Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0003741

Physical Location & Seq

Genomic Coordinates Forward (+)

39050722 .. 39054185

Gene Structure 3464 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00196300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1233 bp

ATGATGAGGAAAAACGTCGGTGGCAGTGCAGTACTGCCAACAACAATGATTGTAATGGCAGTGATGCTATGCTCACTCAAGTTAATGGGTGTTTCTGCTTCGCAACTCAGACGAAATCTGCTTGCCAATGGCCTTGGAGTGACTCCTCCAATGGGGTGGAATAGTTGGAATCACTTCAACTGCAAAATTGAGGAGAAAACCATCAAAGAAACTGCTGATGCTCTGGTATCCACTGGTCTCTCTAAACTTGGATATAACTACGTTAACATAGATGATTGCTGGGCAGAAAAAGCTCGCGATGTAAAGGGTAATCTAGTGGCCAAGAAATCGGCATTTCCATCAGGCATTAAAGCTCTGGCGGATTATGTCCACAGCAAGGGTCTTAAGCTAGGAATCTACTCGGATGCAGGGTACTTTACTTGCAGCAAAACTATGCCTGGTTCACTTGGTCATGAAGAACAAGATGCCAATACCTTTGCTGCTTGGGTACCATATATTCTAGGCATCGATTATTTGAAATATGATAACTGTTATAATGATGGCTCAAACCCAACTGTTAGATACCCTGTAATGACCCGAGCTCTAATGAAAGCAGGCCGTCCCATATTCTTCTCTCTCTGCGAATGGGGAGATATGCACCCTGCTTTATGGGGTGCCAAGTTAGGAAATAGCTGGAGAACTACAAAGGACATTTCTGATACATGGGAAAGTATGGTCTCCAGAGCAGACATGAATGAATTTTATGCTGAATATGCCAGGCCTGGTGGTTGGAATGATCCTGACATGCTTGAAGTGGGAAATGGAGGAATGACGAAAGATGAATATGTAGTTCATTTTAGCATATGGGCAATCTCAAAGGCTCCTCTTCTTCTTGGTTGTGATGTAAGGAATATGACAAAAGAGACTCTGGGGATCGTTGCAAATAAAGAGGTCATCTCTGTCAACCAGGATCCACTTGGTGTCCAAGCCAAAAAAGTTAGACTGGAAGGAGATCTTGAGATCTGGGCTGGGCCACTTTCAGGGTACAGAGTATCTTTACTCCTAATTAACCAAGGCCCTTGGAACAATTCCATTACAGCTCAATGGGAAGACATAGGCATCCCCCCAAATACTGTTGTTGAAGCAAGAGACCTTTGGGAGCATAAGACACTCAAGACTCGATTCGTTGGAAACTTGACAGCCACCATGAACTCTCATGCATGTAAAATGTATGTGTTGAAGCCAGTCTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0009505 GO:0030312 GO:0044464 GO:0048046 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00052 ko00561 ko00600 ko00603 map00052 map00561 map00600 map00603

Pfam Domains

Protein Families

Melibiase_2 Melibiase_2_C

Protein Analysis

410

Amino Acids

45.41

Weight (kDa)

8.0

Isoelectric Point (pI)

