Prupe.1G352200_v2.0.a1

Alpha-galactosidase

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Forward (+)
32748205 .. 32751957
3753 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G352200.2

Sequence Viewer

Length: 1272 bp
ATGTTGAACATGAGGAAAAAGGACGCCGACGGTGCAGTAGTGCCAACAACGACGATTGTGATGGCGTTGATGCTCTTCTCATTTATATCACCACCCATGTTAATGGGTGTTTCTGCTTCGCAGAGAACAAGAATGATGGTGCCAGAAACCCAAGAGCAGCACAGACGGAATCTGCTTGCCAATGGGCTTGCATTGACTCCTCCCATGGGGTGGAATAGTTGGAATCACTTCAACTGCAAAATTGATGAGAAAATCATCAAAGCAACCGCTGATGCTCTGATTTCCACCGGGCTCTCTAAACTTGGATATACCTACATTAACATAGATGATTGCTGGGCCGAAATTGCTCGTGATGACAAGGGTAATCTAGCGCCCAAGAAATCAACCTTTCCATCAGGCATTAAATCTCTTGCGGATTATGTCCACAGTAAGGGTCTTAAGCTAGGAATCTACTCAGATGCAGGGTACTTTACTTGCAGCAAAACAATGCCTGGTTCACTTGGCCATGAAGAACAAGATGCCAACACATTTGCTGCTTGGGGAATTGATTATTTGAAGTATGATAACTGTAATAATGATGGCTCAACGCCAACTGCTAGATATCCCGTAATGACCCGAGCTCTGATGAAAGCAGGCCGTCCCATATTCTTTTCTCTTTGTGAATGGGGAGATATGCACCCTGCTCTATGGGGTGCTAAAGTAGGAAATAGTTGGAGAACTACTAAAGACATTTCTGATACATGGGAAAGTATGGTCTCTAGAGCAGACATGAACGAAATTTATGCTGAATTTGCCAGACCCGGTGGTTGGAATGATCCCGACATGCTTGAAGTGGGGAACGGAGGAATGACAAAAGATGAATATGTAGTCCATTTTAGCATATGGGCCATTTCTAAGGCTCCCCTTCTTCTTGGTTGTGATGTGAGGAATATCACAAAAGAGACAATGGAGATCGTTGCAAATAAAGAAGTTATCTCTGTAAACCAAGATCCACTTGGTGTGCAAGCCAAAAAGGTCAGAATGGAAGGAGATCTTGAGGTTTGGGCTGGTCCGCTCTCAGGCTACAGAGTAGCTTTACTCCTTGTCAACCAAGGCCCTTCGCGAACTTCCATTACAGCTAACTGGGATGATGTTGGAATCCCCACAAACAGTGTTGTTGAAGCAAGAGACCTTTGGGAGCACAAGACATTGAATGCACGATTTGTTGGAAACTTGACAGCCACCGTGGGCTCTCATGCATGCAAAATGTATGTTTTGAAGCCAGTCTCGTAA

Protein Analysis

424

Amino Acids

46.75

Weight (kDa)

6.47

Isoelectric Point (pI)

