3 cut(s)	97, 504, 672
AjiI	CACGTC	1 cut(s)	930
AjnI	CCWGG	1 cut(s)	301
AjuI	GAANNNNNNNTTGG	2 cut(s)	161, 193
AleI	CACNNNNGTG	1 cut(s)	581
AloI	GAACNNNNNNTCC	2 cut(s)	338, 370
AlwNI	CAGNNNCTG	1 cut(s)	998
AoxI	GGCC	3 cut(s)	483, 831, 1112
ApeKI	GCWGC	6 cut(s)	112, 143, 386, 389, 443, 1295
AsiGI	ACCGGT	1 cut(s)	67
Asp700I	GAANNNNTTC	2 cut(s)	499, 719
Asp718I	GGTACC	1 cut(s)	64
AspLEI	GCGC	1 cut(s)	576
AspS9I	GGNCC	2 cut(s)	48, 831
AsuHPI	GGTGA	6 cut(s)	95, 125, 194, 574, 690, 759
AvaII	GGWCC	1 cut(s)	48
AxyI	CCTNAGG	1 cut(s)	1182
BalI	TGGCCA	1 cut(s)	485
BanI	GGYRCC	1 cut(s)	64
BanII	GRGCYC	1 cut(s)	206
BbvI	GCAGC	6 cut(s)	99, 155, 376, 398, 455, 1282
BccI	CCATC	2 cut(s)	254, 1250
BciT130I	CCWGG	1 cut(s)	303
BfaI	CTAG	3 cut(s)	234, 894, 1318
BfmI	CTRYAG	3 cut(s)	390, 408, 933
BfuAI	ACCTGC	1 cut(s)	904
BisI	GCNGC	6 cut(s)	113, 144, 387, 390, 444, 1296
BlsI	GCNGC	6 cut(s)	114, 145, 388, 391, 445, 1297
Bme1390I	CCNGG	1 cut(s)	303
Bme18I	GGWCC	1 cut(s)	48
BmgBI	CACGTC	1 cut(s)	930
BmgT120I	GGNCC	2 cut(s)	48, 831
BmiI	GGNNCC	2 cut(s)	66, 273
BmrFI	CCNGG	1 cut(s)	303
BmsI	GCATC	1 cut(s)	481
BpuEI	CTTGAG	3 cut(s)	322, 462, 649
BsaHI	GRCGYC	1 cut(s)	265
BsaJI	CCNNGG	2 cut(s)	59, 124
BsaWI	WCCGGW	2 cut(s)	28, 67
BsaXI	ACNNNNNCTCC	2 cut(s)	746, 776
Bsc4I	CCNNNNNNNGG	3 cut(s)	281, 859, 1101
Bse118I	RCCGGY	1 cut(s)	67
Bse1I	ACTGG	2 cut(s)	226, 1254
Bse21I	CCTNAGG	1 cut(s)	1182
BseBI	CCWGG	1 cut(s)	303
BseDI	CCNNGG	2 cut(s)	59, 124
BseGI	GGATG	3 cut(s)	40, 472, 872
BseLI	CCNNNNNNNGG	3 cut(s)	281, 859, 1101
BseMII	CTCAG	1 cut(s)	92
BseNI	ACTGG	2 cut(s)	226, 1254
BseRI	GAGGAG	1 cut(s)	754
BseXI	GCAGC	6 cut(s)	99, 155, 376, 398, 455, 1282
BseYI	CCCAGC	3 cut(s)	205, 803, 1080
Bsh1285I	CGRYCG	1 cut(s)	740
BshFI	GGCC	3 cut(s)	485, 833, 1114
BshNI	GGYRCC	1 cut(s)	64
BshTI	ACCGGT	1 cut(s)	67
BsiEI	CGRYCG	1 cut(s)	740
BsiSI	CCGG	2 cut(s)	29, 68
BslFI	GGGAC	1 cut(s)	1174
BslI	CCNNNNNNNGG	3 cut(s)	281, 859, 1101
BsmFI	GGGAC	1 cut(s)	1174
BsmI	GAATGC	2 cut(s)	619, 1177
BsnI	GGCC	3 cut(s)	485, 833, 1114
Bsp1286I	GDGCHC	1 cut(s)	206
Bsp1407I	TGTACA	1 cut(s)	172
Bsp143I	GATC	2 cut(s)	748, 1063
BspACI	CCGC	2 cut(s)	275, 560
BspANI	GGCC	3 cut(s)	485, 833, 1114
BspCNI	CTCAG	1 cut(s)	91