25.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Melibiase_2	PF16499	48 - 317	3.8e-73	Alpha galactosidase A
Melibiase_C	PF17801	329 - 406	2.1e-16	Alpha galactosidase C-terminal beta sandwich domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003741)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08380 AT5G08380
fragaria_vesca	FvH4_2g12370 FvH4_2g12370 FvH4_2g12370 FvH4_4g37361
malus_domestica	MD13G1000400.v1.1 MD16G1012600.v1.1
prunus_persica	Prupe.1G352200_v2.0.a1 Prupe.1G352200_v2.0.a1
pyrus_communis	pycom13g00040 pycom16g01180 pycom2749g00030
rosa_chinensis	RchiOBHm_Chr4g0447241 RchiOBHm_Chr6g0272391
rosa_laevigata	RLG00000005594 RLG00000013676
rosa_multiflora	Rmu_co8492007.1_g000001 Rmu_sc0018949.1_g000001 Rmu_sc0018950.1_g000001
rosa_roxburghii	Rroxscaffold_5G00387600 Rroxscaffold_7G00196300
rosa_rugosa	Rorug04G0379000 Rorug06G0069000
rosa_samantha	Rh4AG440500 Rh4BG449500 Rh4CG466600 Rh4DG448000 Rh6AG184900 Rh6BG188200 Rh6CG186100 Rh6DG177900
rosa_wichuraiana	Rw4G037690 Rw6G015990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	534
Acc65I	GGTACC	1 cut(s)	487
AccB1I	GGYRCC	2 cut(s)	487, 653
AccII	CGCG	1 cut(s)	297
AciI	CCGC	1 cut(s)	359
AclWI	GGATC	4 cut(s)	770, 920, 944, 957
AcoI	YGGCCR	1 cut(s)	318
AcsI	RAATTY	1 cut(s)	737
AdeI	CACNNNGTG	1 cut(s)	959
AfaI	GTAC	4 cut(s)	33, 413, 489, 1025
AfiI	CCNNNNNNNGG	3 cut(s)	152, 376, 1019
AflII	CTTAAG	1 cut(s)	383
AgsI	TTSAA	5 cut(s)	178, 517, 791, 1121, 1219
AjnI	CCWGG	4 cut(s)	436, 755, 760, 945
AluBI	AGCT	6 cut(s)	293, 353, 388, 581, 672, 1079
AluI	AGCT	6 cut(s)	293, 353, 388, 581, 672, 1079
Alw21I	GWGCWC	1 cut(s)	583
Alw26I	GTCTC	4 cut(s)	242, 721, 896, 1122
AlwI	GGATC	4 cut(s)	770, 920, 944, 957
Ama87I	CYCGRG	1 cut(s)	576
AoxI	GGCC	6 cut(s)	130, 318, 595, 758, 1010, 1054
ApeKI	GCWGC	2 cut(s)	423, 479
ApoI	RAATTY	1 cut(s)	737
Asp700I	GAANNNNTTC	1 cut(s)	173
Asp718I	GGTACC	1 cut(s)	487
AspS9I	GGNCC	2 cut(s)	1010, 1055
AvaI	CYCGRG	1 cut(s)	576
BalI	TGGCCA	1 cut(s)	320
BamHI	GGATCC	1 cut(s)	949
BanI	GGYRCC	2 cut(s)	487, 653
BanII	GRGCYC	1 cut(s)	583
BbsI	GAAGAC	1 cut(s)	1095
Bbv12I	GWGCWC	1 cut(s)	583
BbvI	GCAGC	2 cut(s)	435, 466
BccI	CCATC	3 cut(s)	209, 346, 533
BceAI	ACGGC	1 cut(s)	582
