Transcriptional activator
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G04560 AT5G04560 AT5G04560 |
| fragaria_vesca | FvH4_2g10170 FvH4_2g10170 FvH4_2g10170 FvH4_2g10170 FvH4_2g10170 |
| malus_domestica | MD02G1245300.v1.1 MD07G1071800.v1.1 MD09G1259000.v1.1 MD09G1259100.v1.1 MD17G1253500.v1.1 MD17G1253600.v1.1 |
| prunus_persica | Prupe.2G089400_v2.0.a1 Prupe.7G005000_v2.0.a1 Prupe.7G005000_v2.0.a1 Prupe.7G005000_v2.0.a1 Prupe.7G005000_v2.0.a1 Prupe.7G005000_v2.0.a1 Prupe.7G005000_v2.0.a1 |
| pyrus_communis | pycom02g21110 pycom09g17380 pycom17g25620 pycom17g25630 |
| rosa_chinensis | RchiOBHm_Chr6g0267351 RchiOBHm_Chr6g0267361 |
| rosa_laevigata | RLG00000014013 |
| rosa_multiflora | Rmu_sc0000746.1_g000002 Rmu_sc0019664.1_g000001 |
| rosa_roxburghii | Rroxscaffold_7G00200830 |
| rosa_rugosa | Rorug06G0031600 Rorug06G0031700 Rorug06G0031800 Rorug06G0031900 Rorug06G0032000 |
| rosa_samantha | Rh6AG153500 Rh6BG153200 Rh6CG149300 Rh6DG137600 |
| rosa_wichuraiana | Rw6G013200 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 2921 |
| AarI | CACCTGC | 3 cut(s) | 421, 2839, 4008 |
| Acc36I | ACCTGC | 4 cut(s) | 421, 2431, 2839, 4008 |
| AccB1I | GGYRCC | 2 cut(s) | 380, 1956 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 109, 4163 |
| AccBSI | CCGCTC | 1 cut(s) | 1952 |
| AccI | GTMKAC | 2 cut(s) | 1446, 3865 |
| AccII | CGCG | 1 cut(s) | 2523 |
| AciI | CCGC | 4 cut(s) | 1124, 1604, 1950, 2521 |
| AcoI | YGGCCR | 4 cut(s) | 292, 529, 2856, 3290 |
| AcsI | RAATTY | 9 cut(s) | 724, 856, 1205, 1850, 2230, 2569, 2991, 3635, 3994 |
| AcuI | CTGAAG | 4 cut(s) | 1401, 1734, 2332, 3557 |
| AcyI | GRCGYC | 1 cut(s) | 1957 |
| AdeI | CACNNNGTG | 3 cut(s) | 3656, 3886, 3983 |
| AflIII | ACRYGT | 2 cut(s) | 914, 3792 |
| AjnI | CCWGG | 7 cut(s) | 127, 294, 507, 1799, 2069, 2608, 3979 |
| AleI | CACNNNNGTG | 2 cut(s) | 502, 2463 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1123, 1155 |
| Alw21I | GWGCWC | 4 cut(s) | 2414, 2449, 3448, 3882 |
| Alw26I | GTCTC | 7 cut(s) | 100, 207, 506, 934, 1779, 1787, 1927 |
| AlwNI | CAGNNNCTG | 4 cut(s) | 109, 2372, 2854, 3827 |
| ApoI | RAATTY | 9 cut(s) | 724, 856, 1205, 1850, 2230, 2569, 2991, 3635, 3994 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2467, 2499 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 2604, 3126 |
| AspLEI | GCGC | 3 cut(s) | 1222, 1959, 4384 |
