Transcriptional activator
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G04560 AT5G04560 AT5G04560 |
| fragaria_vesca | FvH4_2g10170 FvH4_2g10170 FvH4_2g10170 FvH4_2g10170 FvH4_2g10170 |
| malus_domestica | MD02G1245300.v1.1 MD07G1071800.v1.1 MD09G1259000.v1.1 MD09G1259100.v1.1 MD17G1253500.v1.1 MD17G1253600.v1.1 |
| prunus_persica | Prupe.2G089400_v2.0.a1 Prupe.7G005000_v2.0.a1 Prupe.7G005000_v2.0.a1 Prupe.7G005000_v2.0.a1 Prupe.7G005000_v2.0.a1 Prupe.7G005000_v2.0.a1 Prupe.7G005000_v2.0.a1 |
| pyrus_communis | pycom02g21110 pycom09g17380 pycom17g25620 pycom17g25630 |
| rosa_chinensis | RchiOBHm_Chr6g0267351 RchiOBHm_Chr6g0267361 |
| rosa_laevigata | RLG00000014013 |
| rosa_multiflora | Rmu_sc0000746.1_g000002 Rmu_sc0019664.1_g000001 |
| rosa_roxburghii | Rroxscaffold_7G00200830 |
| rosa_rugosa | Rorug06G0031600 Rorug06G0031700 Rorug06G0031800 Rorug06G0031900 Rorug06G0032000 |
| rosa_samantha | Rh6AG153500 Rh6BG153200 Rh6CG149300 Rh6DG137600 |
| rosa_wichuraiana | Rw6G013200 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 4 cut(s) | 40, 751, 1492, 3968 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 2750, 3011 |
| AccI | GTMKAC | 1 cut(s) | 4255 |
| AccII | CGCG | 2 cut(s) | 581, 1975 |
| AciI | CCGC | 4 cut(s) | 1166, 2123, 2257, 3314 |
| AcoI | YGGCCR | 1 cut(s) | 3803 |
| AcuI | CTGAAG | 2 cut(s) | 908, 1560 |
| AcyI | GRCGYC | 1 cut(s) | 275 |
| AdeI | CACNNNGTG | 2 cut(s) | 4058, 4276 |
| AfaI | GTAC | 8 cut(s) | 146, 658, 1328, 2432, 2703, 2741, 3283, 3770 |
| AflIII | ACRYGT | 6 cut(s) | 793, 1445, 1847, 2736, 3075, 4182 |
| AgeI | ACCGGT | 1 cut(s) | 3526 |
| AjiI | CACGTC | 2 cut(s) | 794, 3078 |
| AjnI | CCWGG | 5 cut(s) | 585, 652, 948, 3091, 3507 |
| AjuI | GAANNNNNNNTTGG | 8 cut(s) | 617, 649, 879, 911, 1026, 1058, 2485, 2517 |
| Alw21I | GWGCWC | 4 cut(s) | 427, 990, 3165, 4272 |
| Alw26I | GTCTC | 8 cut(s) | 308, 389, 784, 1995, 2077, 2382, 2516, 3269 |
| Alw44I | GTGCAC | 1 cut(s) | 423 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 812, 2750 |
| AoxI | GGCC | 6 cut(s) | 239, 883, 2807, 3002, 3369, 3803 |
| ApaLI | GTGCAC | 1 cut(s) | 423 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 523, 555 |
| AseI | ATTAAT | 1 cut(s) | 1140 |
| AsiGI | ACCGGT | 1 cut(s) | 3526 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 921, 3786 |
| AspLEI | GCGC | 3 cut(s) | 1975, 1977, 3367 |
| AspS9I | GGNCC | 3 cut(s) | 465, 2944, 3718 |
| AsuC2I | CCSGG | 2 cut(s) | 3674, 3907 |
| AsuHPI | GGTGA | 9 cut(s) | 101, 188, 601, 1331, 2056, 2132, 2540, 3650, 4190 |