BciT130I	CCWGG	4 cut(s)	438, 757, 762, 947
BciVI	GTATCC	1 cut(s)	238
BcoDI	GTCTC	4 cut(s)	242, 721, 896, 1122
BfaI	CTAG	3 cut(s)	314, 389, 500
BfrI	CTTAAG	1 cut(s)	383
BfuI	GTATCC	1 cut(s)	238
BglII	AGATCT	2 cut(s)	991, 999
BisI	GCNGC	2 cut(s)	424, 480
BlsI	GCNGC	2 cut(s)	425, 481
BmcAI	AGTACT	1 cut(s)	33
Bme1390I	CCNGG	4 cut(s)	438, 757, 762, 947
BmeT110I	CYCGRG	1 cut(s)	576
BmgT120I	GGNCC	2 cut(s)	1010, 1055
BmiI	GGNNCC	4 cut(s)	489, 655, 861, 951
BmrFI	CCNGG	4 cut(s)	438, 757, 762, 947
BmsI	GCATC	6 cut(s)	54, 208, 394, 454, 513, 1107
BpiI	GAAGAC	1 cut(s)	1095
BplI	GAGNNNNNCTC	2 cut(s)	920, 952
BpmI	CTGGAG	2 cut(s)	694, 703
BpuEI	CTTGAG	3 cut(s)	62, 1016, 1136
Bsa29I	ATCGAT	1 cut(s)	507
BsaI	GGTCTC	3 cut(s)	242, 721, 1122
BsaJI	CCNNGG	3 cut(s)	133, 1051, 1058
Bsc4I	CCNNNNNNNGG	3 cut(s)	152, 376, 1019
Bse1I	ACTGG	3 cut(s)	238, 987, 1223
BseBI	CCWGG	4 cut(s)	438, 757, 762, 947
BseCI	ATCGAT	1 cut(s)	507
BseDI	CCNNGG	3 cut(s)	133, 1051, 1058
BseGI	GGATG	2 cut(s)	409, 1098
BseLI	CCNNNNNNNGG	3 cut(s)	152, 376, 1019
BseMII	CTCAG	1 cut(s)	121
BseNI	ACTGG	3 cut(s)	238, 987, 1223
BseRI	GAGGAG	3 cut(s)	135, 206, 852
BseXI	GCAGC	2 cut(s)	435, 466
BseYI	CCCAGC	2 cut(s)	279, 1007
BsgI	GTGCAG	1 cut(s)	48
Bsh1236I	CGCG	1 cut(s)	297
BshFI	GGCC	6 cut(s)	132, 320, 597, 760, 1012, 1056
BshNI	GGYRCC	2 cut(s)	487, 653
BshVI	ATCGAT	1 cut(s)	507
BsiHKAI	GWGCWC	1 cut(s)	583
BsiHKCI	CYCGRG	1 cut(s)	576
BslFI	GGGAC	1 cut(s)	585
BslI	CCNNNNNNNGG	3 cut(s)	152, 376, 1019
BsmAI	GTCTC	4 cut(s)	242, 721, 896, 1122
BsmFI	GGGAC	1 cut(s)	585
BsnI	GGCC	6 cut(s)	132, 320, 597, 760, 1012, 1056
Bso31I	GGTCTC	3 cut(s)	242, 721, 1122
BsoBI	CYCGRG	1 cut(s)	576
Bsp1286I	GDGCHC	1 cut(s)	583
Bsp143I	GATC	5 cut(s)	775, 912, 949, 991, 999
Bsp68I	TCGCGA	1 cut(s)	297
BspACI	CCGC	1 cut(s)	359
BspANI	GGCC	6 cut(s)	132, 320, 597, 760, 1012, 1056
BspCNI	CTCAG	1 cut(s)	120
BspDI	ATCGAT	1 cut(s)	507
BspFNI	CGCG	1 cut(s)	297
BspHI	TCATGA	1 cut(s)	451
BspLI	GGNNCC	4 cut(s)	489, 655, 861, 951
BspPI	GGATC	4 cut(s)	770, 920, 944, 957
BspT107I	GGYRCC	2 cut(s)	487, 653
BspTI	CTTAAG	1 cut(s)	383
BspTNI	GGTCTC	3 cut(s)	242, 721, 1122
BsrI	ACTGG	3 cut(s)	238, 987, 1223
BssECI	CCNNGG	3 cut(s)	133, 1051, 1058
