Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0003741

Physical Location & Seq

Genomic Coordinates Reverse (-)

10855645 .. 10859513

Gene Structure 3869 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g12370.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1200 bp

ATGAGGAAGAAGGCAGTGCCGACCACAATGATTGTAATGGCAGTGATCCTATGCTTATTCAAGTTAATGGGTGTTTCTGCCTCGCATCTCAGGCGAAATCTGCTTGCCAATGGCCTTGGAGTCACTCCTCCAATGGGGTGGAATAGTTGGAATCACTTCAACTGCCGAATTGAGGAGAAAACCATCAAGGAAACTGCTGATGCTCTGGTATCCACTGGTCTTTCTAAACTTGGATATACCTATGTTAACATAGATGACTGCTGGGCCGAAATAGCACGCGATGTCAAGGGTAATCTAGTGGCCAAGAAATCAGCATTTCCATCTGGCATTAAAGCTCTTGTGGATTATGTCCACAGCAAGGGTCTTAAGATAGGAATCTACTCAGATGCAGGGTACTTCACTTGTAGCAAAACCATGCCTGGTTCACTTGGTCATGAAGAACAAGATGCCAATACCTTTGCTGCTTGGGGCATCGATTATTTAAAGTATGATAACTGTTATAATGATGGCTCAAACCCAACTGTTAGATACCCTGTAATGACCCGAGCTCTGATGAAAGCAGGCCGTCCCATATTCTTTTCTCTGTGCGAGTGGGGAGATATGCACCCTGCTTTATGGGGTGCCAAGTTAGGAAATAGCTGGAGAACTACAAAGGACATTTCTGATTCATGGGAGAGTATGGTCTCCAGAGCAGACATGAATGAAGTTTATGCTGAATATGCCAGGCCTGGTGGTTGGAATGATCCCGACATGCTTGAAGTGGGAAATGGAGGAATGACAAAAGATGAATATGTAGTCCATTTTAGCATATGGGCCATATCAAAGGCTCCCCTTCTTCTTGGTTGTGATGTGAGGAATATGTCAAAAGACACTCTGGAGATCGTTGCAAATAAAGAGGTCATCTCTGTCAACCAAGATCCACTTGGTGTCCAAGCTAAAAAAGTCAGACTGGAAGGAGATCTTGAGATCTGGGCTGGACCACTTTCAGGGTACAGAGTAGCTTTACTCCTTATCAACCAAGGACCTGAGAACAATACCATTACAGCTCAATGGGAAGACATAGGGCTCCCCCCAAATACTGTTGTTGAAGCAAGAGATCTTTGGGAGCACAAGACACTGAAGAAGCTATTTGTTGGAAACTTGACAGCCTCCGTGAACTCTCATGCATGTAAAATGTATGTGTTGAAGCCAATCTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0009505 GO:0030312 GO:0044464 GO:0048046 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00052 ko00561 ko00600 ko00603 map00052 map00561 map00600 map00603

Pfam Domains

Protein Families

Melibiase_2 Melibiase_2_C

Protein Analysis

400

Amino Acids

44.25

Weight (kDa)

7.07

Isoelectric Point (pI)