| AsuNHI | GCTAGC | 1 cut(s) | 3493 |
| AvaII | GGWCC | 3 cut(s) | 465, 2944, 3718 |
| BaeGI | GKGCMC | 2 cut(s) | 427, 2601 |
| BalI | TGGCCA | 1 cut(s) | 3805 |
| BamHI | GGATCC | 4 cut(s) | 955, 2585, 3504, 4084 |
| BanII | GRGCYC | 1 cut(s) | 3165 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 3274, 3306 |
| BbsI | GAAGAC | 1 cut(s) | 4166 |
| Bbv12I | GWGCWC | 4 cut(s) | 427, 990, 3165, 4272 |
| BciT130I | CCWGG | 5 cut(s) | 587, 654, 950, 3093, 3509 |
| BciVI | GTATCC | 1 cut(s) | 1653 |
| BclI | TGATCA | 1 cut(s) | 3823 |
| BcnI | CCSGG | 2 cut(s) | 3674, 3907 |
| BcoDI | GTCTC | 8 cut(s) | 308, 389, 784, 1995, 2077, 2382, 2516, 3269 |
| BfaI | CTAG | 3 cut(s) | 1733, 3494, 3761 |
| BfmI | CTRYAG | 7 cut(s) | 101, 126, 732, 1367, 1720, 2415, 3031 |
| BfuAI | ACCTGC | 4 cut(s) | 40, 751, 1492, 3968 |
| BfuI | GTATCC | 1 cut(s) | 1653 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 721 |
| BglII | AGATCT | 1 cut(s) | 1371 |
| BlpI | GCTNAGC | 2 cut(s) | 984, 3164 |
| Bme1390I | CCNGG | 7 cut(s) | 587, 654, 950, 3093, 3509, 3674, 3907 |
| Bme18I | GGWCC | 3 cut(s) | 465, 2944, 3718 |
| BmgBI | CACGTC | 2 cut(s) | 794, 3078 |
| BmgT120I | GGNCC | 3 cut(s) | 465, 2944, 3718 |
| BmrFI | CCNGG | 7 cut(s) | 587, 654, 950, 3093, 3509, 3674, 3907 |
| BmrI | ACTGGG | 2 cut(s) | 3352, 3719 |
| BmsI | GCATC | 8 cut(s) | 501, 821, 1241, 2203, 2462, 3175, 3555, 4031 |
| BmtI | GCTAGC | 1 cut(s) | 3497 |
| BmuI | ACTGGG | 2 cut(s) | 3352, 3719 |
| BpiI | GAAGAC | 1 cut(s) | 4166 |
| BpmI | CTGGAG | 5 cut(s) | 894, 2772, 3114, 3731, 3953 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1133 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 984, 3164 |
| BpuEI | CTTGAG | 5 cut(s) | 2364, 2391, 2878, 2910, 3373 |
| BpuMI | CCSGG | 2 cut(s) | 3674, 3907 |
| Bsa29I | ATCGAT | 1 cut(s) | 3549 |
| BsaAI | YACGTR | 1 cut(s) | 1850 |
| BsaBI | GATNNNNATC | 3 cut(s) | 1231, 2168, 3485 |
| BsaHI | GRCGYC | 1 cut(s) | 275 |
| BsaI | GGTCTC | 1 cut(s) | 308 |
| BsaJI | CCNNGG | 6 cut(s) | 468, 949, 1396, 1948, 2765, 4188 |
| BsaWI | WCCGGW | 1 cut(s) | 3526 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 1319, 1349, 1761, 1791, 3233, 3263 |
| Bse118I | RCCGGY | 1 cut(s) | 3526 |
| Bse3DI | GCAATG | 1 cut(s) | 1968 |
| Bse8I | GATNNNNATC | 3 cut(s) | 1231, 2168, 3485 |
| BseBI | CCWGG | 5 cut(s) | 587, 654, 950, 3093, 3509 |
| BseCI | ATCGAT | 1 cut(s) | 3549 |
| BseDI | CCNNGG | 6 cut(s) | 468, 949, 1396, 1948, 2765, 4188 |