| AspS9I | GGNCC | 5 cut(s) | 131, 1385, 1943, 3205, 3464 |
| AsuC2I | CCSGG | 2 cut(s) | 3161, 3462 |
| AsuHPI | GGTGA | 7 cut(s) | 116, 353, 402, 1616, 3137, 3800, 3995 |
| AsuNHI | GCTAGC | 1 cut(s) | 2980 |
| AvaII | GGWCC | 3 cut(s) | 1385, 1943, 3205 |
| BaeGI | GKGCMC | 1 cut(s) | 3063 |
| BaeI | ACNNNNGTAYC | 6 cut(s) | 766, 799, 2207, 2240, 3159, 3192 |
| BalI | TGGCCA | 3 cut(s) | 294, 531, 3292 |
| BamHI | GGATCC | 5 cut(s) | 431, 2066, 2434, 3694, 4320 |
| BanI | GGYRCC | 2 cut(s) | 380, 1956 |
| BanII | GRGCYC | 1 cut(s) | 2414 |
| BbsI | GAAGAC | 4 cut(s) | 362, 1092, 3672, 4064 |
| Bbv12I | GWGCWC | 4 cut(s) | 2414, 2449, 3448, 3882 |
| BceAI | ACGGC | 3 cut(s) | 305, 601, 1319 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 2880, 2914, 3406, 3440 |
| BciT130I | CCWGG | 7 cut(s) | 129, 296, 509, 1801, 2071, 2610, 3981 |
| BciVI | GTATCC | 1 cut(s) | 1030 |
| BclI | TGATCA | 2 cut(s) | 1087, 3310 |
| BcnI | CCSGG | 2 cut(s) | 3161, 3462 |
| BcoDI | GTCTC | 7 cut(s) | 100, 207, 506, 934, 1779, 1787, 1927 |
| BfaI | CTAG | 7 cut(s) | 33, 77, 417, 492, 2981, 3248, 4209 |
| BfmI | CTRYAG | 6 cut(s) | 189, 807, 1899, 2694, 3498, 3504 |
| BfoI | RGCGCY | 2 cut(s) | 1960, 4385 |
| BfuAI | ACCTGC | 4 cut(s) | 421, 2431, 2839, 4008 |
| BfuI | GTATCC | 1 cut(s) | 1030 |
| BlpI | GCTNAGC | 2 cut(s) | 63, 2985 |
| BmcAI | AGTACT | 2 cut(s) | 2401, 4328 |
| Bme1390I | CCNGG | 9 cut(s) | 129, 296, 509, 1801, 2071, 2610, 3161, 3462, 3981 |
| Bme18I | GGWCC | 3 cut(s) | 1385, 1943, 3205 |
| BmgT120I | GGNCC | 5 cut(s) | 131, 1385, 1943, 3205, 3464 |
| BmrFI | CCNGG | 9 cut(s) | 129, 296, 509, 1801, 2071, 2610, 3161, 3462, 3981 |
| BmrI | ACTGGG | 1 cut(s) | 2839 |
| BmsI | GCATC | 6 cut(s) | 667, 1194, 1687, 2878, 3042, 3252 |
| BmtI | GCTAGC | 1 cut(s) | 2984 |
| BmuI | ACTGGG | 1 cut(s) | 2839 |
| BpiI | GAAGAC | 4 cut(s) | 362, 1092, 3672, 4064 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1307, 1339 |
| BpmI | CTGGAG | 5 cut(s) | 1755, 2256, 3218, 3287, 3546 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 63, 2985 |
| BpuEI | CTTGAG | 6 cut(s) | 861, 1848, 1875, 2400, 2446, 3836 |
| BpuMI | CCSGG | 2 cut(s) | 3161, 3462 |
| Bsa29I | ATCGAT | 3 cut(s) | 592, 1168, 3036 |
| BsaBI | GATNNNNATC | 3 cut(s) | 531, 1909, 3906 |
| BsaHI | GRCGYC | 1 cut(s) | 1957 |
