Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8492007.1

Orthogroup ID

OG0003741

Physical Location & Seq

Genomic Coordinates Reverse (-)

227 .. 1943

Gene Structure 1717 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8492007.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

atgcctggttcacttggtcacgaggaacaagatgccaaaatttttgctgcatggggtattgattatttgaagtatgacaactgtaatactgatggctccaaaccaactgttagatatcctgtcatgacccgagcactgatgaaagcagaccgtcccatattcttttctctgtgtgaatggggagatttgcatcctgctttatggggtgctaaagtcggaaacagctggagaactactaatgacatttctgatacatgggaaagtatggtctccagagcagacatgaatgaagtttatgctgaatatgccagacctggtggttggaatgatcctgacatgcttgaggtgggaaatggaggaatgacaaaggatgaatatgtagtccattttagcatatgggccatatctaaggctccccttcttattggttgtgatgtgaggaatatgacaaaagagactatggagatcatcgcaaataaagaggttatctctgtcaaccaagatccaattggtgtccaagctaaaaaggttagaatggaaggggatcttgaggtttgggctgggcccctttcaggctacagagttgccttactccttgtcaaccgaggcccgtggcgaacatccattacagcccactgggaagacattggtatccccccaaacagtgtagttgaagcaagagatctttgggagcacaagacactgaagaaacgatttgttggaaacttgacagccaccatggactcccatgcatgcaaactgtatgtgctgaagccaatctcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0009505 GO:0030312 GO:0044464 GO:0048046 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00052 ko00561 ko00600 ko00603 map00052 map00561 map00600 map00603

Pfam Domains

Protein Families

Melibiase_2 Melibiase_2_C

Protein Analysis

261

Amino Acids

29.35

Weight (kDa)

5.72

Isoelectric Point (pI)