24.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 139
AccB7I CCANNNNNTGG 1 cut(s) 210
AccBSI CCGCTC 1 cut(s) 1054
AccII CGCG 1 cut(s) 1102
AciI CCGC 3 cut(s) 267, 413, 1052
AclWI GGATC 2 cut(s) 809, 983
AcoI YGGCCR 1 cut(s) 502
AcsI RAATTY 2 cut(s) 777, 788
AcyI GRCGYC 1 cut(s) 24
AdeI CACNNNGTG 1 cut(s) 998
AfaI GTAC 1 cut(s) 467
AfiI CCNNNNNNNGG 5 cut(s) 206, 210, 430, 807, 1058
AflII CTTAAG 1 cut(s) 437
AgsI TTSAA 7 cut(s) 7, 232, 556, 830, 1160, 1192, 1258
AjnI CCWGG 1 cut(s) 490
AluBI AGCT 4 cut(s) 442, 620, 1073, 1118
AluI AGCT 4 cut(s) 442, 620, 1073, 1118
Alw21I GWGCWC 2 cut(s) 622, 1182
Alw26I GTCTC 3 cut(s) 760, 935, 1161
AlwI GGATC 2 cut(s) 809, 983
Ama87I CYCGRG 1 cut(s) 615
AoxI GGCC 5 cut(s) 336, 502, 634, 885, 1093
ApeKI GCWGC 3 cut(s) 157, 477, 533
ApoI RAATTY 2 cut(s) 777, 788
Asp700I GAANNNNTTC 1 cut(s) 227
AspLEI GCGC 1 cut(s) 373
AspS9I GGNCC 4 cut(s) 336, 885, 1049, 1094
AsuC2I CCSGG 2 cut(s) 289, 801
AsuHPI GGTGA 1 cut(s) 81
AvaI CYCGRG 1 cut(s) 615
AvaII GGWCC 1 cut(s) 1049
BalI TGGCCA 1 cut(s) 504
BanI GGYRCC 1 cut(s) 139
BanII GRGCYC 3 cut(s) 294, 622, 1232
BauI CACGAG 1 cut(s) 348
Bbv12I GWGCWC 2 cut(s) 622, 1182
BbvI GCAGC 3 cut(s) 169, 489, 520
BccI CCATC 4 cut(s) 55, 130, 400, 572
BceAI ACGGC 1 cut(s) 621
BcgI CGANNNNNNTGC 2 cut(s) 764, 798
BciT130I CCWGG 1 cut(s) 492
BcnI CCSGG 2 cut(s) 289, 801
BcoDI GTCTC 3 cut(s) 760, 935, 1161
BfaI CTAG 4 cut(s) 368, 443, 597, 759
BfmI CTRYAG 1 cut(s) 1063
BfoI RGCGCY 1 cut(s) 374
BfrI CTTAAG 1 cut(s) 437
BglII AGATCT 1 cut(s) 1030
BisI GCNGC 3 cut(s) 158, 478, 534
BlsI GCNGC 3 cut(s) 159, 479, 535
Bme1390I CCNGG 3 cut(s) 289, 492, 801
Bme18I GGWCC 1 cut(s) 1049
BmeT110I CYCGRG 1 cut(s) 615
BmgT120I GGNCC 4 cut(s) 336, 885, 1049, 1094
BmiI GGNNCC 2 cut(s) 141, 900
BmrFI CCNGG 3 cut(s) 289, 492, 801
BmrI ACTGGG 1 cut(s) 1132
BmsI GCATC 4 cut(s) 60, 262, 448, 508
BmuI ACTGGG 1 cut(s) 1132
BpuEI CTTGAG 1 cut(s) 1055
BpuMI CCSGG 2 cut(s) 289, 801
BsaHI GRCGYC 1 cut(s) 24
BsaI GGTCTC 2 cut(s) 760, 1161
BsaJI CCNNGG 3 cut(s) 204, 1090, 1224
Bsc4I CCNNNNNNNGG 5 cut(s) 206, 210, 430, 807, 1058