| BsaI | GGTCTC | 1 cut(s) | 1927 |
| BsaJI | CCNNGG | 9 cut(s) | 127, 1301, 1435, 1881, 2310, 3025, 3461, 3798, 4232 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1907, 1937, 3222, 3252 |
| Bse1I | ACTGG | 5 cut(s) | 114, 786, 1662, 2834, 4324 |
| Bse3DI | GCAATG | 6 cut(s) | 1207, 1455, 2506, 2898, 4057, 4146 |
| Bse8I | GATNNNNATC | 3 cut(s) | 531, 1909, 3906 |
| BseBI | CCWGG | 7 cut(s) | 129, 296, 509, 1801, 2071, 2610, 3981 |
| BseCI | ATCGAT | 3 cut(s) | 592, 1168, 3036 |
| BseDI | CCNNGG | 9 cut(s) | 127, 1301, 1435, 1881, 2310, 3025, 3461, 3798, 4232 |
| BseGI | GGATG | 9 cut(s) | 304, 532, 603, 1159, 2973, 3206, 3907, 3930, 4244 |
| BseJI | GATNNNNATC | 3 cut(s) | 531, 1909, 3906 |
| BseMI | GCAATG | 6 cut(s) | 1207, 1455, 2506, 2898, 4057, 4146 |
| BseMII | CTCAG | 8 cut(s) | 807, 998, 1172, 1338, 1536, 2464, 2976, 3501 |
| BseNI | ACTGG | 5 cut(s) | 114, 786, 1662, 2834, 4324 |
| BseRI | GAGGAG | 5 cut(s) | 225, 653, 1870, 3485, 3704 |
| BseSI | GKGCMC | 1 cut(s) | 3063 |
| BseYI | CCCAGC | 1 cut(s) | 2495 |
| BsgI | GTGCAG | 4 cut(s) | 532, 1275, 3352, 3436 |
| Bsh1236I | CGCG | 1 cut(s) | 2523 |
| BshNI | GGYRCC | 2 cut(s) | 380, 1956 |
| BshVI | ATCGAT | 3 cut(s) | 592, 1168, 3036 |
| BsiHKAI | GWGCWC | 4 cut(s) | 2414, 2449, 3448, 3882 |
| BsiSI | CCGG | 3 cut(s) | 2679, 3161, 3461 |
| BslFI | GGGAC | 5 cut(s) | 1496, 1660, 2624, 3191, 4126 |
| BsmAI | GTCTC | 7 cut(s) | 100, 207, 506, 934, 1779, 1787, 1927 |
| BsmFI | GGGAC | 5 cut(s) | 1496, 1660, 2624, 3191, 4126 |
| BsmI | GAATGC | 1 cut(s) | 1680 |
| Bso31I | GGTCTC | 1 cut(s) | 1927 |
| Bsp1286I | GDGCHC | 5 cut(s) | 2414, 2449, 3063, 3448, 3882 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 63, 2985 |
| Bsp19I | CCATGG | 1 cut(s) | 3025 |
| BspACI | CCGC | 4 cut(s) | 1124, 1604, 1950, 2521 |
| BspCNI | CTCAG | 8 cut(s) | 808, 997, 1173, 1337, 1535, 2463, 2977, 3502 |
| BspDI | ATCGAT | 3 cut(s) | 592, 1168, 3036 |
| BspFNI | CGCG | 1 cut(s) | 2523 |
| BspMAI | CTGCAG | 3 cut(s) | 193, 1903, 3502 |
| BspMI | ACCTGC | 4 cut(s) | 421, 2431, 2839, 4008 |
| BspOI | GCTAGC | 1 cut(s) | 2984 |
| BspT107I | GGYRCC | 2 cut(s) | 380, 1956 |
| BspTNI | GGTCTC | 1 cut(s) | 1927 |
| BsrBI | CCGCTC | 1 cut(s) | 1952 |
| BsrDI | GCAATG | 6 cut(s) | 1207, 1455, 2506, 2898, 4057, 4146 |
| BsrI | ACTGG | 5 cut(s) | 114, 786, 1662, 2834, 4324 |