| BseGI | GGATG | 7 cut(s) | 478, 1057, 1376, 2477, 3486, 3719, 4022 |
| BseJI | GATNNNNATC | 3 cut(s) | 1231, 2168, 3485 |
| BseMI | GCAATG | 1 cut(s) | 1968 |
| BsePI | GCGCGC | 1 cut(s) | 1973 |
| BseRI | GAGGAG | 4 cut(s) | 521, 802, 1187, 2804 |
| BseSI | GKGCMC | 2 cut(s) | 427, 2601 |
| BsgI | GTGCAG | 2 cut(s) | 1734, 2717 |
| Bsh1236I | CGCG | 2 cut(s) | 581, 1975 |
| Bsh1285I | CGRYCG | 1 cut(s) | 3527 |
| BshFI | GGCC | 6 cut(s) | 241, 885, 2809, 3004, 3371, 3805 |
| BshTI | ACCGGT | 1 cut(s) | 3526 |
| BshVI | ATCGAT | 1 cut(s) | 3549 |
| BsiEI | CGRYCG | 1 cut(s) | 3527 |
| BsiHKAI | GWGCWC | 4 cut(s) | 427, 990, 3165, 4272 |
| BsiSI | CCGG | 4 cut(s) | 3527, 3643, 3674, 3906 |
| BslFI | GGGAC | 5 cut(s) | 574, 1769, 2315, 3359, 3704 |
| BsmAI | GTCTC | 8 cut(s) | 308, 389, 784, 1995, 2077, 2382, 2516, 3269 |
| BsmBI | CGTCTC | 3 cut(s) | 784, 2382, 2516 |
| BsmFI | GGGAC | 5 cut(s) | 574, 1769, 2315, 3359, 3704 |
| BsmI | GAATGC | 3 cut(s) | 598, 808, 3337 |
| BsnI | GGCC | 6 cut(s) | 241, 885, 2809, 3004, 3371, 3805 |
| Bso31I | GGTCTC | 1 cut(s) | 308 |
| Bsp1286I | GDGCHC | 5 cut(s) | 427, 990, 2601, 3165, 4272 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 984, 3164 |
| Bsp19I | CCATGG | 2 cut(s) | 468, 2765 |
| BspACI | CCGC | 4 cut(s) | 1166, 2123, 2257, 3314 |
| BspANI | GGCC | 6 cut(s) | 241, 885, 2809, 3004, 3371, 3805 |
| BspDI | ATCGAT | 1 cut(s) | 3549 |
| BspFNI | CGCG | 2 cut(s) | 581, 1975 |
| BspHI | TCATGA | 2 cut(s) | 783, 1510 |
| BspMAI | CTGCAG | 5 cut(s) | 105, 130, 736, 1371, 1724 |
| BspMI | ACCTGC | 4 cut(s) | 40, 751, 1492, 3968 |
| BspOI | GCTAGC | 1 cut(s) | 3497 |
| BspTNI | GGTCTC | 1 cut(s) | 308 |
| BsrDI | GCAATG | 1 cut(s) | 1968 |
| BsrFI | RCCGGY | 1 cut(s) | 3526 |
| BssAI | RCCGGY | 1 cut(s) | 3526 |
| BssECI | CCNNGG | 6 cut(s) | 468, 949, 1396, 1948, 2765, 4188 |
| BssHII | GCGCGC | 1 cut(s) | 1973 |
| BssNI | GRCGYC | 1 cut(s) | 275 |
| BssT1I | CCWWGG | 5 cut(s) | 468, 1396, 1948, 2765, 4188 |
| Bst2UI | CCWGG | 5 cut(s) | 587, 654, 950, 3093, 3509 |
| Bst4CI | ACNGT | 8 cut(s) | 144, 1026, 2118, 2552, 2874, 3035, 3249, 4125 |
| Bst6I | CTCTTC | 2 cut(s) | 433, 1923 |
| BstACI | GRCGYC | 1 cut(s) | 275 |
| BstBAI | YACGTR | 1 cut(s) | 1850 |
| BstDSI | CCRYGG | 2 cut(s) | 468, 2765 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1764 |
| BstF5I | GGATG | 7 cut(s) | 478, 1057, 1376, 2477, 3486, 3719, 4022 |
| BstFNI | CGCG | 2 cut(s) | 581, 1975 |
| BstHHI | GCGC | 3 cut(s) | 1975, 1977, 3367 |
| BstMAI | GTCTC | 8 cut(s) | 308, 389, 784, 1995, 2077, 2382, 2516, 3269 |
