Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0003741

Physical Location & Seq

Genomic Coordinates Forward (+)

33855964 .. 33859201

Gene Structure 3238 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g37361.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1254 bp

ATGGTGAACATGAGGTGGAACAGTGGTGGTGATGCTGCTGTAACAAAGAGGATGATTGTACTGACGGTGTTGATGGTGATGTTAATGGGTGCTTACGCTTCACCGGTAAGACGAATGATGATGGCAGATATCAAAGAGCAGCAGAGACGGAATCTGCTTGCTAATGGGCTTGGAGTGACTCCTCCCATGGGGTGGAATAGTTGGAATCACTTCAACTGCAAGATTGATGAGAACATCATCAAAGCAACCGCTGATGCTCTGATTTCTACTGGTCTATCTAAACTTGGATACACCTATGTTAACATTGATGATTGTTGGGCTGAAGCAGCTCGTGATGACAAGGGAAATCTAGTGCCCAAGAATTCCACATTTCCATCTGGCATTAAAGCTCTTGCGGATTATGTGCACAGCAAGGGACTAAAGCTAGGAATCTACTCAGATGCAGGGTATTTTACTTGCAGCAAAACCATGCCTGGTTCACTTGGTCACGAGAAGCAAGATGCCAAAATTTTTGCTGATTGGGGTATTGATTATTTGAAGTATGACAACTGTAATACTGATAACTCCAAACCAACTGTTAGATATCCTGTCATGACCCGGGAACTGATGAAAGCAGACCGTCCCATATTCTTTTCTCTGTGTGAATGGGGAGATTTGCATCCTGCTTTATGGGGTGCTAAAGTTGGAAACAGCTGGAGAACTACTAATGACATTTCTGATACATGGGAAAGTATGATCTCCAGAGCAGACATGAATGAAGTTTATGCTGAATTTGCTCGACCTGGTGGTTGGAATGATCCCGACATGCTTGAGGTGGGAAATGGAGGAATGACAAAGGATGAATATGTAGTCCATTTTAGCATATGGGCCATATCTAAGGCTCCCCTTCTTATCGGTTGTGATGTGAGGAATATGACAAAAGAGACTATGGAGATCATTGCAAATGAAGAGGTTATCTCTGTCAACCAAGATCCACTTGGTGTCCAAGCTAAAAAGGTTAGAATGGAAGGAGACCTTGAGGTTTGGGCTGGCCCCCTTTCAGGCTACAGAGTTGCCTTACTCCTTGTCAACCGAGGGTCGTGGCGCACATCCATTACAGGCTACTGGGATGACATTGGTATCCCCCCAAACAGTGTTGTTGAAGCAAGAGATCTTTGGGAGCACAAGACACTGAAGAAAAGATTTGTTGGAAACTTGACGGCCACTATGGACTCCCATGCATGCAAAATGTATGTGCTGAAGCCAATCTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0009505 GO:0030312 GO:0044464 GO:0048046 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00052 ko00561 ko00600 ko00603 map00052 map00561 map00600 map00603

Pfam Domains

Protein Families

Melibiase_2 Melibiase_2_C

Protein Analysis

418

Amino Acids

46.68

Weight (kDa)

6.41

Isoelectric Point (pI)