19.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003741)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08380 AT5G08380
fragaria_vesca	FvH4_2g12370 FvH4_2g12370 FvH4_2g12370 FvH4_4g37361
malus_domestica	MD13G1000400.v1.1 MD16G1012600.v1.1
prunus_persica	Prupe.1G352200_v2.0.a1 Prupe.1G352200_v2.0.a1
pyrus_communis	pycom13g00040 pycom16g01180 pycom2749g00030
rosa_chinensis	RchiOBHm_Chr4g0447241 RchiOBHm_Chr6g0272391
rosa_laevigata	RLG00000005594 RLG00000013676
rosa_multiflora	Rmu_co8492007.1_g000001 Rmu_sc0018949.1_g000001 Rmu_sc0018950.1_g000001
rosa_roxburghii	Rroxscaffold_5G00387600 Rroxscaffold_7G00196300
rosa_rugosa	Rorug04G0379000 Rorug06G0069000
rosa_samantha	Rh4AG440500 Rh4BG449500 Rh4CG466600 Rh4DG448000 Rh6AG184900 Rh6BG188200 Rh6CG186100 Rh6DG177900
rosa_wichuraiana	Rw4G037690 Rw6G015990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	323, 497, 552
AcsI	RAATTY	1 cut(s)	39
AcuI	CTGAAG	1 cut(s)	725
AfiI	CCNNNNNNNGG	1 cut(s)	572
AgsI	TTSAA	2 cut(s)	70, 674
AjnI	CCWGG	2 cut(s)	4, 313
AluBI	AGCT	2 cut(s)	225, 521
AluI	AGCT	2 cut(s)	225, 521
Alw21I	GWGCWC	2 cut(s)	136, 696
Alw26I	GTCTC	2 cut(s)	274, 449
AlwI	GGATC	3 cut(s)	323, 497, 552
Ama87I	CYCGRG	1 cut(s)	129
AoxI	GGCC	3 cut(s)	399, 563, 607
ApaI	GGGCCC	1 cut(s)	567
ApeKI	GCWGC	1 cut(s)	47
ApoI	RAATTY	1 cut(s)	39
AspS9I	GGNCC	4 cut(s)	399, 563, 564, 608
AvaI	CYCGRG	1 cut(s)	129
BaeGI	GKGCMC	1 cut(s)	567
BaeI	ACNNNNGTAYC	2 cut(s)	634, 667
BanII	GRGCYC	1 cut(s)	567
BauI	CACGAG	1 cut(s)	20
BbsI	GAAGAC	1 cut(s)	648
Bbv12I	GWGCWC	2 cut(s)	136, 696
BbvI	GCAGC	1 cut(s)	34
BccI	CCATC	1 cut(s)	86
BciT130I	CCWGG	2 cut(s)	6, 315
BciVI	GTATCC	1 cut(s)	662
BcoDI	GTCTC	2 cut(s)	274, 449
BfmI	CTRYAG	1 cut(s)	577
BfuI	GTATCC	1 cut(s)	662
BglII	AGATCT	1 cut(s)	682
BisI	GCNGC	1 cut(s)	48
BlsI	GCNGC	1 cut(s)	49
Bme1390I	CCNGG	2 cut(s)	6, 315
BmeT110I	CYCGRG	1 cut(s)	129
BmgT120I	GGNCC	4 cut(s)	399, 563, 564, 608
BmiI	GGNNCC	4 cut(s)	97, 414, 565, 566
BmrFI	CCNGG	2 cut(s)	6, 315
BmrI	ACTGGG	1 cut(s)	646
BmsI	GCATC	2 cut(s)	22, 199
BmuI	ACTGGG	1 cut(s)	646
BpiI	GAAGAC	1 cut(s)	648
BplI	GAGNNNNNCTC	2 cut(s)	473, 505
BpmI	CTGGAG	2 cut(s)	247, 256
BpuEI	CTTGAG	2 cut(s)	362, 569
BsaBI	GATNNNNATC	1 cut(s)	189
BsaI	GGTCTC	1 cut(s)	274
BsaJI	CCNNGG	3 cut(s)	604, 611, 738
Bsc4I	CCNNNNNNNGG	1 cut(s)	572
Bse1I	ACTGG	1 cut(s)	641
Bse8I	GATNNNNATC	1 cut(s)	189
BseBI	CCWGG	2 cut(s)	6, 315
BseDI	CCNNGG	3 cut(s)	604, 611, 738
BseGI	GGATG	3 cut(s)	190, 376, 620
BseJI	GATNNNNATC	1 cut(s)	189
BseLI	CCNNNNNNNGG	1 cut(s)	572
BseNI	ACTGG	1 cut(s)	641
BseSI	GKGCMC	1 cut(s)	567
BseXI	GCAGC	1 cut(s)	34
BseYI	CCCAGC	1 cut(s)	560
BshFI	GGCC	3 cut(s)	401, 565, 609
BsiHKAI	GWGCWC	2 cut(s)	136, 696
BsiHKCI	CYCGRG	1 cut(s)	129