BssMI	GATC	5 cut(s)	775, 912, 949, 991, 999
BssT1I	CCWWGG	3 cut(s)	133, 1051, 1058
Bst2UI	CCWGG	4 cut(s)	438, 757, 762, 947
Bst4CI	ACNGT	3 cut(s)	530, 556, 1114
Bst6I	CTCTTC	1 cut(s)	870
BstAFI	CTTAAG	1 cut(s)	383
BstC8I	GCNNGC	3 cut(s)	123, 295, 595
BstDEI	CTNAG	1 cut(s)	107
BstF5I	GGATG	2 cut(s)	409, 1098
BstFNI	CGCG	1 cut(s)	297
BstKTI	GATC	5 cut(s)	778, 915, 952, 994, 1002
BstMAI	GTCTC	4 cut(s)	242, 721, 896, 1122
BstMBI	GATC	5 cut(s)	775, 912, 949, 991, 999
BstMWI	GCNNNNNNNGC	2 cut(s)	290, 752
BstNI	CCWGG	4 cut(s)	438, 757, 762, 947
BstNSI	RCATGY	2 cut(s)	787, 1203
BstSCI	CCNGG	4 cut(s)	436, 755, 760, 945
BstUI	CGCG	1 cut(s)	297
BstV1I	GCAGC	2 cut(s)	435, 466
BstV2I	GAAGAC	1 cut(s)	1095
BstX2I	RGATCY	3 cut(s)	949, 991, 999
BstXI	CCANNNNNNTGG	1 cut(s)	156
BstYI	RGATCY	3 cut(s)	949, 991, 999
Bsu15I	ATCGAT	1 cut(s)	507
BsuI	GTATCC	1 cut(s)	238
BsuRI	GGCC	6 cut(s)	132, 320, 597, 760, 1012, 1056
BsuTUI	ATCGAT	1 cut(s)	507
BtgZI	GCGATG	1 cut(s)	312
BtsCI	GGATG	2 cut(s)	409, 1098
BtsI	GCAGTG	2 cut(s)	31, 66
BtsIMutI	CAGTG	3 cut(s)	31, 66, 231
BtuMI	TCGCGA	1 cut(s)	297
Cac8I	GCNNGC	3 cut(s)	123, 295, 595
CciI	TCATGA	1 cut(s)	451
Cfr13I	GGNCC	2 cut(s)	1010, 1055
ClaI	ATCGAT	1 cut(s)	507
Csp6I	GTAC	4 cut(s)	32, 412, 488, 1024
CviAII	CATG	7 cut(s)	452, 702, 730, 784, 1186, 1196, 1200
CviQI	GTAC	4 cut(s)	32, 412, 488, 1024
DdeI	CTNAG	1 cut(s)	107
DpnI	GATC	5 cut(s)	777, 914, 951, 993, 1001
DpnII	GATC	5 cut(s)	775, 912, 949, 991, 999
DraIII	CACNNNGTG	1 cut(s)	959
EaeI	YGGCCR	1 cut(s)	318
Eam1104I	CTCTTC	1 cut(s)	870
EarI	CTCTTC	1 cut(s)	870
EciI	GGCGGA	1 cut(s)	374
Ecl136II	GAGCTC	1 cut(s)	581
Eco130I	CCWWGG	3 cut(s)	133, 1051, 1058
Eco147I	AGGCCT	1 cut(s)	760
Eco24I	GRGCYC	1 cut(s)	583
Eco31I	GGTCTC	3 cut(s)	242, 721, 1122
Eco53kI	GAGCTC	1 cut(s)	581
Eco88I	CYCGRG	1 cut(s)	576
EcoICRI	GAGCTC	1 cut(s)	581
EcoO109I	RGGNCCY	1 cut(s)	1055
EcoRII	CCWGG	4 cut(s)	436, 755, 760, 945
EcoT14I	CCWWGG	3 cut(s)	133, 1051, 1058
EcoT22I	ATGCAT	1 cut(s)	1201
EcoT38I	GRGCYC	1 cut(s)	583
ErhI	CCWWGG	3 cut(s)	133, 1051, 1058
FaeI	CATG	7 cut(s)	455, 705, 733, 787, 1189, 1199, 1203
FalI	AAGNNNNNCTT	2 cut(s)	978, 1010
FaqI	GGGAC	1 cut(s)	585
FatI	CATG	7 cut(s)	451, 701, 729, 783, 1185, 1195, 1199