23.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Melibiase_2	PF16499	60 - 324	1.6e-73	Alpha galactosidase A
Melibiase_C	PF17801	336 - 413	1.1e-16	Alpha galactosidase C-terminal beta sandwich domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003741)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08380 AT5G08380
fragaria_vesca	FvH4_2g12370 FvH4_2g12370 FvH4_2g12370 FvH4_4g37361
malus_domestica	MD13G1000400.v1.1 MD16G1012600.v1.1
prunus_persica	Prupe.1G352200_v2.0.a1 Prupe.1G352200_v2.0.a1
pyrus_communis	pycom13g00040 pycom16g01180 pycom2749g00030
rosa_chinensis	RchiOBHm_Chr4g0447241 RchiOBHm_Chr6g0272391
rosa_laevigata	RLG00000005594 RLG00000013676
rosa_multiflora	Rmu_co8492007.1_g000001 Rmu_sc0018949.1_g000001 Rmu_sc0018950.1_g000001
rosa_roxburghii	Rroxscaffold_5G00387600 Rroxscaffold_7G00196300
rosa_rugosa	Rorug04G0379000 Rorug06G0069000
rosa_samantha	Rh4AG440500 Rh4BG449500 Rh4CG466600 Rh4DG448000 Rh6AG184900 Rh6BG188200 Rh6CG186100 Rh6DG177900
rosa_wichuraiana	Rw4G037690 Rw6G015990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	192
AciI	CCGC	2 cut(s)	249, 395
AclWI	GGATC	2 cut(s)	791, 965
AcoI	YGGCCR	1 cut(s)	1200
AcsI	RAATTY	3 cut(s)	361, 507, 770
AcuI	CTGAAG	2 cut(s)	342, 1193
AdeI	CACNNNGTG	1 cut(s)	980
AfaI	GTAC	1 cut(s)	60
AfiI	CCNNNNNNNGG	3 cut(s)	188, 192, 1040
AgeI	ACCGGT	1 cut(s)	103
AgsI	TTSAA	3 cut(s)	214, 538, 1142
AjnI	CCWGG	2 cut(s)	472, 781
AluBI	AGCT	5 cut(s)	329, 389, 424, 693, 989
AluI	AGCT	5 cut(s)	329, 389, 424, 693, 989
Alw21I	GWGCWC	2 cut(s)	408, 1164
Alw26I	GTCTC	3 cut(s)	139, 917, 1005
Alw44I	GTGCAC	1 cut(s)	404
AlwI	GGATC	2 cut(s)	791, 965
Ama87I	CYCGRG	1 cut(s)	597
AoxI	GGCC	3 cut(s)	867, 1030, 1200
ApaLI	GTGCAC	1 cut(s)	404
ApeKI	GCWGC	4 cut(s)	35, 139, 326, 459
ApoI	RAATTY	3 cut(s)	361, 507, 770
AsiGI	ACCGGT	1 cut(s)	103
Asp700I	GAANNNNTTC	1 cut(s)	209
AspLEI	GCGC	1 cut(s)	1086
AspS9I	GGNCC	2 cut(s)	867, 1031
AsuC2I	CCSGG	2 cut(s)	598, 599
AsuHPI	GGTGA	4 cut(s)	16, 41, 88, 93
AvaI	CYCGRG	1 cut(s)	597
BaeGI	GKGCMC	2 cut(s)	357, 408
BaeI	ACNNNNGTAYC	2 cut(s)	1102, 1135
BauI	CACGAG	2 cut(s)	330, 488
Bbv12I	GWGCWC	2 cut(s)	408, 1164
BbvI	GCAGC	4 cut(s)	22, 151, 338, 471
BccI	CCATC	3 cut(s)	67, 115, 382