27.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Melibiase_2	PF16499	42 - 306	2.3e-75	Alpha galactosidase A
Melibiase_C	PF17801	318 - 395	6.3e-19	Alpha galactosidase C-terminal beta sandwich domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003741)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08380 AT5G08380
fragaria_vesca	FvH4_2g12370 FvH4_2g12370 FvH4_2g12370 FvH4_4g37361
malus_domestica	MD13G1000400.v1.1 MD16G1012600.v1.1
prunus_persica	Prupe.1G352200_v2.0.a1 Prupe.1G352200_v2.0.a1
pyrus_communis	pycom13g00040 pycom16g01180 pycom2749g00030
rosa_chinensis	RchiOBHm_Chr4g0447241 RchiOBHm_Chr6g0272391
rosa_laevigata	RLG00000005594 RLG00000013676
rosa_multiflora	Rmu_co8492007.1_g000001 Rmu_sc0018949.1_g000001 Rmu_sc0018950.1_g000001
rosa_roxburghii	Rroxscaffold_5G00387600 Rroxscaffold_7G00196300
rosa_rugosa	Rorug04G0379000 Rorug06G0069000
rosa_samantha	Rh4AG440500 Rh4BG449500 Rh4CG466600 Rh4DG448000 Rh6AG184900 Rh6BG188200 Rh6CG186100 Rh6DG177900
rosa_wichuraiana	Rw4G037690 Rw6G015990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	501
AccB1I	GGYRCC	1 cut(s)	620
AccII	CGCG	1 cut(s)	279
AclWI	GGATC	3 cut(s)	40, 737, 911
AcoI	YGGCCR	1 cut(s)	300
AcuI	CTGAAG	1 cut(s)	1139
AdeI	CACNNNGTG	1 cut(s)	926
AfaI	GTAC	2 cut(s)	395, 992
AfiI	CCNNNNNNNGG	4 cut(s)	134, 172, 358, 986
AflII	CTTAAG	1 cut(s)	365
AgsI	TTSAA	5 cut(s)	61, 160, 758, 1088, 1186
AjnI	CCWGG	3 cut(s)	418, 722, 727
AluBI	AGCT	7 cut(s)	335, 548, 639, 935, 1001, 1046, 1126
AluI	AGCT	7 cut(s)	335, 548, 639, 935, 1001, 1046, 1126
Alw21I	GWGCWC	2 cut(s)	550, 1110
Alw26I	GTCTC	1 cut(s)	688
AlwI	GGATC	3 cut(s)	40, 737, 911
Ama87I	CYCGRG	1 cut(s)	543
AoxI	GGCC	6 cut(s)	112, 264, 300, 562, 725, 813
ApeKI	GCWGC	1 cut(s)	461
Asp700I	GAANNNNTTC	1 cut(s)	155
AspS9I	GGNCC	4 cut(s)	264, 813, 977, 1022
AvaI	CYCGRG	1 cut(s)	543
AvaII	GGWCC	2 cut(s)	977, 1022
BalI	TGGCCA	1 cut(s)	302
BanI	GGYRCC	1 cut(s)	620
BanII	GRGCYC	2 cut(s)	550, 1068
BbsI	GAAGAC	1 cut(s)	1062
Bbv12I	GWGCWC	2 cut(s)	550, 1110
BbvI	GCAGC	1 cut(s)	448
BccI	CCATC	3 cut(s)	191, 328, 500
BceAI	ACGGC	1 cut(s)	549