Bse1I ACTGG 2 cut(s) 1127, 1262
BseBI CCWGG 1 cut(s) 492
BseDI CCNNGG 3 cut(s) 204, 1090, 1224
BseGI GGATG 1 cut(s) 1132
BseLI CCNNNNNNNGG 5 cut(s) 206, 210, 430, 807, 1058
BseMII CTCAG 2 cut(s) 468, 1071
BseNI ACTGG 2 cut(s) 1127, 1262
BseRI GAGGAG 1 cut(s) 189
BseXI GCAGC 3 cut(s) 169, 489, 520
BseYI CCCAGC 1 cut(s) 333
BsgI GTGCAG 1 cut(s) 54
Bsh1236I CGCG 1 cut(s) 1102
BshFI GGCC 5 cut(s) 338, 504, 636, 887, 1095
BshNI GGYRCC 1 cut(s) 139
BsiHKAI GWGCWC 2 cut(s) 622, 1182
BsiHKCI CYCGRG 1 cut(s) 615
BsiSI CCGG 2 cut(s) 288, 801
BslFI GGGAC 1 cut(s) 624
BslI CCNNNNNNNGG 5 cut(s) 206, 210, 430, 807, 1058
BsmAI GTCTC 3 cut(s) 760, 935, 1161
BsmFI GGGAC 1 cut(s) 624
BsmI GAATGC 1 cut(s) 1198
BsnI GGCC 5 cut(s) 338, 504, 636, 887, 1095
Bso31I GGTCTC 2 cut(s) 760, 1161
BsoBI CYCGRG 1 cut(s) 615
Bsp1286I GDGCHC 4 cut(s) 294, 622, 1182, 1232
Bsp143I GATC 4 cut(s) 814, 951, 988, 1030
Bsp19I CCATGG 1 cut(s) 204
Bsp68I TCGCGA 1 cut(s) 1102
BspACI CCGC 3 cut(s) 267, 413, 1052
BspANI GGCC 5 cut(s) 338, 504, 636, 887, 1095
BspCNI CTCAG 2 cut(s) 467, 1070
BspFNI CGCG 1 cut(s) 1102
BspLI GGNNCC 2 cut(s) 141, 900
BspPI GGATC 2 cut(s) 809, 983
BspQI GCTCTTC 1 cut(s) 80
BspT107I GGYRCC 1 cut(s) 139
BspTI CTTAAG 1 cut(s) 437
BspTNI GGTCTC 2 cut(s) 760, 1161
BsrBI CCGCTC 1 cut(s) 1054
BsrI ACTGG 2 cut(s) 1127, 1262
BssECI CCNNGG 3 cut(s) 204, 1090, 1224
BssMI GATC 4 cut(s) 814, 951, 988, 1030
BssNI GRCGYC 1 cut(s) 24
BssSI CACGAG 1 cut(s) 348
BssT1I CCWWGG 2 cut(s) 204, 1090
Bst2BI CACGAG 1 cut(s) 348
Bst2UI CCWGG 1 cut(s) 492
Bst4CI ACNGT 5 cut(s) 32, 428, 569, 1151, 1225
Bst6I CTCTTC 1 cut(s) 80
BstACI GRCGYC 1 cut(s) 24
BstAFI CTTAAG 1 cut(s) 437
BstC8I GCNNGC 5 cut(s) 177, 189, 634, 1005, 1240
BstDEI CTNAG 3 cut(s) 454, 894, 1057
BstDSI CCRYGG 2 cut(s) 204, 1224
BstF5I GGATG 1 cut(s) 1132
BstFNI CGCG 1 cut(s) 1102
BstH2I RGCGCY 1 cut(s) 374
BstHHI GCGC 1 cut(s) 373
BstKTI GATC 4 cut(s) 817, 954, 991, 1033
BstMAI GTCTC 3 cut(s) 760, 935, 1161
BstMBI GATC 4 cut(s) 814, 951, 988, 1030
BstMWI GCNNNNNNNGC 3 cut(s) 32, 344, 791
BstNI CCWGG 1 cut(s) 492