| BstMCI | CGRYCG | 1 cut(s) | 3527 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 602, 721, 743, 3612 |
| BstNI | CCWGG | 5 cut(s) | 587, 654, 950, 3093, 3509 |
| BstNSI | RCATGY | 8 cut(s) | 763, 782, 1449, 1981, 2740, 2935, 3146, 4186 |
| BstSCI | CCNGG | 7 cut(s) | 585, 652, 948, 3091, 3507, 3672, 3905 |
| BstSFI | CTRYAG | 7 cut(s) | 101, 126, 732, 1367, 1720, 2415, 3031 |
| BstSLI | GKGCMC | 2 cut(s) | 427, 2601 |
| BstUI | CGCG | 2 cut(s) | 581, 1975 |
| BstV2I | GAAGAC | 1 cut(s) | 4166 |
| BstX2I | RGATCY | 6 cut(s) | 955, 1371, 2458, 2585, 3504, 4084 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2766 |
| BstYI | RGATCY | 6 cut(s) | 955, 1371, 2458, 2585, 3504, 4084 |
| Bsu15I | ATCGAT | 1 cut(s) | 3549 |
| BsuI | GTATCC | 1 cut(s) | 1653 |
| BsuRI | GGCC | 6 cut(s) | 241, 885, 2809, 3004, 3371, 3805 |
| BsuTUI | ATCGAT | 1 cut(s) | 3549 |
| BtgI | CCRYGG | 2 cut(s) | 468, 2765 |
| BtgZI | GCGATG | 1 cut(s) | 1908 |
| BtrI | CACGTC | 2 cut(s) | 794, 3078 |
| BtsCI | GGATG | 7 cut(s) | 478, 1057, 1376, 2477, 3486, 3719, 4022 |
| BtsI | GCAGTG | 1 cut(s) | 3941 |
| BtsIMutI | CAGTG | 8 cut(s) | 1022, 1075, 2466, 2649, 3009, 3163, 3413, 3941 |
| BveI | ACCTGC | 4 cut(s) | 40, 751, 1492, 3968 |
| CaiI | CAGNNNCTG | 2 cut(s) | 812, 2750 |
| CciI | TCATGA | 2 cut(s) | 783, 1510 |
| CfoI | GCGC | 3 cut(s) | 1975, 1977, 3367 |
| Cfr10I | RCCGGY | 1 cut(s) | 3526 |
| Cfr13I | GGNCC | 3 cut(s) | 465, 2944, 3718 |
| ClaI | ATCGAT | 1 cut(s) | 3549 |
| CseI | GACGC | 3 cut(s) | 283, 413, 587 |
| CsiI | ACCWGGT | 2 cut(s) | 585, 652 |
| Csp6I | GTAC | 8 cut(s) | 145, 657, 1327, 2431, 2702, 2740, 3282, 3769 |
| CspAI | ACCGGT | 1 cut(s) | 3526 |
| CviQI | GTAC | 8 cut(s) | 145, 657, 1327, 2431, 2702, 2740, 3282, 3769 |
| DraIII | CACNNNGTG | 2 cut(s) | 4058, 4276 |
| EaeI | YGGCCR | 1 cut(s) | 3803 |
| Eam1104I | CTCTTC | 2 cut(s) | 433, 1923 |
| EarI | CTCTTC | 2 cut(s) | 433, 1923 |
| EciI | GGCGGA | 1 cut(s) | 3329 |
| Ecl136II | GAGCTC | 1 cut(s) | 3163 |
| Eco130I | CCWWGG | 5 cut(s) | 468, 1396, 1948, 2765, 4188 |
| Eco24I | GRGCYC | 1 cut(s) | 3165 |
| Eco31I | GGTCTC | 1 cut(s) | 308 |
| Eco47I | GGWCC | 3 cut(s) | 465, 2944, 3718 |
| Eco53kI | GAGCTC | 1 cut(s) | 3163 |
| Eco57I | CTGAAG | 2 cut(s) | 908, 1560 |
| EcoICRI | GAGCTC | 1 cut(s) | 3163 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1764 |
| EcoO109I | RGGNCCY | 1 cut(s) | 3718 |
| EcoRI | GAATTC | 2 cut(s) | 3512, 3883 |
| EcoRII | CCWGG | 5 cut(s) | 585, 652, 948, 3091, 3507 |