BciT130I	CCWGG	3 cut(s)	420, 724, 729
BciVI	GTATCC	1 cut(s)	220
BcoDI	GTCTC	1 cut(s)	688
BfaI	CTAG	1 cut(s)	296
BfrI	CTTAAG	1 cut(s)	365
BfuI	GTATCC	1 cut(s)	220
BglII	AGATCT	3 cut(s)	958, 966, 1096
BisI	GCNGC	1 cut(s)	462
BlsI	GCNGC	1 cut(s)	463
Bme1390I	CCNGG	3 cut(s)	420, 724, 729
Bme18I	GGWCC	2 cut(s)	977, 1022
BmeT110I	CYCGRG	1 cut(s)	543
BmgT120I	GGNCC	4 cut(s)	264, 813, 977, 1022
BmiI	GGNNCC	3 cut(s)	622, 828, 1067
BmrFI	CCNGG	3 cut(s)	420, 724, 729
BmsI	GCATC	5 cut(s)	94, 190, 376, 436, 480
BpiI	GAAGAC	1 cut(s)	1062
BplI	GAGNNNNNCTC	2 cut(s)	887, 919
BpmI	CTGGAG	3 cut(s)	661, 670, 896
BpuEI	CTTGAG	1 cut(s)	983
Bsa29I	ATCGAT	1 cut(s)	474
BsaBI	GATNNNNATC	1 cut(s)	374
BsaI	GGTCTC	1 cut(s)	688
BsaJI	CCNNGG	2 cut(s)	115, 1018
Bsc4I	CCNNNNNNNGG	4 cut(s)	134, 172, 358, 986
Bse1I	ACTGG	2 cut(s)	220, 954
Bse8I	GATNNNNATC	1 cut(s)	374
BseBI	CCWGG	3 cut(s)	420, 724, 729
BseCI	ATCGAT	1 cut(s)	474
BseDI	CCNNGG	2 cut(s)	115, 1018
BseJI	GATNNNNATC	1 cut(s)	374
BseLI	CCNNNNNNNGG	4 cut(s)	134, 172, 358, 986
BseMII	CTCAG	3 cut(s)	103, 396, 1017
BseNI	ACTGG	2 cut(s)	220, 954
BseRI	GAGGAG	2 cut(s)	117, 188
BseXI	GCAGC	1 cut(s)	448
BseYI	CCCAGC	1 cut(s)	261
Bsh1236I	CGCG	1 cut(s)	279
BshFI	GGCC	6 cut(s)	114, 266, 302, 564, 727, 815
BshNI	GGYRCC	1 cut(s)	620
BshVI	ATCGAT	1 cut(s)	474
BsiHKAI	GWGCWC	2 cut(s)	550, 1110
BsiHKCI	CYCGRG	1 cut(s)	543
BslFI	GGGAC	1 cut(s)	552
BslI	CCNNNNNNNGG	4 cut(s)	134, 172, 358, 986
BsmAI	GTCTC	1 cut(s)	688
BsmFI	GGGAC	1 cut(s)	552
BsnI	GGCC	6 cut(s)	114, 266, 302, 564, 727, 815
Bso31I	GGTCTC	1 cut(s)	688
BsoBI	CYCGRG	1 cut(s)	543
Bsp1286I	GDGCHC	3 cut(s)	550, 1068, 1110
Bsp143I	GATC	7 cut(s)	45, 742, 879, 916, 958, 966, 1096
BspANI	GGCC	6 cut(s)	114, 266, 302, 564, 727, 815
BspCNI	CTCAG	3 cut(s)	102, 395, 1018
BspDI	ATCGAT	1 cut(s)	474
BspFNI	CGCG	1 cut(s)	279
BspHI	TCATGA	2 cut(s)	433, 1196
BspLI	GGNNCC	3 cut(s)	622, 828, 1067
BspPI	GGATC	3 cut(s)	40, 737, 911
BspT107I	GGYRCC	1 cut(s)	620
BspTI	CTTAAG	1 cut(s)	365
BspTNI	GGTCTC	1 cut(s)	688
BsrI	ACTGG	2 cut(s)	220, 954
BssECI	CCNNGG	2 cut(s)	115, 1018