BceAI	ACGGC	1 cut(s)	1215
BciT130I	CCWGG	2 cut(s)	474, 783
BciVI	GTATCC	2 cut(s)	281, 1130
BcnI	CCSGG	2 cut(s)	598, 599
BcoDI	GTCTC	3 cut(s)	139, 917, 1005
BfaI	CTAG	3 cut(s)	350, 425, 1252
BfmI	CTRYAG	1 cut(s)	1045
BfuI	GTATCC	2 cut(s)	281, 1130
BglII	AGATCT	1 cut(s)	1150
BisI	GCNGC	4 cut(s)	36, 140, 327, 460
BlsI	GCNGC	4 cut(s)	37, 141, 328, 461
Bme1390I	CCNGG	4 cut(s)	474, 598, 599, 783
BmeT110I	CYCGRG	1 cut(s)	597
BmgT120I	GGNCC	2 cut(s)	867, 1031
BmiI	GGNNCC	2 cut(s)	882, 1033
BmrFI	CCNGG	4 cut(s)	474, 598, 599, 783
BmrI	ACTGGG	1 cut(s)	1114
BmsI	GCATC	5 cut(s)	22, 244, 430, 490, 667
BmuI	ACTGGG	1 cut(s)	1114
BplI	GAGNNNNNCTC	2 cut(s)	941, 973
BpmI	CTGGAG	2 cut(s)	715, 724
BpuEI	CTTGAG	2 cut(s)	830, 1037
BpuMI	CCSGG	2 cut(s)	598, 599
BsaBI	GATNNNNATC	1 cut(s)	657
BsaI	GGTCTC	1 cut(s)	1005
BsaJI	CCNNGG	3 cut(s)	186, 597, 1072
BsaWI	WCCGGW	1 cut(s)	103
Bsc4I	CCNNNNNNNGG	3 cut(s)	188, 192, 1040
Bse118I	RCCGGY	1 cut(s)	103
Bse1I	ACTGG	2 cut(s)	274, 1109
Bse3DI	GCAATG	1 cut(s)	936
Bse8I	GATNNNNATC	1 cut(s)	657
BseBI	CCWGG	2 cut(s)	474, 783
BseDI	CCNNGG	3 cut(s)	186, 597, 1072
BseGI	GGATG	5 cut(s)	57, 658, 844, 1088, 1114
BseJI	GATNNNNATC	1 cut(s)	657
BseLI	CCNNNNNNNGG	3 cut(s)	188, 192, 1040
BseMI	GCAATG	1 cut(s)	936
BseMII	CTCAG	1 cut(s)	450
BseNI	ACTGG	2 cut(s)	274, 1109
BseRI	GAGGAG	1 cut(s)	171
BseSI	GKGCMC	2 cut(s)	357, 408
BseXI	GCAGC	4 cut(s)	22, 151, 338, 471
BshFI	GGCC	3 cut(s)	869, 1032, 1202
BshTI	ACCGGT	1 cut(s)	103
BsiHKAI	GWGCWC	2 cut(s)	408, 1164
BsiHKCI	CYCGRG	1 cut(s)	597
BsiSI	CCGG	2 cut(s)	104, 598
BslFI	GGGAC	2 cut(s)	429, 606
BslI	CCNNNNNNNGG	3 cut(s)	188, 192, 1040
BsmAI	GTCTC	3 cut(s)	139, 917, 1005
BsmBI	CGTCTC	1 cut(s)	139
BsmFI	GGGAC	2 cut(s)	429, 606
BsnI	GGCC	3 cut(s)	869, 1032, 1202
Bso31I	GGTCTC	1 cut(s)	1005
BsoBI	CYCGRG	1 cut(s)	597
Bsp1286I	GDGCHC	3 cut(s)	357, 408, 1164
Bsp143I	GATC	5 cut(s)	735, 796, 933, 970, 1150
Bsp19I	CCATGG	1 cut(s)	186
BspACI	CCGC	2 cut(s)	249, 395
BspANI	GGCC	3 cut(s)	869, 1032, 1202
BspCNI	CTCAG	1 cut(s)	449
BspHI	TCATGA	1 cut(s)	591
BspLI	GGNNCC	2 cut(s)	882, 1033
BspPI	GGATC	2 cut(s)	791, 965
BspTNI	GGTCTC	1 cut(s)	1005
BsrDI	GCAATG	1 cut(s)	936
BsrFI	RCCGGY	1 cut(s)	103