| EcoT14I | CCWWGG | 5 cut(s) | 468, 1396, 1948, 2765, 4188 |
| EcoT22I | ATGCAT | 2 cut(s) | 765, 2956 |
| EcoT38I | GRGCYC | 1 cut(s) | 3165 |
| ErhI | CCWWGG | 5 cut(s) | 468, 1396, 1948, 2765, 4188 |
| Esp3I | CGTCTC | 3 cut(s) | 784, 2382, 2516 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1026, 1058 |
| FaqI | GGGAC | 5 cut(s) | 574, 1769, 2315, 3359, 3704 |
| FauI | CCCGC | 1 cut(s) | 2130 |
| FauNDI | CATATG | 2 cut(s) | 765, 852 |
| FbaI | TGATCA | 1 cut(s) | 3823 |
| FblI | GTMKAC | 1 cut(s) | 4255 |
| FokI | GGATG | 7 cut(s) | 485, 1064, 1363, 2484, 3493, 3726, 4009 |
| FriOI | GRGCYC | 1 cut(s) | 3165 |
| FspBI | CTAG | 3 cut(s) | 1733, 3494, 3761 |
| GlaI | GCGC | 3 cut(s) | 1974, 1976, 3366 |
| GsuI | CTGGAG | 5 cut(s) | 894, 2772, 3114, 3731, 3953 |
| HaeIII | GGCC | 6 cut(s) | 241, 885, 2809, 3004, 3371, 3805 |
| HapII | CCGG | 4 cut(s) | 3527, 3643, 3674, 3906 |
| HgaI | GACGC | 3 cut(s) | 283, 413, 587 |
| HhaI | GCGC | 3 cut(s) | 1975, 1977, 3367 |
| Hin1I | GRCGYC | 1 cut(s) | 275 |
| Hin6I | GCGC | 3 cut(s) | 1973, 1975, 3365 |
| HinP1I | GCGC | 3 cut(s) | 1973, 1975, 3365 |
| HincII | GTYRAC | 9 cut(s) | 374, 1314, 1960, 2038, 2179, 2246, 3340, 3679, 4256 |
| HindII | GTYRAC | 9 cut(s) | 374, 1314, 1960, 2038, 2179, 2246, 3340, 3679, 4256 |
| HpaI | GTTAAC | 2 cut(s) | 1314, 2179 |
| HpaII | CCGG | 4 cut(s) | 3527, 3643, 3674, 3906 |
| HphI | GGTGA | 9 cut(s) | 101, 188, 601, 1331, 2056, 2132, 2540, 3650, 4190 |
| Hpy99I | CGWCG | 1 cut(s) | 2530 |
| HpyCH4III | ACNGT | 8 cut(s) | 144, 1026, 2118, 2552, 2874, 3035, 3249, 4125 |
| HpyCH4IV | ACGT | 9 cut(s) | 533, 793, 1520, 1810, 1849, 2008, 2438, 2507, 3077 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 602, 721, 743, 3612 |
| HpySE526I | ACGT | 9 cut(s) | 533, 793, 1520, 1810, 1849, 2008, 2438, 2507, 3077 |
| Hsp92I | GRCGYC | 1 cut(s) | 275 |
| HspAI | GCGC | 3 cut(s) | 1973, 1975, 3365 |
| KflI | GGGWCCC | 1 cut(s) | 3718 |
| Ksp22I | TGATCA | 1 cut(s) | 3823 |
| KspAI | GTTAAC | 2 cut(s) | 1314, 2179 |
| LmnI | GCTCC | 4 cut(s) | 2152, 2411, 3241, 4165 |
| LweI | GCATC | 8 cut(s) | 501, 821, 1241, 2203, 2462, 3175, 3555, 4031 |
| MabI | ACCWGGT | 2 cut(s) | 585, 652 |
| MaeI | CTAG | 3 cut(s) | 1733, 3494, 3761 |
| MaeII | ACGT | 9 cut(s) | 533, 793, 1520, 1810, 1849, 2008, 2438, 2507, 3077 |
| MfeI | CAATTG | 4 cut(s) | 492, 1046, 1635, 3897 |
| MflI | RGATCY | 6 cut(s) | 955, 1371, 2458, 2585, 3504, 4084 |
| MhlI | GDGCHC | 5 cut(s) | 427, 990, 2601, 3165, 4272 |