| BssECI | CCNNGG | 9 cut(s) | 127, 1301, 1435, 1881, 2310, 3025, 3461, 3798, 4232 |
| BssNI | GRCGYC | 1 cut(s) | 1957 |
| BssT1I | CCWWGG | 5 cut(s) | 1435, 2310, 3025, 3798, 4232 |
| Bst2UI | CCWGG | 7 cut(s) | 129, 296, 509, 1801, 2071, 2610, 3981 |
| Bst6I | CTCTTC | 3 cut(s) | 646, 3470, 4440 |
| BstACI | GRCGYC | 1 cut(s) | 1957 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 677, 976, 4202 |
| BstDSI | CCRYGG | 2 cut(s) | 1301, 3025 |
| BstF5I | GGATG | 9 cut(s) | 304, 532, 603, 1159, 2973, 3206, 3907, 3930, 4244 |
| BstFNI | CGCG | 1 cut(s) | 2523 |
| BstH2I | RGCGCY | 2 cut(s) | 1960, 4385 |
| BstHHI | GCGC | 3 cut(s) | 1222, 1959, 4384 |
| BstMAI | GTCTC | 7 cut(s) | 100, 207, 506, 934, 1779, 1787, 1927 |
| BstNI | CCWGG | 7 cut(s) | 129, 296, 509, 1801, 2071, 2610, 3981 |
| BstSCI | CCNGG | 9 cut(s) | 127, 294, 507, 1799, 2069, 2608, 3159, 3460, 3979 |
| BstSFI | CTRYAG | 6 cut(s) | 189, 807, 1899, 2694, 3498, 3504 |
| BstSLI | GKGCMC | 1 cut(s) | 3063 |
| BstUI | CGCG | 1 cut(s) | 2523 |
| BstV2I | GAAGAC | 4 cut(s) | 362, 1092, 3672, 4064 |
| BstX2I | RGATCY | 6 cut(s) | 431, 2066, 2434, 3694, 3775, 4320 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 1030, 4239 |
| BstYI | RGATCY | 6 cut(s) | 431, 2066, 2434, 3694, 3775, 4320 |
| Bsu15I | ATCGAT | 3 cut(s) | 592, 1168, 3036 |
| BsuI | GTATCC | 1 cut(s) | 1030 |
| BsuTUI | ATCGAT | 3 cut(s) | 592, 1168, 3036 |
| BtgI | CCRYGG | 2 cut(s) | 1301, 3025 |
| BtsCI | GGATG | 9 cut(s) | 304, 532, 603, 1159, 2973, 3206, 3907, 3930, 4244 |
| BtsI | GCAGTG | 1 cut(s) | 198 |
| BveI | ACCTGC | 4 cut(s) | 421, 2431, 2839, 4008 |
| CaiI | CAGNNNCTG | 4 cut(s) | 109, 2372, 2854, 3827 |
| CfoI | GCGC | 3 cut(s) | 1222, 1959, 4384 |
| Cfr13I | GGNCC | 5 cut(s) | 131, 1385, 1943, 3205, 3464 |
| ClaI | ATCGAT | 3 cut(s) | 592, 1168, 3036 |
| CsiI | ACCWGGT | 1 cut(s) | 3979 |
| DinI | GGCGCC | 1 cut(s) | 1958 |
| DraI | TTTAAA | 1 cut(s) | 622 |
| DraIII | CACNNNGTG | 3 cut(s) | 3656, 3886, 3983 |
| EaeI | YGGCCR | 4 cut(s) | 292, 529, 2856, 3290 |
| Eam1104I | CTCTTC | 3 cut(s) | 646, 3470, 4440 |
| EarI | CTCTTC | 3 cut(s) | 646, 3470, 4440 |
| Ecl136II | GAGCTC | 1 cut(s) | 2412 |
| Eco130I | CCWWGG | 5 cut(s) | 1435, 2310, 3025, 3798, 4232 |
| Eco24I | GRGCYC | 1 cut(s) | 2414 |
| Eco31I | GGTCTC | 1 cut(s) | 1927 |
| Eco32I | GATATC | 1 cut(s) | 2011 |