BsrI	ACTGG	2 cut(s)	274, 1109
BssAI	RCCGGY	1 cut(s)	103
BssECI	CCNNGG	3 cut(s)	186, 597, 1072
BssMI	GATC	5 cut(s)	735, 796, 933, 970, 1150
BssSI	CACGAG	2 cut(s)	330, 488
BssT1I	CCWWGG	1 cut(s)	186
Bst2BI	CACGAG	2 cut(s)	330, 488
Bst2UI	CCWGG	2 cut(s)	474, 783
Bst4CI	ACNGT	6 cut(s)	23, 67, 551, 577, 620, 1133
Bst6I	CTCTTC	1 cut(s)	942
BstC8I	GCNNGC	3 cut(s)	159, 1030, 1222
BstDEI	CTNAG	2 cut(s)	436, 876
BstDSI	CCRYGG	1 cut(s)	186
BstF5I	GGATG	5 cut(s)	57, 658, 844, 1088, 1114
BstHHI	GCGC	1 cut(s)	1086
BstKTI	GATC	5 cut(s)	738, 799, 936, 973, 1153
BstMAI	GTCTC	3 cut(s)	139, 917, 1005
BstMBI	GATC	5 cut(s)	735, 796, 933, 970, 1150
BstMWI	GCNNNNNNNGC	2 cut(s)	326, 773
BstNI	CCWGG	2 cut(s)	474, 783
BstNSI	RCATGY	2 cut(s)	808, 1224
BstSCI	CCNGG	4 cut(s)	472, 596, 597, 781
BstSFI	CTRYAG	1 cut(s)	1045
BstSLI	GKGCMC	2 cut(s)	357, 408
BstV1I	GCAGC	4 cut(s)	22, 151, 338, 471
BstX2I	RGATCY	2 cut(s)	970, 1150
BstYI	RGATCY	2 cut(s)	970, 1150
BsuI	GTATCC	2 cut(s)	281, 1130
BsuRI	GGCC	3 cut(s)	869, 1032, 1202
BtgI	CCRYGG	1 cut(s)	186
BtsCI	GGATG	5 cut(s)	57, 658, 844, 1088, 1114
BtsIMutI	CAGTG	3 cut(s)	28, 1138, 1169
Cac8I	GCNNGC	3 cut(s)	159, 1030, 1222
CciI	TCATGA	1 cut(s)	591
CfoI	GCGC	1 cut(s)	1086
Cfr10I	RCCGGY	1 cut(s)	103
Cfr13I	GGNCC	2 cut(s)	867, 1031
Cfr9I	CCCGGG	1 cut(s)	597
CsiI	ACCWGGT	1 cut(s)	781
Csp6I	GTAC	1 cut(s)	59
CspAI	ACCGGT	1 cut(s)	103
CviAII	CATG	9 cut(s)	10, 187, 469, 592, 723, 751, 805, 1217, 1221
CviQI	GTAC	1 cut(s)	59
DdeI	CTNAG	2 cut(s)	436, 876
DpnI	GATC	5 cut(s)	737, 798, 935, 972, 1152
DpnII	GATC	5 cut(s)	735, 796, 933, 970, 1150
DraIII	CACNNNGTG	1 cut(s)	980
EaeI	YGGCCR	1 cut(s)	1200
Eam1104I	CTCTTC	1 cut(s)	942
EarI	CTCTTC	1 cut(s)	942
Eco130I	CCWWGG	1 cut(s)	186
Eco31I	GGTCTC	1 cut(s)	1005
Eco32I	GATATC	2 cut(s)	130, 584
Eco57I	CTGAAG	2 cut(s)	342, 1193
Eco88I	CYCGRG	1 cut(s)	597
EcoRI	GAATTC	1 cut(s)	361
EcoRII	CCWGG	2 cut(s)	472, 781
EcoRV	GATATC	2 cut(s)	130, 584
EcoT14I	CCWWGG	1 cut(s)	186
EcoT22I	ATGCAT	1 cut(s)	1222
ErhI	CCWWGG	1 cut(s)	186
Esp3I	CGTCTC	1 cut(s)	139
FaeI	CATG	9 cut(s)	13, 190, 472, 595, 726, 754, 808, 1220, 1224
FalI	AAGNNNNNCTT	4 cut(s)	960, 992, 999, 1031
FaqI	GGGAC	2 cut(s)	429, 606
FatI	CATG	9 cut(s)	9, 186, 468, 591, 722, 750, 804, 1216, 1220