| MlsI | TGGCCA | 1 cut(s) | 3805 |
| MluNI | TGGCCA | 1 cut(s) | 3805 |
| MlyI | GAGTC | 5 cut(s) | 170, 694, 1955, 2033, 3404 |
| MmeI | TCCRAC | 5 cut(s) | 2466, 2742, 3051, 3670, 3751 |
| Mox20I | TGGCCA | 1 cut(s) | 3805 |
| Mph1103I | ATGCAT | 2 cut(s) | 765, 2956 |
| MroXI | GAANNNNTTC | 2 cut(s) | 921, 3786 |
| MscI | TGGCCA | 1 cut(s) | 3805 |
| MslI | CAYNNNNRTG | 4 cut(s) | 430, 764, 851, 3935 |
| Msp20I | TGGCCA | 1 cut(s) | 3805 |
| MspA1I | CMGCKG | 2 cut(s) | 605, 1166 |
| MspI | CCGG | 4 cut(s) | 3527, 3643, 3674, 3906 |
| MspR9I | CCNGG | 7 cut(s) | 587, 654, 950, 3093, 3509, 3674, 3907 |
| MunI | CAATTG | 4 cut(s) | 492, 1046, 1635, 3897 |
| Mva1269I | GAATGC | 3 cut(s) | 598, 808, 3337 |
| MvaI | CCWGG | 5 cut(s) | 587, 654, 950, 3093, 3509 |
| MvnI | CGCG | 2 cut(s) | 581, 1975 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 602, 721, 743, 3612 |
| NciI | CCSGG | 2 cut(s) | 3674, 3907 |
| NcoI | CCATGG | 2 cut(s) | 468, 2765 |
| NdeI | CATATG | 2 cut(s) | 765, 852 |
| NheI | GCTAGC | 1 cut(s) | 3493 |
| NmuCI | GTSAC | 9 cut(s) | 89, 176, 1319, 2401, 3264, 3928, 3939, 4058, 4178 |
| NsiI | ATGCAT | 2 cut(s) | 765, 2956 |
| NspI | RCATGY | 8 cut(s) | 763, 782, 1449, 1981, 2740, 2935, 3146, 4186 |
| PaeI | GCATGC | 1 cut(s) | 1981 |
| PagI | TCATGA | 2 cut(s) | 783, 1510 |
| PauI | GCGCGC | 1 cut(s) | 1973 |
| PciI | ACATGT | 3 cut(s) | 1445, 2736, 4182 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 1816, 2435 |
| PctI | GAATGC | 3 cut(s) | 598, 808, 3337 |
| PdmI | GAANNNNTTC | 2 cut(s) | 921, 3786 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 2750, 3011 |
| PfoI | TCCNGGA | 1 cut(s) | 3507 |
| PinAI | ACCGGT | 1 cut(s) | 3526 |
| PleI | GAGTC | 5 cut(s) | 169, 693, 1955, 2033, 3404 |
| PpsI | GAGTC | 5 cut(s) | 169, 693, 1955, 2033, 3404 |
| Ppu21I | YACGTR | 1 cut(s) | 1850 |
| PpuMI | RGGWCCY | 1 cut(s) | 3718 |
| PscI | ACATGT | 3 cut(s) | 1445, 2736, 4182 |
| PshBI | ATTAAT | 1 cut(s) | 1140 |
| Psp124BI | GAGCTC | 1 cut(s) | 3165 |
| Psp5II | RGGWCCY | 1 cut(s) | 3718 |
| Psp6I | CCWGG | 5 cut(s) | 585, 652, 948, 3091, 3507 |
| PspGI | CCWGG | 5 cut(s) | 585, 652, 948, 3091, 3507 |
| PspPI | GGNCC | 3 cut(s) | 465, 2944, 3718 |
| PspPPI | RGGWCCY | 1 cut(s) | 3718 |
| PsrI | GAACNNNNNNTAC | 4 cut(s) | 2694, 2726, 2942, 2974 |
| PstI | CTGCAG | 5 cut(s) | 105, 130, 736, 1371, 1724 |
| PstNI | CAGNNNCTG | 2 cut(s) | 812, 2750 |
| PsuI | RGATCY | 6 cut(s) | 955, 1371, 2458, 2585, 3504, 4084 |
| PteI | GCGCGC | 1 cut(s) | 1973 |