FauNDI	CATATG	1 cut(s)	842
Fnu4HI	GCNGC	2 cut(s)	424, 480
FokI	GGATG	2 cut(s)	416, 1085
FriOI	GRGCYC	1 cut(s)	583
Fsp4HI	GCNGC	2 cut(s)	424, 480
FspBI	CTAG	3 cut(s)	314, 389, 500
GluI	GCNGC	2 cut(s)	424, 480
GsaI	CCCAGC	2 cut(s)	283, 1011
GsuI	CTGGAG	2 cut(s)	694, 703
HaeIII	GGCC	6 cut(s)	132, 320, 597, 760, 1012, 1056
Hin1II	CATG	7 cut(s)	455, 705, 733, 787, 1189, 1199, 1203
HincII	GTYRAC	2 cut(s)	265, 943
HindII	GTYRAC	2 cut(s)	265, 943
HinfI	GANTC	6 cut(s)	142, 169, 393, 904, 1156, 1161
HpaI	GTTAAC	1 cut(s)	265
Hpy166II	GTNNAC	4 cut(s)	265, 370, 443, 943
Hpy188I	TCNGA	3 cut(s)	110, 403, 697
Hpy188III	TCNNGA	7 cut(s)	296, 452, 720, 779, 995, 1153, 1230
Hpy8I	GTNNAC	4 cut(s)	265, 370, 443, 943
Hpy99I	CGWCG	1 cut(s)	20
HpyAV	CCTTC	1 cut(s)	980
HpyCH4III	ACNGT	3 cut(s)	530, 556, 1114
HpyCH4IV	ACGT	2 cut(s)	15, 261
HpyCH4V	TGCA	7 cut(s)	29, 183, 407, 423, 637, 920, 1199
HpyF10VI	GCNNNNNNNGC	2 cut(s)	290, 752
HpyF3I	CTNAG	1 cut(s)	107
HpySE526I	ACGT	2 cut(s)	15, 261
Hsp92II	CATG	7 cut(s)	455, 705, 733, 787, 1189, 1199, 1203
KpnI	GGTACC	1 cut(s)	491
KspAI	GTTAAC	1 cut(s)	265
Kzo9I	GATC	5 cut(s)	775, 912, 949, 991, 999
LmnI	GCTCC	2 cut(s)	865, 1138
Lsp1109I	GCAGC	2 cut(s)	435, 466
LweI	GCATC	6 cut(s)	54, 208, 394, 454, 513, 1107
MaeI	CTAG	3 cut(s)	314, 389, 500
MaeII	ACGT	2 cut(s)	15, 261
MaeIII	GTNAC	1 cut(s)	139
MalI	GATC	5 cut(s)	777, 914, 951, 993, 1001
MboI	GATC	5 cut(s)	775, 912, 949, 991, 999
MboII	GAAGA	5 cut(s)	467, 601, 857, 860, 1100
MflI	RGATCY	3 cut(s)	949, 991, 999
MhlI	GDGCHC	1 cut(s)	583
MlsI	TGGCCA	1 cut(s)	320
MluCI	AATT	4 cut(s)	186, 737, 1044, 1066
MluNI	TGGCCA	1 cut(s)	320
MlyI	GAGTC	3 cut(s)	136, 898, 1150
MmeI	TCCRAC	3 cut(s)	146, 749, 1147
MnlI	CCTC	5 cut(s)	156, 184, 797, 873, 922
Mox20I	TGGCCA	1 cut(s)	320
Mph1103I	ATGCAT	1 cut(s)	1201
MroXI	GAANNNNTTC	1 cut(s)	173
MscI	TGGCCA	1 cut(s)	320
MseI	TTAA	5 cut(s)	83, 264, 348, 384, 1047
Msp20I	TGGCCA	1 cut(s)	320
MspCI	CTTAAG	1 cut(s)	383
MspR9I	CCNGG	4 cut(s)	438, 757, 762, 947
MvaI	CCWGG	4 cut(s)	438, 757, 762, 947
MvnI	CGCG	1 cut(s)	297
MwoI	GCNNNNNNNGC	2 cut(s)	290, 752
NdeI	CATATG	1 cut(s)	842
NdeII	GATC	5 cut(s)	775, 912, 949, 991, 999
NlaIII	CATG	7 cut(s)	455, 705, 733, 787, 1189, 1199, 1203