BstNSI RCATGY 2 cut(s) 826, 1242
BstSCI CCNGG 3 cut(s) 287, 490, 799
BstSFI CTRYAG 1 cut(s) 1063
BstUI CGCG 1 cut(s) 1102
BstV1I GCAGC 3 cut(s) 169, 489, 520
BstX2I RGATCY 2 cut(s) 988, 1030
BstXI CCANNNNNNTGG 1 cut(s) 103
BstYI RGATCY 2 cut(s) 988, 1030
BsuRI GGCC 5 cut(s) 338, 504, 636, 887, 1095
BtgI CCRYGG 2 cut(s) 204, 1224
BtsCI GGATG 1 cut(s) 1132
BtsIMutI CAGTG 1 cut(s) 1156
BtuMI TCGCGA 1 cut(s) 1102
Cac8I GCNNGC 5 cut(s) 177, 189, 634, 1005, 1240
CfoI GCGC 1 cut(s) 373
Cfr13I GGNCC 4 cut(s) 336, 885, 1049, 1094
CseI GACGC 1 cut(s) 32
Csp6I GTAC 1 cut(s) 466
CviAII CATG 9 cut(s) 10, 97, 205, 506, 741, 769, 823, 1235, 1239
CviQI GTAC 1 cut(s) 466
DdeI CTNAG 3 cut(s) 454, 894, 1057
DpnI GATC 4 cut(s) 816, 953, 990, 1032
DpnII GATC 4 cut(s) 814, 951, 988, 1030
DraIII CACNNNGTG 1 cut(s) 998
EaeI YGGCCR 1 cut(s) 502
Eam1104I CTCTTC 1 cut(s) 80
EarI CTCTTC 1 cut(s) 80
Ecl136II GAGCTC 1 cut(s) 620
Eco130I CCWWGG 2 cut(s) 204, 1090
Eco24I GRGCYC 3 cut(s) 294, 622, 1232
Eco31I GGTCTC 2 cut(s) 760, 1161
Eco32I GATATC 1 cut(s) 602
Eco47I GGWCC 1 cut(s) 1049
Eco53kI GAGCTC 1 cut(s) 620
Eco88I CYCGRG 1 cut(s) 615
EcoICRI GAGCTC 1 cut(s) 620
EcoO109I RGGNCCY 1 cut(s) 1094
EcoRII CCWGG 1 cut(s) 490
EcoRV GATATC 1 cut(s) 602
EcoT14I CCWWGG 2 cut(s) 204, 1090
EcoT22I ATGCAT 1 cut(s) 1240
EcoT38I GRGCYC 3 cut(s) 294, 622, 1232
ErhI CCWWGG 2 cut(s) 204, 1090
FaeI CATG 9 cut(s) 13, 100, 208, 509, 744, 772, 826, 1238, 1242
FalI AAGNNNNNCTT 4 cut(s) 978, 1010, 1017, 1049
FaqI GGGAC 1 cut(s) 624
FatI CATG 9 cut(s) 9, 96, 204, 505, 740, 768, 822, 1234, 1238
FauNDI CATATG 1 cut(s) 881
Fnu4HI GCNGC 3 cut(s) 158, 478, 534
FokI GGATG 1 cut(s) 1139
FriOI GRGCYC 3 cut(s) 294, 622, 1232
Fsp4HI GCNGC 3 cut(s) 158, 478, 534
FspBI CTAG 4 cut(s) 368, 443, 597, 759
GlaI GCGC 1 cut(s) 372
GluI GCNGC 3 cut(s) 158, 478, 534
GsaI CCCAGC 1 cut(s) 337
HaeII RGCGCY 1 cut(s) 374
HaeIII GGCC 5 cut(s) 338, 504, 636, 887, 1095
HapII CCGG 2 cut(s) 288, 801
HgaI GACGC 1 cut(s) 32
HhaI GCGC 1 cut(s) 373
Hin1I GRCGYC 1 cut(s) 24
Hin1II CATG 9 cut(s) 13, 100, 208, 509, 744, 772, 826, 1238, 1242
Hin6I GCGC 1 cut(s) 371