BssMI	GATC	7 cut(s)	45, 742, 879, 916, 958, 966, 1096
BssT1I	CCWWGG	2 cut(s)	115, 1018
Bst2UI	CCWGG	3 cut(s)	420, 724, 729
Bst4CI	ACNGT	3 cut(s)	497, 523, 1081
BstAFI	CTTAAG	1 cut(s)	365
BstC8I	GCNNGC	3 cut(s)	105, 277, 562
BstDEI	CTNAG	3 cut(s)	89, 382, 1026
BstFNI	CGCG	1 cut(s)	279
BstKTI	GATC	7 cut(s)	48, 745, 882, 919, 961, 969, 1099
BstMAI	GTCTC	1 cut(s)	688
BstMBI	GATC	7 cut(s)	45, 742, 879, 916, 958, 966, 1096
BstMWI	GCNNNNNNNGC	4 cut(s)	91, 100, 272, 719
BstNI	CCWGG	3 cut(s)	420, 724, 729
BstNSI	RCATGY	2 cut(s)	754, 1170
BstSCI	CCNGG	3 cut(s)	418, 722, 727
BstUI	CGCG	1 cut(s)	279
BstV1I	GCAGC	1 cut(s)	448
BstV2I	GAAGAC	1 cut(s)	1062
BstX2I	RGATCY	4 cut(s)	916, 958, 966, 1096
BstXI	CCANNNNNNTGG	1 cut(s)	138
BstYI	RGATCY	4 cut(s)	916, 958, 966, 1096
Bsu15I	ATCGAT	1 cut(s)	474
BsuI	GTATCC	1 cut(s)	220
BsuRI	GGCC	6 cut(s)	114, 266, 302, 564, 727, 815
BsuTUI	ATCGAT	1 cut(s)	474
BtgZI	GCGATG	1 cut(s)	294
BtsI	GCAGTG	2 cut(s)	21, 48
BtsIMutI	CAGTG	4 cut(s)	21, 48, 213, 1115
Cac8I	GCNNGC	3 cut(s)	105, 277, 562
CciI	TCATGA	2 cut(s)	433, 1196
Cfr13I	GGNCC	4 cut(s)	264, 813, 977, 1022
ClaI	ATCGAT	1 cut(s)	474
Csp6I	GTAC	2 cut(s)	394, 991
CspCI	CAANNNNNGTGG	2 cut(s)	13, 48
CviAII	CATG	8 cut(s)	415, 434, 669, 697, 751, 1163, 1167, 1197
CviQI	GTAC	2 cut(s)	394, 991
DdeI	CTNAG	3 cut(s)	89, 382, 1026
DpnI	GATC	7 cut(s)	47, 744, 881, 918, 960, 968, 1098
DpnII	GATC	7 cut(s)	45, 742, 879, 916, 958, 966, 1096
DraI	TTTAAA	1 cut(s)	483
DraIII	CACNNNGTG	1 cut(s)	926
EaeI	YGGCCR	1 cut(s)	300
Ecl136II	GAGCTC	1 cut(s)	548
Eco130I	CCWWGG	2 cut(s)	115, 1018
Eco147I	AGGCCT	1 cut(s)	727
Eco24I	GRGCYC	2 cut(s)	550, 1068
Eco31I	GGTCTC	1 cut(s)	688
Eco47I	GGWCC	2 cut(s)	977, 1022
Eco53kI	GAGCTC	1 cut(s)	548
Eco57I	CTGAAG	1 cut(s)	1139
Eco88I	CYCGRG	1 cut(s)	543
EcoICRI	GAGCTC	1 cut(s)	548
EcoO109I	RGGNCCY	1 cut(s)	1022
EcoRII	CCWGG	3 cut(s)	418, 722, 727
EcoT14I	CCWWGG	2 cut(s)	115, 1018
EcoT22I	ATGCAT	1 cut(s)	1168
EcoT38I	GRGCYC	2 cut(s)	550, 1068
ErhI	CCWWGG	2 cut(s)	115, 1018
FaeI	CATG	8 cut(s)	418, 437, 672, 700, 754, 1166, 1170, 1200
FalI	AAGNNNNNCTT	4 cut(s)	906, 938, 945, 977