NlaIV	GGNNCC	4 cut(s)	489, 655, 861, 951
NmuCI	GTSAC	1 cut(s)	139
NruI	TCGCGA	1 cut(s)	297
NsiI	ATGCAT	1 cut(s)	1201
NspI	RCATGY	2 cut(s)	787, 1203
PagI	TCATGA	1 cut(s)	451
PceI	AGGCCT	1 cut(s)	760
PdmI	GAANNNNTTC	1 cut(s)	173
PfeI	GAWTC	3 cut(s)	169, 393, 1161
PkrI	GCNGC	2 cut(s)	425, 481
PleI	GAGTC	3 cut(s)	136, 898, 1150
PpsI	GAGTC	3 cut(s)	136, 898, 1150
PsiI	TTATAA	1 cut(s)	534
Psp124BI	GAGCTC	1 cut(s)	583
Psp6I	CCWGG	4 cut(s)	436, 755, 760, 945
PspFI	CCCAGC	2 cut(s)	279, 1007
PspGI	CCWGG	4 cut(s)	436, 755, 760, 945
PspN4I	GGNNCC	4 cut(s)	489, 655, 861, 951
PspPI	GGNCC	2 cut(s)	1010, 1055
PsuI	RGATCY	3 cut(s)	949, 991, 999
RruI	TCGCGA	1 cut(s)	297
RsaI	GTAC	4 cut(s)	33, 413, 489, 1025
RsaNI	GTAC	4 cut(s)	32, 412, 488, 1024
SacI	GAGCTC	1 cut(s)	583
SaqAI	TTAA	5 cut(s)	83, 264, 348, 384, 1047
SatI	GCNGC	2 cut(s)	424, 480
Sau3AI	GATC	5 cut(s)	775, 912, 949, 991, 999
Sau96I	GGNCC	2 cut(s)	1010, 1055
ScaI	AGTACT	1 cut(s)	33
SchI	GAGTC	3 cut(s)	136, 898, 1150
ScrFI	CCNGG	4 cut(s)	438, 757, 762, 947
SduI	GDGCHC	1 cut(s)	583
SfaNI	GCATC	6 cut(s)	54, 208, 394, 454, 513, 1107
SmlI	CTYRAG	4 cut(s)	77, 383, 995, 1151
SmoI	CTYRAG	4 cut(s)	77, 383, 995, 1151
Sse9I	AATT	4 cut(s)	186, 737, 1044, 1066
SseBI	AGGCCT	1 cut(s)	760
SsiI	CCGC	1 cut(s)	359
SspMI	CTAG	3 cut(s)	314, 389, 500
SstI	GAGCTC	1 cut(s)	583
StuI	AGGCCT	1 cut(s)	760
StyD4I	CCNGG	4 cut(s)	436, 755, 760, 945
StyI	CCWWGG	3 cut(s)	133, 1051, 1058
TaaI	ACNGT	3 cut(s)	530, 556, 1114
TaiI	ACGT	2 cut(s)	18, 264
TaqI	TCGA	2 cut(s)	507, 1159
TasI	AATT	4 cut(s)	186, 737, 1044, 1066
TatI	WGTACW	1 cut(s)	31
TfiI	GAWTC	3 cut(s)	169, 393, 1161
Tru1I	TTAA	5 cut(s)	83, 264, 348, 384, 1047
Tru9I	TTAA	5 cut(s)	83, 264, 348, 384, 1047
TscAI	CASTG	3 cut(s)	31, 66, 238
TseFI	GTSAC	1 cut(s)	139
TseI	GCWGC	2 cut(s)	423, 479
Tsp45I	GTSAC	1 cut(s)	139
TspDTI	ATGAA	7 cut(s)	468, 602, 746, 750, 821, 834, 1202
TspRI	CASTG	3 cut(s)	31, 66, 238
Vha464I	CTTAAG	1 cut(s)	383
XapI	RAATTY	1 cut(s)	737
XceI	RCATGY	2 cut(s)	787, 1203
XcmI	CCANNNNNNNNNTGG	1 cut(s)	953
XmnI	GAANNNNTTC	1 cut(s)	173
XspI	CTAG	3 cut(s)	314, 389, 500
ZrmI	AGTACT	1 cut(s)	33
Zsp2I	ATGCAT	1 cut(s)	1201

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.