FauNDI	CATATG	1 cut(s)	863
Fnu4HI	GCNGC	4 cut(s)	36, 140, 327, 460
FokI	GGATG	5 cut(s)	64, 645, 851, 1075, 1121
Fsp4HI	GCNGC	4 cut(s)	36, 140, 327, 460
FspBI	CTAG	3 cut(s)	350, 425, 1252
GlaI	GCGC	1 cut(s)	1085
GluI	GCNGC	4 cut(s)	36, 140, 327, 460
GsuI	CTGGAG	2 cut(s)	715, 724
HaeIII	GGCC	3 cut(s)	869, 1032, 1202
HapII	CCGG	2 cut(s)	104, 598
HhaI	GCGC	1 cut(s)	1086
Hin1II	CATG	9 cut(s)	13, 190, 472, 595, 726, 754, 808, 1220, 1224
Hin6I	GCGC	1 cut(s)	1084
HinP1I	GCGC	1 cut(s)	1084
HincII	GTYRAC	3 cut(s)	301, 964, 1069
HindII	GTYRAC	3 cut(s)	301, 964, 1069
HinfI	GANTC	5 cut(s)	151, 178, 205, 429, 1211
HpaI	GTTAAC	1 cut(s)	301
HpaII	CCGG	2 cut(s)	104, 598
HphI	GGTGA	4 cut(s)	16, 41, 88, 93
Hpy166II	GTNNAC	6 cut(s)	7, 301, 406, 479, 964, 1069
Hpy188I	TCNGA	3 cut(s)	261, 439, 718
Hpy188III	TCNNGA	5 cut(s)	332, 488, 592, 741, 800
Hpy8I	GTNNAC	6 cut(s)	7, 301, 406, 479, 964, 1069
HpyAV	CCTTC	2 cut(s)	896, 1001
HpyCH4III	ACNGT	6 cut(s)	23, 67, 551, 577, 620, 1133
HpyCH4V	TGCA	8 cut(s)	219, 406, 443, 459, 658, 941, 1220, 1224
HpyF10VI	GCNNNNNNNGC	2 cut(s)	326, 773
HpyF3I	CTNAG	2 cut(s)	436, 876
Hsp92II	CATG	9 cut(s)	13, 190, 472, 595, 726, 754, 808, 1220, 1224
HspAI	GCGC	1 cut(s)	1084
KspAI	GTTAAC	1 cut(s)	301
Kzo9I	GATC	5 cut(s)	735, 796, 933, 970, 1150
LmnI	GCTCC	2 cut(s)	886, 1159
Lsp1109I	GCAGC	4 cut(s)	22, 151, 338, 471
LweI	GCATC	5 cut(s)	22, 244, 430, 490, 667
MabI	ACCWGGT	1 cut(s)	781
MaeI	CTAG	3 cut(s)	350, 425, 1252
MaeIII	GTNAC	3 cut(s)	40, 175, 485
MalI	GATC	5 cut(s)	737, 798, 935, 972, 1152
MboI	GATC	5 cut(s)	735, 796, 933, 970, 1150
MboII	GAAGA	2 cut(s)	959, 1186
MflI	RGATCY	2 cut(s)	970, 1150
MhlI	GDGCHC	3 cut(s)	357, 408, 1164
MluCI	AATT	3 cut(s)	361, 507, 770
MlyI	GAGTC	2 cut(s)	172, 1205
MmeI	TCCRAC	4 cut(s)	182, 664, 770, 1168
MnlI	CCTC	9 cut(s)	6, 42, 192, 805, 818, 900, 943, 1012, 1067
Mph1103I	ATGCAT	1 cut(s)	1222
MroXI	GAANNNNTTC	1 cut(s)	209
MseI	TTAA	3 cut(s)	83, 300, 384
MspA1I	CMGCKG	2 cut(s)	251, 693
MspI	CCGG	2 cut(s)	104, 598
MspR9I	CCNGG	4 cut(s)	474, 598, 599, 783
MvaI	CCWGG	2 cut(s)	474, 783
MwoI	GCNNNNNNNGC	2 cut(s)	326, 773
NciI	CCSGG	2 cut(s)	598, 599
NcoI	CCATGG	1 cut(s)	186
NdeI	CATATG	1 cut(s)	863