| PvuII | CAGCTG | 1 cut(s) | 605 |
| RsaI | GTAC | 8 cut(s) | 146, 658, 1328, 2432, 2703, 2741, 3283, 3770 |
| RsaNI | GTAC | 8 cut(s) | 145, 657, 1327, 2431, 2702, 2740, 3282, 3769 |
| RseI | CAYNNNNRTG | 4 cut(s) | 430, 764, 851, 3935 |
| SacI | GAGCTC | 1 cut(s) | 3165 |
| SalI | GTCGAC | 1 cut(s) | 4254 |
| Sau96I | GGNCC | 3 cut(s) | 465, 2944, 3718 |
| SchI | GAGTC | 5 cut(s) | 170, 694, 1955, 2033, 3404 |
| ScrFI | CCNGG | 7 cut(s) | 587, 654, 950, 3093, 3509, 3674, 3907 |
| SduI | GDGCHC | 5 cut(s) | 427, 990, 2601, 3165, 4272 |
| SexAI | ACCWGGT | 2 cut(s) | 585, 652 |
| SfaNI | GCATC | 8 cut(s) | 501, 821, 1241, 2203, 2462, 3175, 3555, 4031 |
| SfcI | CTRYAG | 7 cut(s) | 101, 126, 732, 1367, 1720, 2415, 3031 |
| SinI | GGWCC | 3 cut(s) | 465, 2944, 3718 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 430, 764, 851, 3935 |
| SmlI | CTYRAG | 5 cut(s) | 2379, 2406, 2857, 2925, 3352 |
| SmoI | CTYRAG | 5 cut(s) | 2379, 2406, 2857, 2925, 3352 |
| SphI | GCATGC | 1 cut(s) | 1981 |
| SsiI | CCGC | 4 cut(s) | 1166, 2123, 2257, 3314 |
| SspMI | CTAG | 3 cut(s) | 1733, 3494, 3761 |
| SstI | GAGCTC | 1 cut(s) | 3165 |
| StyD4I | CCNGG | 7 cut(s) | 585, 652, 948, 3091, 3507, 3672, 3905 |
| StyI | CCWWGG | 5 cut(s) | 468, 1396, 1948, 2765, 4188 |
| TaaI | ACNGT | 8 cut(s) | 144, 1026, 2118, 2552, 2874, 3035, 3249, 4125 |
| TaiI | ACGT | 9 cut(s) | 536, 796, 1523, 1813, 1852, 2011, 2441, 2510, 3080 |
| TaqI | TCGA | 8 cut(s) | 898, 1235, 2813, 2829, 3549, 4065, 4133, 4255 |
| TaqII | GACCGA | 2 cut(s) | 624, 2118 |
| TatI | WGTACW | 1 cut(s) | 3281 |
| TscAI | CASTG | 8 cut(s) | 1029, 1075, 2473, 2656, 3016, 3163, 3420, 3948 |
| TseFI | GTSAC | 9 cut(s) | 89, 176, 1319, 2401, 3264, 3928, 3939, 4058, 4178 |
| Tsp45I | GTSAC | 9 cut(s) | 89, 176, 1319, 2401, 3264, 3928, 3939, 4058, 4178 |
| TspGWI | ACGGA | 3 cut(s) | 32, 3517, 4178 |
| TspRI | CASTG | 8 cut(s) | 1029, 1075, 2473, 2656, 3016, 3163, 3420, 3948 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 2750, 3011 |
| VneI | GTGCAC | 1 cut(s) | 423 |
| VpaK11BI | GGWCC | 3 cut(s) | 465, 2944, 3718 |
| VspI | ATTAAT | 1 cut(s) | 1140 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1764 |
| XbaI | TCTAGA | 1 cut(s) | 1732 |
| XceI | RCATGY | 8 cut(s) | 763, 782, 1449, 1981, 2740, 2935, 3146, 4186 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2648 |
| XmiI | GTMKAC | 1 cut(s) | 4255 |
| XmnI | GAANNNNTTC | 2 cut(s) | 921, 3786 |
| XspI | CTAG | 3 cut(s) | 1733, 3494, 3761 |
| Zsp2I | ATGCAT | 2 cut(s) | 765, 2956 |