BspLI	GGNNCC	2 cut(s)	66, 273
BspMAI	CTGCAG	2 cut(s)	394, 412
BspMI	ACCTGC	1 cut(s)	904
BspT107I	GGYRCC	1 cut(s)	64
BsrFI	RCCGGY	1 cut(s)	67
BsrGI	TGTACA	1 cut(s)	172
BsrI	ACTGG	2 cut(s)	226, 1254
BssAI	RCCGGY	1 cut(s)	67
BssECI	CCNNGG	2 cut(s)	59, 124
BssMI	GATC	2 cut(s)	748, 1063
BssNI	GRCGYC	1 cut(s)	265
BssT1I	CCWWGG	1 cut(s)	59
Bst2UI	CCWGG	1 cut(s)	303
Bst4CI	ACNGT	5 cut(s)	128, 318, 580, 611, 854
Bst6I	CTCTTC	1 cut(s)	93
BstACI	GRCGYC	1 cut(s)	265
BstAPI	GCANNNNNTGC	3 cut(s)	449, 1172, 1304
BstAUI	TGTACA	1 cut(s)	172
BstC8I	GCNNGC	2 cut(s)	572, 1158
BstDEI	CTNAG	4 cut(s)	78, 422, 465, 1182
BstDSI	CCRYGG	1 cut(s)	124
BstF5I	GGATG	3 cut(s)	40, 472, 872
BstHHI	GCGC	1 cut(s)	576
BstKTI	GATC	2 cut(s)	751, 1066
BstMBI	GATC	2 cut(s)	748, 1063
BstMCI	CGRYCG	1 cut(s)	740
BstMWI	GCNNNNNNNGC	6 cut(s)	82, 333, 449, 1172, 1292, 1304
BstNI	CCWGG	1 cut(s)	303
BstSCI	CCNGG	1 cut(s)	301
BstSFI	CTRYAG	3 cut(s)	390, 408, 933
BstV1I	GCAGC	6 cut(s)	99, 155, 376, 398, 455, 1282
BstXI	CCANNNNNNTGG	2 cut(s)	841, 1286
Bsu36I	CCTNAGG	1 cut(s)	1182
BsuRI	GGCC	3 cut(s)	485, 833, 1114
BtgI	CCRYGG	1 cut(s)	124
BtrI	CACGTC	1 cut(s)	930
BtsCI	GGATG	3 cut(s)	40, 472, 872
BtsI	GCAGTG	1 cut(s)	334
BtsIMutI	CAGTG	1 cut(s)	334
BveI	ACCTGC	1 cut(s)	904
Cac8I	GCNNGC	2 cut(s)	572, 1158
CaiI	CAGNNNCTG	1 cut(s)	998
CfoI	GCGC	1 cut(s)	576
Cfr10I	RCCGGY	1 cut(s)	67
Cfr13I	GGNCC	2 cut(s)	48, 831
Csp6I	GTAC	3 cut(s)	65, 173, 1260
CspAI	ACCGGT	1 cut(s)	67
CviAII	CATG	7 cut(s)	52, 199, 727, 795, 959, 1043, 1304
CviQI	GTAC	3 cut(s)	65, 173, 1260
DdeI	CTNAG	4 cut(s)	78, 422, 465, 1182
DpnI	GATC	2 cut(s)	750, 1065
DpnII	GATC	2 cut(s)	748, 1063
EaeI	YGGCCR	1 cut(s)	483
Eam1104I	CTCTTC	1 cut(s)	93
EarI	CTCTTC	1 cut(s)	93
Eco130I	CCWWGG	1 cut(s)	59
Eco24I	GRGCYC	1 cut(s)	206
Eco47I	GGWCC	1 cut(s)	48
Eco57I	CTGAAG	1 cut(s)	359
Eco81I	CCTNAGG	1 cut(s)	1182
EcoRII	CCWGG	1 cut(s)	301
EcoT14I	CCWWGG	1 cut(s)	59
EcoT38I	GRGCYC	1 cut(s)	206
ErhI	CCWWGG	1 cut(s)	59
FaeI	CATG	7 cut(s)	55, 202, 730, 798, 962, 1046, 1307
FaqI	GGGAC	1 cut(s)	1174
FatI	CATG	7 cut(s)	51, 198, 726, 794, 958, 1042, 1303
FblI	GTMKAC	1 cut(s)	932
Fnu4HI	GCNGC	6 cut(s)	113, 144, 387, 390, 444, 1296
FokI	GGATG	3 cut(s)	47, 459, 859