NdeII	GATC	5 cut(s)	735, 796, 933, 970, 1150
NlaIII	CATG	9 cut(s)	13, 190, 472, 595, 726, 754, 808, 1220, 1224
NlaIV	GGNNCC	2 cut(s)	882, 1033
NmuCI	GTSAC	2 cut(s)	175, 485
NsiI	ATGCAT	1 cut(s)	1222
NspI	RCATGY	2 cut(s)	808, 1224
PaeI	GCATGC	1 cut(s)	1224
PagI	TCATGA	1 cut(s)	591
PdmI	GAANNNNTTC	1 cut(s)	209
PfeI	GAWTC	3 cut(s)	151, 205, 429
PflMI	CCANNNNNTGG	1 cut(s)	192
PinAI	ACCGGT	1 cut(s)	103
PkrI	GCNGC	4 cut(s)	37, 141, 328, 461
PleI	GAGTC	2 cut(s)	172, 1205
PpsI	GAGTC	2 cut(s)	172, 1205
Psp6I	CCWGG	2 cut(s)	472, 781
PspGI	CCWGG	2 cut(s)	472, 781
PspN4I	GGNNCC	2 cut(s)	882, 1033
PspPI	GGNCC	2 cut(s)	867, 1031
PsuI	RGATCY	2 cut(s)	970, 1150
PvuII	CAGCTG	1 cut(s)	693
RsaI	GTAC	1 cut(s)	60
RsaNI	GTAC	1 cut(s)	59
SaqAI	TTAA	3 cut(s)	83, 300, 384
SatI	GCNGC	4 cut(s)	36, 140, 327, 460
Sau3AI	GATC	5 cut(s)	735, 796, 933, 970, 1150
Sau96I	GGNCC	2 cut(s)	867, 1031
SchI	GAGTC	2 cut(s)	172, 1205
ScrFI	CCNGG	4 cut(s)	474, 598, 599, 783
SduI	GDGCHC	3 cut(s)	357, 408, 1164
SexAI	ACCWGGT	1 cut(s)	781
SfaNI	GCATC	5 cut(s)	22, 244, 430, 490, 667
SfcI	CTRYAG	1 cut(s)	1045
SmaI	CCCGGG	1 cut(s)	599
SmlI	CTYRAG	2 cut(s)	809, 1016
SmoI	CTYRAG	2 cut(s)	809, 1016
SphI	GCATGC	1 cut(s)	1224
Sse9I	AATT	3 cut(s)	361, 507, 770
SsiI	CCGC	2 cut(s)	249, 395
SspMI	CTAG	3 cut(s)	350, 425, 1252
StyD4I	CCNGG	4 cut(s)	472, 596, 597, 781
StyI	CCWWGG	1 cut(s)	186
TaaI	ACNGT	6 cut(s)	23, 67, 551, 577, 620, 1133
TaqI	TCGA	1 cut(s)	778
TasI	AATT	3 cut(s)	361, 507, 770
TatI	WGTACW	1 cut(s)	58
TfiI	GAWTC	3 cut(s)	151, 205, 429
Tru1I	TTAA	3 cut(s)	83, 300, 384
Tru9I	TTAA	3 cut(s)	83, 300, 384
TscAI	CASTG	3 cut(s)	28, 1138, 1176
TseFI	GTSAC	2 cut(s)	175, 485
TseI	GCWGC	4 cut(s)	35, 139, 326, 459
Tsp45I	GTSAC	2 cut(s)	175, 485
TspDTI	ATGAA	5 cut(s)	623, 767, 771, 855, 960
TspGWI	ACGGA	1 cut(s)	163
TspMI	CCCGGG	1 cut(s)	597
TspRI	CASTG	3 cut(s)	28, 1138, 1176
Van91I	CCANNNNNTGG	1 cut(s)	192
VneI	GTGCAC	1 cut(s)	404
XapI	RAATTY	3 cut(s)	361, 507, 770
XceI	RCATGY	2 cut(s)	808, 1224
XcmI	CCANNNNNNNNNTGG	1 cut(s)	974
XmaI	CCCGGG	1 cut(s)	597
XmnI	GAANNNNTTC	1 cut(s)	209
XspI	CTAG	3 cut(s)	350, 425, 1252
Zsp2I	ATGCAT	1 cut(s)	1222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.