BslFI	GGGAC	1 cut(s)	138
BslI	CCNNNNNNNGG	1 cut(s)	572
BsmAI	GTCTC	2 cut(s)	274, 449
BsmFI	GGGAC	1 cut(s)	138
BsnI	GGCC	3 cut(s)	401, 565, 609
Bso31I	GGTCTC	1 cut(s)	274
BsoBI	CYCGRG	1 cut(s)	129
Bsp120I	GGGCCC	1 cut(s)	563
Bsp1286I	GDGCHC	3 cut(s)	136, 567, 696
Bsp143I	GATC	5 cut(s)	328, 465, 502, 544, 682
Bsp19I	CCATGG	1 cut(s)	738
BspANI	GGCC	3 cut(s)	401, 565, 609
BspHI	TCATGA	1 cut(s)	123
BspLI	GGNNCC	4 cut(s)	97, 414, 565, 566
BspPI	GGATC	3 cut(s)	323, 497, 552
BspTNI	GGTCTC	1 cut(s)	274
BsrI	ACTGG	1 cut(s)	641
BssECI	CCNNGG	3 cut(s)	604, 611, 738
BssMI	GATC	5 cut(s)	328, 465, 502, 544, 682
BssSI	CACGAG	1 cut(s)	20
BssT1I	CCWWGG	1 cut(s)	738
Bst2BI	CACGAG	1 cut(s)	20
Bst2UI	CCWGG	2 cut(s)	6, 315
Bst4CI	ACNGT	5 cut(s)	83, 109, 152, 665, 762
BstC8I	GCNNGC	1 cut(s)	754
BstDEI	CTNAG	2 cut(s)	408, 783
BstDSI	CCRYGG	2 cut(s)	611, 738
BstF5I	GGATG	3 cut(s)	190, 376, 620
BstKTI	GATC	5 cut(s)	331, 468, 505, 547, 685
BstMAI	GTCTC	2 cut(s)	274, 449
BstMBI	GATC	5 cut(s)	328, 465, 502, 544, 682
BstMWI	GCNNNNNNNGC	1 cut(s)	305
BstNI	CCWGG	2 cut(s)	6, 315
BstNSI	RCATGY	2 cut(s)	340, 756
BstSCI	CCNGG	2 cut(s)	4, 313
BstSFI	CTRYAG	1 cut(s)	577
BstSLI	GKGCMC	1 cut(s)	567
BstV1I	GCAGC	1 cut(s)	34
BstV2I	GAAGAC	1 cut(s)	648
BstX2I	RGATCY	3 cut(s)	502, 544, 682
BstYI	RGATCY	3 cut(s)	502, 544, 682
BsuI	GTATCC	1 cut(s)	662
BsuRI	GGCC	3 cut(s)	401, 565, 609
BtgI	CCRYGG	2 cut(s)	611, 738
BtgZI	GCGATG	1 cut(s)	454
BtsCI	GGATG	3 cut(s)	190, 376, 620
BtsIMutI	CAGTG	4 cut(s)	134, 634, 670, 701
Cac8I	GCNNGC	1 cut(s)	754
CciI	TCATGA	1 cut(s)	123
Cfr13I	GGNCC	4 cut(s)	399, 563, 564, 608
CsiI	ACCWGGT	1 cut(s)	313
CviAII	CATG	8 cut(s)	51, 124, 255, 283, 337, 739, 749, 753
DdeI	CTNAG	2 cut(s)	408, 783
DpnI	GATC	5 cut(s)	330, 467, 504, 546, 684
DpnII	GATC	5 cut(s)	328, 465, 502, 544, 682
Eco130I	CCWWGG	1 cut(s)	738
Eco24I	GRGCYC	1 cut(s)	567
Eco31I	GGTCTC	1 cut(s)	274
Eco32I	GATATC	1 cut(s)	116
Eco57I	CTGAAG	1 cut(s)	725
Eco88I	CYCGRG	1 cut(s)	129
EcoO109I	RGGNCCY	1 cut(s)	564
EcoRII	CCWGG	2 cut(s)	4, 313
EcoRV	GATATC	1 cut(s)	116
EcoT14I	CCWWGG	1 cut(s)	738
EcoT22I	ATGCAT	1 cut(s)	754
EcoT38I	GRGCYC	1 cut(s)	567
ErhI	CCWWGG	1 cut(s)	738
FaeI	CATG	8 cut(s)	54, 127, 258, 286, 340, 742, 752, 756
FalI	AAGNNNNNCTT	2 cut(s)	531, 563
FaqI	GGGAC	1 cut(s)	138
FatI	CATG	8 cut(s)	50, 123, 254, 282, 336, 738, 748, 752
FauNDI	CATATG	1 cut(s)	395
Fnu4HI	GCNGC	1 cut(s)	48
FokI	GGATG	3 cut(s)	177, 383, 607
FriOI	GRGCYC	1 cut(s)	567
Fsp4HI	GCNGC	1 cut(s)	48
GluI	GCNGC	1 cut(s)	48
GsaI	CCCAGC	1 cut(s)	564
GsuI	CTGGAG	2 cut(s)	247, 256
HaeIII	GGCC	3 cut(s)	401, 565, 609
Hin1II	CATG	8 cut(s)	54, 127, 258, 286, 340, 742, 752, 756
HincII	GTYRAC	2 cut(s)	496, 601
HindII	GTYRAC	2 cut(s)	496, 601
HinfI	GANTC	1 cut(s)	743