FriOI	GRGCYC	1 cut(s)	206
Fsp4HI	GCNGC	6 cut(s)	113, 144, 387, 390, 444, 1296
FspBI	CTAG	3 cut(s)	234, 894, 1318
GlaI	GCGC	1 cut(s)	575
GluI	GCNGC	6 cut(s)	113, 144, 387, 390, 444, 1296
GsaI	CCCAGC	3 cut(s)	209, 807, 1084
HaeIII	GGCC	3 cut(s)	485, 833, 1114
HapII	CCGG	2 cut(s)	29, 68
HhaI	GCGC	1 cut(s)	576
Hin1I	GRCGYC	1 cut(s)	265
Hin1II	CATG	7 cut(s)	55, 202, 730, 798, 962, 1046, 1307
Hin6I	GCGC	1 cut(s)	574
HinP1I	GCGC	1 cut(s)	574
HincII	GTYRAC	2 cut(s)	436, 1247
HindII	GTYRAC	2 cut(s)	436, 1247
HinfI	GANTC	7 cut(s)	353, 418, 989, 1034, 1147, 1187, 1235
HpaII	CCGG	2 cut(s)	29, 68
HphI	GGTGA	6 cut(s)	95, 125, 194, 574, 690, 759
Hpy166II	GTNNAC	5 cut(s)	397, 436, 919, 933, 1247
Hpy188I	TCNGA	3 cut(s)	81, 954, 1039
Hpy188III	TCNNGA	2 cut(s)	377, 1191
Hpy8I	GTNNAC	5 cut(s)	397, 436, 919, 933, 1247
HpyAV	CCTTC	5 cut(s)	367, 561, 603, 1095, 1124
HpyCH4III	ACNGT	5 cut(s)	128, 318, 580, 611, 854
HpyCH4IV	ACGT	4 cut(s)	265, 399, 929, 1212
HpyF10VI	GCNNNNNNNGC	6 cut(s)	82, 333, 449, 1172, 1292, 1304
HpyF3I	CTNAG	4 cut(s)	78, 422, 465, 1182
HpySE526I	ACGT	4 cut(s)	265, 399, 929, 1212
Hsp92I	GRCGYC	1 cut(s)	265
Hsp92II	CATG	7 cut(s)	55, 202, 730, 798, 962, 1046, 1307
HspAI	GCGC	1 cut(s)	574
KpnI	GGTACC	1 cut(s)	68
Kzo9I	GATC	2 cut(s)	748, 1063
LmnI	GCTCC	1 cut(s)	277
Lsp1109I	GCAGC	6 cut(s)	99, 155, 376, 398, 455, 1282
LweI	GCATC	1 cut(s)	481
MaeI	CTAG	3 cut(s)	234, 894, 1318
MaeII	ACGT	4 cut(s)	265, 399, 929, 1212
MaeIII	GTNAC	4 cut(s)	70, 329, 689, 1049
MalI	GATC	2 cut(s)	750, 1065
MboI	GATC	2 cut(s)	748, 1063
MboII	GAAGA	1 cut(s)	80
MfeI	CAATTG	2 cut(s)	176, 219
MhlI	GDGCHC	1 cut(s)	206
MlsI	TGGCCA	1 cut(s)	485
MluCI	AATT	9 cut(s)	148, 161, 176, 219, 499, 529, 634, 815, 948
MluNI	TGGCCA	1 cut(s)	485
MlyI	GAGTC	3 cut(s)	998, 1141, 1196
MmeI	TCCRAC	1 cut(s)	323
Mox20I	TGGCCA	1 cut(s)	485
MroXI	GAANNNNTTC	2 cut(s)	499, 719
MscI	TGGCCA	1 cut(s)	485
MseI	TTAA	3 cut(s)	117, 645, 758
MslI	CAYNNNNRTG	3 cut(s)	581, 624, 1047
Msp20I	TGGCCA	1 cut(s)	485
MspA1I	CMGCKG	1 cut(s)	389
MspI	CCGG	2 cut(s)	29, 68
MspR9I	CCNGG	1 cut(s)	303
MunI	CAATTG	2 cut(s)	176, 219
Mva1269I	GAATGC	2 cut(s)	619, 1177
MvaI	CCWGG	1 cut(s)	303
MwoI	GCNNNNNNNGC	6 cut(s)	82, 333, 449, 1172, 1292, 1304