| Eco47I | GGWCC | 3 cut(s) | 1385, 1943, 3205 |
| Eco53kI | GAGCTC | 1 cut(s) | 2412 |
| Eco57I | CTGAAG | 4 cut(s) | 1401, 1734, 2332, 3557 |
| EcoICRI | GAGCTC | 1 cut(s) | 2412 |
| EcoO109I | RGGNCCY | 3 cut(s) | 1385, 1943, 3205 |
| EcoRI | GAATTC | 4 cut(s) | 724, 856, 2991, 3635 |
| EcoRII | CCWGG | 7 cut(s) | 127, 294, 507, 1799, 2069, 2608, 3979 |
| EcoRV | GATATC | 1 cut(s) | 2011 |
| EcoT14I | CCWWGG | 5 cut(s) | 1435, 2310, 3025, 3798, 4232 |
| EcoT22I | ATGCAT | 1 cut(s) | 1682 |
| EcoT38I | GRGCYC | 1 cut(s) | 2414 |
| EgeI | GGCGCC | 1 cut(s) | 1958 |
| EheI | GGCGCC | 1 cut(s) | 1958 |
| ErhI | CCWWGG | 5 cut(s) | 1435, 2310, 3025, 3798, 4232 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 1302, 1334, 2269, 2301, 4049, 4081 |
| FaqI | GGGAC | 5 cut(s) | 1496, 1660, 2624, 3191, 4126 |
| FauI | CCCGC | 1 cut(s) | 2528 |
| FauNDI | CATATG | 1 cut(s) | 2440 |
| FbaI | TGATCA | 2 cut(s) | 1087, 3310 |
| FblI | GTMKAC | 2 cut(s) | 1446, 3865 |
| FokI | GGATG | 9 cut(s) | 311, 539, 590, 1166, 2980, 3213, 3894, 3937, 4251 |
| FriOI | GRGCYC | 1 cut(s) | 2414 |
| FspBI | CTAG | 7 cut(s) | 33, 77, 417, 492, 2981, 3248, 4209 |
| GlaI | GCGC | 3 cut(s) | 1221, 1958, 4383 |
| GsaI | CCCAGC | 1 cut(s) | 2499 |
| GsuI | CTGGAG | 5 cut(s) | 1755, 2256, 3218, 3287, 3546 |
| HaeII | RGCGCY | 2 cut(s) | 1960, 4385 |
| HapII | CCGG | 3 cut(s) | 2679, 3161, 3461 |
| HhaI | GCGC | 3 cut(s) | 1222, 1959, 4384 |
| Hin1I | GRCGYC | 1 cut(s) | 1957 |
| Hin6I | GCGC | 3 cut(s) | 1220, 1957, 4382 |
| HinP1I | GCGC | 3 cut(s) | 1220, 1957, 4382 |
| HincII | GTYRAC | 8 cut(s) | 586, 775, 1447, 1519, 1730, 2827, 3866, 4216 |
| HindII | GTYRAC | 8 cut(s) | 586, 775, 1447, 1519, 1730, 2827, 3866, 4216 |
| HpaII | CCGG | 3 cut(s) | 2679, 3161, 3461 |
| HphI | GGTGA | 7 cut(s) | 116, 353, 402, 1616, 3137, 3800, 3995 |
| Hpy99I | CGWCG | 1 cut(s) | 960 |
| HpyCH4IV | ACGT | 3 cut(s) | 541, 1294, 1489 |
| HpySE526I | ACGT | 3 cut(s) | 541, 1294, 1489 |
| Hsp92I | GRCGYC | 1 cut(s) | 1957 |
| HspAI | GCGC | 3 cut(s) | 1220, 1957, 4382 |
| KasI | GGCGCC | 1 cut(s) | 1956 |
| KflI | GGGWCCC | 1 cut(s) | 3205 |
| Ksp22I | TGATCA | 2 cut(s) | 1087, 3310 |
| LweI | GCATC | 6 cut(s) | 667, 1194, 1687, 2878, 3042, 3252 |
| MabI | ACCWGGT | 1 cut(s) | 3979 |
| MaeI | CTAG | 7 cut(s) | 33, 77, 417, 492, 2981, 3248, 4209 |