FaqI	GGGAC	1 cut(s)	552
FatI	CATG	8 cut(s)	414, 433, 668, 696, 750, 1162, 1166, 1196
FauNDI	CATATG	1 cut(s)	809
Fnu4HI	GCNGC	1 cut(s)	462
FriOI	GRGCYC	2 cut(s)	550, 1068
Fsp4HI	GCNGC	1 cut(s)	462
FspBI	CTAG	1 cut(s)	296
GluI	GCNGC	1 cut(s)	462
GsaI	CCCAGC	1 cut(s)	265
GsuI	CTGGAG	3 cut(s)	661, 670, 896
HaeIII	GGCC	6 cut(s)	114, 266, 302, 564, 727, 815
Hin1II	CATG	8 cut(s)	418, 437, 672, 700, 754, 1166, 1170, 1200
HincII	GTYRAC	2 cut(s)	247, 910
HindII	GTYRAC	2 cut(s)	247, 910
HinfI	GANTC	4 cut(s)	120, 151, 375, 665
HpaI	GTTAAC	1 cut(s)	247
Hpy166II	GTNNAC	5 cut(s)	247, 352, 425, 910, 1156
Hpy188I	TCNGA	4 cut(s)	385, 552, 664, 947
Hpy188III	TCNNGA	6 cut(s)	434, 687, 746, 875, 962, 1197
Hpy8I	GTNNAC	5 cut(s)	247, 352, 425, 910, 1156
HpyAV	CCTTC	3 cut(s)	4, 842, 947
HpyCH4III	ACNGT	3 cut(s)	497, 523, 1081
HpyCH4V	TGCA	4 cut(s)	389, 604, 887, 1166
HpyF10VI	GCNNNNNNNGC	4 cut(s)	91, 100, 272, 719
HpyF3I	CTNAG	3 cut(s)	89, 382, 1026
Hsp92II	CATG	8 cut(s)	418, 437, 672, 700, 754, 1166, 1170, 1200
KspAI	GTTAAC	1 cut(s)	247
Kzo9I	GATC	7 cut(s)	45, 742, 879, 916, 958, 966, 1096
LmnI	GCTCC	3 cut(s)	832, 1071, 1105
Lsp1109I	GCAGC	1 cut(s)	448
LweI	GCATC	5 cut(s)	94, 190, 376, 436, 480
MaeI	CTAG	1 cut(s)	296
MaeIII	GTNAC	1 cut(s)	121
MalI	GATC	7 cut(s)	47, 744, 881, 918, 960, 968, 1098
MboI	GATC	7 cut(s)	45, 742, 879, 916, 958, 966, 1096
MboII	GAAGA	5 cut(s)	19, 449, 827, 1067, 1132
MflI	RGATCY	4 cut(s)	916, 958, 966, 1096
MhlI	GDGCHC	3 cut(s)	550, 1068, 1110
MlsI	TGGCCA	1 cut(s)	302
MluCI	AATT	1 cut(s)	168
MluNI	TGGCCA	1 cut(s)	302
MlyI	GAGTC	1 cut(s)	129
MmeI	TCCRAC	3 cut(s)	128, 716, 1114
MnlI	CCTC	7 cut(s)	91, 138, 166, 764, 846, 889, 1159
Mox20I	TGGCCA	1 cut(s)	302
Mph1103I	ATGCAT	1 cut(s)	1168
MroXI	GAANNNNTTC	1 cut(s)	155
MscI	TGGCCA	1 cut(s)	302
MseI	TTAA	5 cut(s)	65, 246, 330, 366, 482
Msp20I	TGGCCA	1 cut(s)	302
MspCI	CTTAAG	1 cut(s)	365
MspR9I	CCNGG	3 cut(s)	420, 724, 729
MvaI	CCWGG	3 cut(s)	420, 724, 729
MvnI	CGCG	1 cut(s)	279
MwoI	GCNNNNNNNGC	4 cut(s)	91, 100, 272, 719
NdeI	CATATG	1 cut(s)	809
NdeII	GATC	7 cut(s)	45, 742, 879, 916, 958, 966, 1096