Hpy166II	GTNNAC	3 cut(s)	11, 496, 601
Hpy188I	TCNGA	2 cut(s)	218, 250
Hpy188III	TCNNGA	5 cut(s)	20, 124, 273, 332, 548
Hpy8I	GTNNAC	3 cut(s)	11, 496, 601
HpyAV	CCTTC	2 cut(s)	428, 533
HpyCH4III	ACNGT	5 cut(s)	83, 109, 152, 665, 762
HpyCH4V	TGCA	4 cut(s)	50, 190, 752, 756
HpyF10VI	GCNNNNNNNGC	1 cut(s)	305
HpyF3I	CTNAG	2 cut(s)	408, 783
Hsp92II	CATG	8 cut(s)	54, 127, 258, 286, 340, 742, 752, 756
Kzo9I	GATC	5 cut(s)	328, 465, 502, 544, 682
LmnI	GCTCC	3 cut(s)	101, 418, 691
Lsp1109I	GCAGC	1 cut(s)	34
LweI	GCATC	2 cut(s)	22, 199
MabI	ACCWGGT	1 cut(s)	313
MaeIII	GTNAC	1 cut(s)	17
MalI	GATC	5 cut(s)	330, 467, 504, 546, 684
MboI	GATC	5 cut(s)	328, 465, 502, 544, 682
MboII	GAAGA	2 cut(s)	653, 718
MfeI	CAATTG	1 cut(s)	507
MflI	RGATCY	3 cut(s)	502, 544, 682
MhlI	GDGCHC	3 cut(s)	136, 567, 696
MluCI	AATT	2 cut(s)	39, 507
MlyI	GAGTC	1 cut(s)	737
MmeI	TCCRAC	3 cut(s)	196, 302, 700
MnlI	CCTC	7 cut(s)	16, 337, 350, 432, 475, 544, 599
Mph1103I	ATGCAT	1 cut(s)	754
MspA1I	CMGCKG	1 cut(s)	225
MspR9I	CCNGG	2 cut(s)	6, 315
MunI	CAATTG	1 cut(s)	507
MvaI	CCWGG	2 cut(s)	6, 315
MwoI	GCNNNNNNNGC	1 cut(s)	305
NcoI	CCATGG	1 cut(s)	738
NdeI	CATATG	1 cut(s)	395
NdeII	GATC	5 cut(s)	328, 465, 502, 544, 682
NlaIII	CATG	8 cut(s)	54, 127, 258, 286, 340, 742, 752, 756
NlaIV	GGNNCC	4 cut(s)	97, 414, 565, 566
NmuCI	GTSAC	1 cut(s)	17
NsiI	ATGCAT	1 cut(s)	754
NspI	RCATGY	2 cut(s)	340, 756
PaeI	GCATGC	1 cut(s)	756
PagI	TCATGA	1 cut(s)	123
PkrI	GCNGC	1 cut(s)	49
PleI	GAGTC	1 cut(s)	737
PpsI	GAGTC	1 cut(s)	737
Psp6I	CCWGG	2 cut(s)	4, 313
PspFI	CCCAGC	1 cut(s)	560
PspGI	CCWGG	2 cut(s)	4, 313
PspN4I	GGNNCC	4 cut(s)	97, 414, 565, 566
PspOMI	GGGCCC	1 cut(s)	563
PspPI	GGNCC	4 cut(s)	399, 563, 564, 608
PsrI	GAACNNNNNNTAC	2 cut(s)	610, 642
PsuI	RGATCY	3 cut(s)	502, 544, 682
PvuII	CAGCTG	1 cut(s)	225
SatI	GCNGC	1 cut(s)	48
Sau3AI	GATC	5 cut(s)	328, 465, 502, 544, 682
Sau96I	GGNCC	4 cut(s)	399, 563, 564, 608
SchI	GAGTC	1 cut(s)	737
ScrFI	CCNGG	2 cut(s)	6, 315
SduI	GDGCHC	3 cut(s)	136, 567, 696
SetI	ASST	7 cut(s)	227, 316, 348, 486, 523, 531, 555
SexAI	ACCWGGT	1 cut(s)	313
SfaNI	GCATC	2 cut(s)	22, 199
SfcI	CTRYAG	1 cut(s)	577
SmlI	CTYRAG	2 cut(s)	341, 548
SmoI	CTYRAG	2 cut(s)	341, 548
SphI	GCATGC	1 cut(s)	756
Sse9I	AATT	2 cut(s)	39, 507
StyD4I	CCNGG	2 cut(s)	4, 313
StyI	CCWWGG	1 cut(s)	738
TaaI	ACNGT	5 cut(s)	83, 109, 152, 665, 762
TasI	AATT	2 cut(s)	39, 507
TscAI	CASTG	4 cut(s)	141, 641, 670, 708
TseFI	GTSAC	1 cut(s)	17
TseI	GCWGC	1 cut(s)	47
Tsp45I	GTSAC	1 cut(s)	17
TspDTI	ATGAA	4 cut(s)	155, 299, 303, 387
TspRI	CASTG	4 cut(s)	141, 641, 670, 708
XapI	RAATTY	1 cut(s)	39
XceI	RCATGY	2 cut(s)	340, 756
XcmI	CCANNNNNNNNNTGG	1 cut(s)	506
Zsp2I	ATGCAT	1 cut(s)	754

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.