| MaeII | ACGT | 3 cut(s) | 541, 1294, 1489 |
| MbiI | CCGCTC | 1 cut(s) | 1952 |
| MfeI | CAATTG | 2 cut(s) | 2190, 4221 |
| MflI | RGATCY | 6 cut(s) | 431, 2066, 2434, 3694, 3775, 4320 |
| MhlI | GDGCHC | 5 cut(s) | 2414, 2449, 3063, 3448, 3882 |
| MlsI | TGGCCA | 3 cut(s) | 294, 531, 3292 |
| MluNI | TGGCCA | 3 cut(s) | 294, 531, 3292 |
| Mly113I | GGCGCC | 1 cut(s) | 1957 |
| MlyI | GAGTC | 8 cut(s) | 130, 151, 1316, 1442, 1452, 1514, 2891, 3278 |
| MmeI | TCCRAC | 2 cut(s) | 3157, 3238 |
| Mox20I | TGGCCA | 3 cut(s) | 294, 531, 3292 |
| Mph1103I | ATGCAT | 1 cut(s) | 1682 |
| MroXI | GAANNNNTTC | 2 cut(s) | 2604, 3126 |
| MscI | TGGCCA | 3 cut(s) | 294, 531, 3292 |
| MslI | CAYNNNNRTG | 3 cut(s) | 502, 2463, 2535 |
| Msp20I | TGGCCA | 3 cut(s) | 294, 531, 3292 |
| MspA1I | CMGCKG | 2 cut(s) | 2656, 3503 |
| MspI | CCGG | 3 cut(s) | 2679, 3161, 3461 |
| MspR9I | CCNGG | 9 cut(s) | 129, 296, 509, 1801, 2071, 2610, 3161, 3462, 3981 |
| MunI | CAATTG | 2 cut(s) | 2190, 4221 |
| Mva1269I | GAATGC | 1 cut(s) | 1680 |
| MvaI | CCWGG | 7 cut(s) | 129, 296, 509, 1801, 2071, 2610, 3981 |
| MvnI | CGCG | 1 cut(s) | 2523 |
| NarI | GGCGCC | 1 cut(s) | 1957 |
| NciI | CCSGG | 2 cut(s) | 3161, 3462 |
| NcoI | CCATGG | 1 cut(s) | 3025 |
| NdeI | CATATG | 1 cut(s) | 2440 |
| NheI | GCTAGC | 1 cut(s) | 2980 |
| NmeAIII | GCCGAG | 1 cut(s) | 1933 |
| NsiI | ATGCAT | 1 cut(s) | 1682 |
| OliI | CACNNNNGTG | 2 cut(s) | 502, 2463 |
| PaeI | GCATGC | 3 cut(s) | 254, 1468, 2632 |
| PaqCI | CACCTGC | 3 cut(s) | 421, 2839, 4008 |
| PciI | ACATGT | 2 cut(s) | 914, 3792 |
| PctI | GAATGC | 1 cut(s) | 1680 |
| PdmI | GAANNNNTTC | 2 cut(s) | 2604, 3126 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 109, 4163 |
| PfoI | TCCNGGA | 2 cut(s) | 1799, 2608 |
| PleI | GAGTC | 8 cut(s) | 129, 150, 1316, 1442, 1451, 1514, 2891, 3277 |
| PluTI | GGCGCC | 1 cut(s) | 1960 |
| PpsI | GAGTC | 8 cut(s) | 129, 150, 1316, 1442, 1451, 1514, 2891, 3277 |
| PpuMI | RGGWCCY | 3 cut(s) | 1385, 1943, 3205 |
| PscI | ACATGT | 2 cut(s) | 914, 3792 |
| PsiI | TTATAA | 1 cut(s) | 2921 |
| Psp124BI | GAGCTC | 1 cut(s) | 2414 |
| Psp5II | RGGWCCY | 3 cut(s) | 1385, 1943, 3205 |
| Psp6I | CCWGG | 7 cut(s) | 127, 294, 507, 1799, 2069, 2608, 3979 |
| PspFI | CCCAGC | 1 cut(s) | 2495 |
| PspGI | CCWGG | 7 cut(s) | 127, 294, 507, 1799, 2069, 2608, 3979 |