HinP1I GCGC 1 cut(s) 371
HincII GTYRAC 1 cut(s) 1087
HindII GTYRAC 1 cut(s) 1087
HinfI GANTC 5 cut(s) 169, 196, 223, 447, 1137
HpaII CCGG 2 cut(s) 288, 801
HphI GGTGA 1 cut(s) 81
Hpy166II GTNNAC 4 cut(s) 424, 497, 982, 1087
Hpy188I TCNGA 5 cut(s) 279, 457, 624, 736, 1019
Hpy188III TCNNGA 5 cut(s) 350, 759, 818, 1034, 1101
Hpy8I GTNNAC 4 cut(s) 424, 497, 982, 1087
Hpy99I CGWCG 2 cut(s) 32, 55
HpyAV CCTTC 3 cut(s) 914, 1019, 1107
HpyCH4III ACNGT 5 cut(s) 32, 428, 569, 1151, 1225
HpyF10VI GCNNNNNNNGC 3 cut(s) 32, 344, 791
HpyF3I CTNAG 3 cut(s) 454, 894, 1057
Hsp92I GRCGYC 1 cut(s) 24
Hsp92II CATG 9 cut(s) 13, 100, 208, 509, 744, 772, 826, 1238, 1242
HspAI GCGC 1 cut(s) 371
Kzo9I GATC 4 cut(s) 814, 951, 988, 1030
LguI GCTCTTC 1 cut(s) 80
LmnI GCTCC 2 cut(s) 904, 1177
Lsp1109I GCAGC 3 cut(s) 169, 489, 520
LweI GCATC 4 cut(s) 60, 262, 448, 508
MaeI CTAG 4 cut(s) 368, 443, 597, 759
MalI GATC 4 cut(s) 816, 953, 990, 1032
MbiI CCGCTC 1 cut(s) 1054
MboI GATC 4 cut(s) 814, 951, 988, 1030
MboII GAAGA 3 cut(s) 67, 521, 899
MflI RGATCY 2 cut(s) 988, 1030
MhlI GDGCHC 4 cut(s) 294, 622, 1182, 1232
MlsI TGGCCA 1 cut(s) 504
MluCI AATT 5 cut(s) 240, 342, 543, 777, 788
MluNI TGGCCA 1 cut(s) 504
MlyI GAGTC 1 cut(s) 190
MmeI TCCRAC 5 cut(s) 200, 692, 788, 1114, 1186
MnlI CCTC 5 cut(s) 6, 210, 836, 918, 1030
Mox20I TGGCCA 1 cut(s) 504
Mph1103I ATGCAT 1 cut(s) 1240
MroXI GAANNNNTTC 1 cut(s) 227
MscI TGGCCA 1 cut(s) 504
MseI TTAA 4 cut(s) 101, 318, 402, 438
MslI CAYNNNNRTG 1 cut(s) 101
Msp20I TGGCCA 1 cut(s) 504
MspA1I CMGCKG 1 cut(s) 269
MspCI CTTAAG 1 cut(s) 437
MspI CCGG 2 cut(s) 288, 801
MspR9I CCNGG 3 cut(s) 289, 492, 801
Mva1269I GAATGC 1 cut(s) 1198
MvaI CCWGG 1 cut(s) 492
MvnI CGCG 1 cut(s) 1102
MwoI GCNNNNNNNGC 3 cut(s) 32, 344, 791
NciI CCSGG 2 cut(s) 289, 801
NcoI CCATGG 1 cut(s) 204
NdeI CATATG 1 cut(s) 881
NdeII GATC 4 cut(s) 814, 951, 988, 1030
NlaIII CATG 9 cut(s) 13, 100, 208, 509, 744, 772, 826, 1238, 1242
NlaIV GGNNCC 2 cut(s) 141, 900
NruI TCGCGA 1 cut(s) 1102
NsiI ATGCAT 1 cut(s) 1240
NspI RCATGY 2 cut(s) 826, 1242
PaeI GCATGC 1 cut(s) 1242