NdeII	GATC	2 cut(s)	748, 1063
NlaIII	CATG	7 cut(s)	55, 202, 730, 798, 962, 1046, 1307
NlaIV	GGNNCC	2 cut(s)	66, 273
NmuCI	GTSAC	3 cut(s)	329, 689, 1049
OliI	CACNNNNGTG	1 cut(s)	581
PaqCI	CACCTGC	1 cut(s)	904
PctI	GAATGC	2 cut(s)	619, 1177
PdmI	GAANNNNTTC	2 cut(s)	499, 719
PfeI	GAWTC	4 cut(s)	353, 418, 1034, 1235
PinAI	ACCGGT	1 cut(s)	67
PkrI	GCNGC	6 cut(s)	114, 145, 388, 391, 445, 1297
PleI	GAGTC	3 cut(s)	997, 1141, 1195
PpsI	GAGTC	3 cut(s)	997, 1141, 1195
Psp6I	CCWGG	1 cut(s)	301
PspFI	CCCAGC	3 cut(s)	205, 803, 1080
PspGI	CCWGG	1 cut(s)	301
PspN4I	GGNNCC	2 cut(s)	66, 273
PspPI	GGNCC	2 cut(s)	48, 831
PstI	CTGCAG	2 cut(s)	394, 412
PstNI	CAGNNNCTG	1 cut(s)	998
PvuII	CAGCTG	1 cut(s)	389
RsaI	GTAC	3 cut(s)	66, 174, 1261
RsaNI	GTAC	3 cut(s)	65, 173, 1260
RseI	CAYNNNNRTG	3 cut(s)	581, 624, 1047
SaqAI	TTAA	3 cut(s)	117, 645, 758
SatI	GCNGC	6 cut(s)	113, 144, 387, 390, 444, 1296
Sau3AI	GATC	2 cut(s)	748, 1063
Sau96I	GGNCC	2 cut(s)	48, 831
SchI	GAGTC	3 cut(s)	998, 1141, 1196
ScrFI	CCNGG	1 cut(s)	303
SduI	GDGCHC	1 cut(s)	206
SfaNI	GCATC	1 cut(s)	481
SfcI	CTRYAG	3 cut(s)	390, 408, 933
SinI	GGWCC	1 cut(s)	48
SmiMI	CAYNNNNRTG	3 cut(s)	581, 624, 1047
SmlI	CTYRAG	3 cut(s)	337, 477, 664
SmoI	CTYRAG	3 cut(s)	337, 477, 664
Sse9I	AATT	9 cut(s)	148, 161, 176, 219, 499, 529, 634, 815, 948
SsiI	CCGC	2 cut(s)	275, 560
SspMI	CTAG	3 cut(s)	234, 894, 1318
StyD4I	CCNGG	1 cut(s)	301
StyI	CCWWGG	1 cut(s)	59
TaaI	ACNGT	5 cut(s)	128, 318, 580, 611, 854
TaiI	ACGT	4 cut(s)	268, 402, 932, 1215
TaqI	TCGA	1 cut(s)	554
TaqII	GACCGA	2 cut(s)	36, 754
TasI	AATT	9 cut(s)	148, 161, 176, 219, 499, 529, 634, 815, 948
TatI	WGTACW	1 cut(s)	172
TfiI	GAWTC	4 cut(s)	353, 418, 1034, 1235
Tru1I	TTAA	3 cut(s)	117, 645, 758
Tru9I	TTAA	3 cut(s)	117, 645, 758
TscAI	CASTG	1 cut(s)	334
TseFI	GTSAC	3 cut(s)	329, 689, 1049
TseI	GCWGC	6 cut(s)	112, 143, 386, 389, 443, 1295
Tsp45I	GTSAC	3 cut(s)	329, 689, 1049
TspDTI	ATGAA	7 cut(s)	17, 297, 366, 534, 783, 900, 1059
TspRI	CASTG	1 cut(s)	334
VpaK11BI	GGWCC	1 cut(s)	48
XcmI	CCANNNNNNNNNTGG	1 cut(s)	147
XmiI	GTMKAC	1 cut(s)	932
XmnI	GAANNNNTTC	2 cut(s)	499, 719
XspI	CTAG	3 cut(s)	234, 894, 1318
ZraI	GACGTC	1 cut(s)	266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.