NlaIII	CATG	8 cut(s)	418, 437, 672, 700, 754, 1166, 1170, 1200
NlaIV	GGNNCC	3 cut(s)	622, 828, 1067
NmuCI	GTSAC	1 cut(s)	121
NsiI	ATGCAT	1 cut(s)	1168
NspI	RCATGY	2 cut(s)	754, 1170
PagI	TCATGA	2 cut(s)	433, 1196
PceI	AGGCCT	1 cut(s)	727
PdmI	GAANNNNTTC	1 cut(s)	155
PfeI	GAWTC	3 cut(s)	151, 375, 665
PkrI	GCNGC	1 cut(s)	463
PleI	GAGTC	1 cut(s)	128
PpsI	GAGTC	1 cut(s)	128
PpuMI	RGGWCCY	1 cut(s)	1022
PsiI	TTATAA	1 cut(s)	501
Psp124BI	GAGCTC	1 cut(s)	550
Psp5II	RGGWCCY	1 cut(s)	1022
Psp6I	CCWGG	3 cut(s)	418, 722, 727
PspFI	CCCAGC	1 cut(s)	261
PspGI	CCWGG	3 cut(s)	418, 722, 727
PspN4I	GGNNCC	3 cut(s)	622, 828, 1067
PspPI	GGNCC	4 cut(s)	264, 813, 977, 1022
PspPPI	RGGWCCY	1 cut(s)	1022
PsuI	RGATCY	4 cut(s)	916, 958, 966, 1096
RsaI	GTAC	2 cut(s)	395, 992
RsaNI	GTAC	2 cut(s)	394, 991
SacI	GAGCTC	1 cut(s)	550
SaqAI	TTAA	5 cut(s)	65, 246, 330, 366, 482
SatI	GCNGC	1 cut(s)	462
Sau3AI	GATC	7 cut(s)	45, 742, 879, 916, 958, 966, 1096
Sau96I	GGNCC	4 cut(s)	264, 813, 977, 1022
SchI	GAGTC	1 cut(s)	129
ScrFI	CCNGG	3 cut(s)	420, 724, 729
SduI	GDGCHC	3 cut(s)	550, 1068, 1110
SfaNI	GCATC	5 cut(s)	94, 190, 376, 436, 480
SinI	GGWCC	2 cut(s)	977, 1022
SmlI	CTYRAG	2 cut(s)	365, 962
SmoI	CTYRAG	2 cut(s)	365, 962
Sse9I	AATT	1 cut(s)	168
SseBI	AGGCCT	1 cut(s)	727
SspMI	CTAG	1 cut(s)	296
SstI	GAGCTC	1 cut(s)	550
StuI	AGGCCT	1 cut(s)	727
StyD4I	CCNGG	3 cut(s)	418, 722, 727
StyI	CCWWGG	2 cut(s)	115, 1018
TaaI	ACNGT	3 cut(s)	497, 523, 1081
TaqI	TCGA	1 cut(s)	474
TasI	AATT	1 cut(s)	168
TfiI	GAWTC	3 cut(s)	151, 375, 665
Tru1I	TTAA	5 cut(s)	65, 246, 330, 366, 482
Tru9I	TTAA	5 cut(s)	65, 246, 330, 366, 482
TscAI	CASTG	4 cut(s)	21, 48, 220, 1122
TseFI	GTSAC	1 cut(s)	121
TseI	GCWGC	1 cut(s)	461
Tsp45I	GTSAC	1 cut(s)	121
TspDTI	ATGAA	6 cut(s)	450, 569, 657, 713, 717, 801
TspGWI	ACGGA	1 cut(s)	1141
TspRI	CASTG	4 cut(s)	21, 48, 220, 1122
Vha464I	CTTAAG	1 cut(s)	365
VpaK11BI	GGWCC	2 cut(s)	977, 1022
XceI	RCATGY	2 cut(s)	754, 1170
XcmI	CCANNNNNNNNNTGG	1 cut(s)	920
XmnI	GAANNNNTTC	1 cut(s)	155
XspI	CTAG	1 cut(s)	296
Zsp2I	ATGCAT	1 cut(s)	1168

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.