PciSI GCTCTTC 1 cut(s) 80
PctI GAATGC 1 cut(s) 1198
PdmI GAANNNNTTC 1 cut(s) 227
PfeI GAWTC 4 cut(s) 169, 223, 447, 1137
PflMI CCANNNNNTGG 1 cut(s) 210
PkrI GCNGC 3 cut(s) 159, 479, 535
PleI GAGTC 1 cut(s) 190
PpsI GAGTC 1 cut(s) 190
Psp124BI GAGCTC 1 cut(s) 622
Psp6I CCWGG 1 cut(s) 490
PspFI CCCAGC 1 cut(s) 333
PspGI CCWGG 1 cut(s) 490
PspN4I GGNNCC 2 cut(s) 141, 900
PspPI GGNCC 4 cut(s) 336, 885, 1049, 1094
PsrI GAACNNNNNNTAC 2 cut(s) 1096, 1128
PsuI RGATCY 2 cut(s) 988, 1030
RruI TCGCGA 1 cut(s) 1102
RsaI GTAC 1 cut(s) 467
RsaNI GTAC 1 cut(s) 466
RseI CAYNNNNRTG 1 cut(s) 101
SacI GAGCTC 1 cut(s) 622
SapI GCTCTTC 1 cut(s) 80
SaqAI TTAA 4 cut(s) 101, 318, 402, 438
SatI GCNGC 3 cut(s) 158, 478, 534
Sau3AI GATC 4 cut(s) 814, 951, 988, 1030
Sau96I GGNCC 4 cut(s) 336, 885, 1049, 1094
SchI GAGTC 1 cut(s) 190
ScrFI CCNGG 3 cut(s) 289, 492, 801
SduI GDGCHC 4 cut(s) 294, 622, 1182, 1232
SetI ASST 9 cut(s) 314, 389, 444, 622, 1017, 1041, 1075, 1120, 1173
SfaNI GCATC 4 cut(s) 60, 262, 448, 508
SfcI CTRYAG 1 cut(s) 1063
SinI GGWCC 1 cut(s) 1049
SmiMI CAYNNNNRTG 1 cut(s) 101
SmlI CTYRAG 2 cut(s) 437, 1034
SmoI CTYRAG 2 cut(s) 437, 1034
SphI GCATGC 1 cut(s) 1242
Sse9I AATT 5 cut(s) 240, 342, 543, 777, 788
SsiI CCGC 3 cut(s) 267, 413, 1052
SspMI CTAG 4 cut(s) 368, 443, 597, 759
SstI GAGCTC 1 cut(s) 622
StyD4I CCNGG 3 cut(s) 287, 490, 799
StyI CCWWGG 2 cut(s) 204, 1090
TaaI ACNGT 5 cut(s) 32, 428, 569, 1151, 1225
TasI AATT 5 cut(s) 240, 342, 543, 777, 788
TfiI GAWTC 4 cut(s) 169, 223, 447, 1137
Tru1I TTAA 4 cut(s) 101, 318, 402, 438
Tru9I TTAA 4 cut(s) 101, 318, 402, 438
TscAI CASTG 1 cut(s) 1156
TseI GCWGC 3 cut(s) 157, 477, 533
TspDTI ATGAA 4 cut(s) 522, 641, 785, 873
TspGWI ACGGA 2 cut(s) 181, 855
TspRI CASTG 1 cut(s) 1156
Van91I CCANNNNNTGG 1 cut(s) 210
Vha464I CTTAAG 1 cut(s) 437
VpaK11BI GGWCC 1 cut(s) 1049
XapI RAATTY 2 cut(s) 777, 788
XbaI TCTAGA 1 cut(s) 758
XceI RCATGY 2 cut(s) 826, 1242
XcmI CCANNNNNNNNNTGG 1 cut(s) 992
XmnI GAANNNNTTC 1 cut(s) 227
XspI CTAG 4 cut(s) 368, 443, 597, 759
Zsp2I ATGCAT 1 cut(s) 1240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.