| PspPI | GGNCC | 5 cut(s) | 131, 1385, 1943, 3205, 3464 |
| PspPPI | RGGWCCY | 3 cut(s) | 1385, 1943, 3205 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 3472, 3504 |
| PstI | CTGCAG | 3 cut(s) | 193, 1903, 3502 |
| PstNI | CAGNNNCTG | 4 cut(s) | 109, 2372, 2854, 3827 |
| PsuI | RGATCY | 6 cut(s) | 431, 2066, 2434, 3694, 3775, 4320 |
| PvuII | CAGCTG | 2 cut(s) | 2656, 3503 |
| RseI | CAYNNNNRTG | 3 cut(s) | 502, 2463, 2535 |
| SacI | GAGCTC | 1 cut(s) | 2414 |
| SalI | GTCGAC | 2 cut(s) | 1445, 3864 |
| Sau96I | GGNCC | 5 cut(s) | 131, 1385, 1943, 3205, 3464 |
| ScaI | AGTACT | 2 cut(s) | 2401, 4328 |
| SchI | GAGTC | 8 cut(s) | 130, 151, 1316, 1442, 1452, 1514, 2891, 3278 |
| ScrFI | CCNGG | 9 cut(s) | 129, 296, 509, 1801, 2071, 2610, 3161, 3462, 3981 |
| SduI | GDGCHC | 5 cut(s) | 2414, 2449, 3063, 3448, 3882 |
| SexAI | ACCWGGT | 1 cut(s) | 3979 |
| SfaNI | GCATC | 6 cut(s) | 667, 1194, 1687, 2878, 3042, 3252 |
| SfcI | CTRYAG | 6 cut(s) | 189, 807, 1899, 2694, 3498, 3504 |
| SfoI | GGCGCC | 1 cut(s) | 1958 |
| SinI | GGWCC | 3 cut(s) | 1385, 1943, 3205 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 502, 2463, 2535 |
| SmlI | CTYRAG | 6 cut(s) | 876, 1863, 1890, 2415, 2461, 3851 |
| SmoI | CTYRAG | 6 cut(s) | 876, 1863, 1890, 2415, 2461, 3851 |
| SphI | GCATGC | 3 cut(s) | 254, 1468, 2632 |
| SsiI | CCGC | 4 cut(s) | 1124, 1604, 1950, 2521 |
| SspDI | GGCGCC | 1 cut(s) | 1956 |
| SspI | AATATT | 6 cut(s) | 446, 457, 720, 2507, 2776, 4296 |
| SspMI | CTAG | 7 cut(s) | 33, 77, 417, 492, 2981, 3248, 4209 |
| SstI | GAGCTC | 1 cut(s) | 2414 |
| StyD4I | CCNGG | 9 cut(s) | 127, 294, 507, 1799, 2069, 2608, 3159, 3460, 3979 |
| StyI | CCWWGG | 5 cut(s) | 1435, 2310, 3025, 3798, 4232 |
| TaiI | ACGT | 3 cut(s) | 544, 1297, 1492 |
| TaqII | GACCGA | 1 cut(s) | 1873 |
| TatI | WGTACW | 6 cut(s) | 1049, 2038, 2399, 4269, 4326, 4373 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 109, 4163 |
| VpaK11BI | GGWCC | 3 cut(s) | 1385, 1943, 3205 |
| XapI | RAATTY | 9 cut(s) | 724, 856, 1205, 1850, 2230, 2569, 2991, 3635, 3994 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 904 |
| XmiI | GTMKAC | 2 cut(s) | 1446, 3865 |
| XmnI | GAANNNNTTC | 2 cut(s) | 2604, 3126 |
| XspI | CTAG | 7 cut(s) | 33, 77, 417, 492, 2981, 3248, 4209 |
| ZrmI | AGTACT | 2 cut(s) | 2401, 4328 |
| Zsp2I | ATGCAT | 1 cut(s) | 1682 |