Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0003741

Physical Location & Seq

Genomic Coordinates Forward (+)

9195951 .. 9196858

Gene Structure 908 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0069000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGGCGAGGAATTGGGGCCCTTATGACTCGGGGAAGAAGCAGGTGGCAAAGGCGATGATGGCGGAGATGGTGAGAGTTTTGGTGGATGAGAATAGGCTGAAGAGTGTTCTTGCGGAGATTGTTGGGGCCGCAAGTGTGTACTGGGCAGCTTTGTTTCTTAAAGACCCCAGGCCTAATTTCTTGTTCGGTTCAGATACCCAGAATTGCTTGCTCAATTTGATCAGTGCAAGACTCCTCTCAATAAATGCCGCTTGGCAATTTGATTCAGGACAAGGCTTAAGGTTACAATTTCTTCATTTTATGTCAATTGCGATTAATGAAGTTTCCCTTTTCGATTTGGGAAAGAAGAAGAGTAATTCAAAAACGTGGATAATTGTTGGGTCTGTACTCGGTGGACTACCACTATTGGCGTTCATGCTACTCTGGGTACATAAATACAAGGAAATGAAGCATTTGGAAGAGATGCAGAAAGCTGCAGATTTAGAAGAAGTTCTGCATATGACAACAGTTGGGGATACAAAAGCACATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0009505 GO:0030312 GO:0044464 GO:0048046 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00052 ko00561 ko00600 ko00603 map00052 map00561 map00600 map00603

Pfam Domains

Protein Families

Melibiase_2 Melibiase_2_C

Protein Analysis

176

Amino Acids

19.77

Weight (kDa)

8.99

Isoelectric Point (pI)

18.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003741)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08380 AT5G08380
fragaria_vesca	FvH4_2g12370 FvH4_2g12370 FvH4_2g12370 FvH4_4g37361
malus_domestica	MD13G1000400.v1.1 MD16G1012600.v1.1
prunus_persica	Prupe.1G352200_v2.0.a1 Prupe.1G352200_v2.0.a1
pyrus_communis	pycom13g00040 pycom16g01180 pycom2749g00030
rosa_chinensis	RchiOBHm_Chr4g0447241 RchiOBHm_Chr6g0272391
rosa_laevigata	RLG00000005594 RLG00000013676
rosa_multiflora	Rmu_co8492007.1_g000001 Rmu_sc0018949.1_g000001 Rmu_sc0018950.1_g000001
rosa_roxburghii	Rroxscaffold_5G00387600 Rroxscaffold_7G00196300
rosa_rugosa	Rorug04G0379000 Rorug06G0069000
rosa_samantha	Rh4AG440500 Rh4BG449500 Rh4CG466600 Rh4DG448000 Rh6AG184900 Rh6BG188200 Rh6CG186100 Rh6DG177900
rosa_wichuraiana	Rw4G037690 Rw6G015990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	31
Acc36I	ACCTGC	1 cut(s)	31
AciI	CCGC	4 cut(s)	62, 113, 129, 249
AcuI	CTGAAG	1 cut(s)	119
AfaI	GTAC	3 cut(s)	140, 387, 429
AflII	CTTAAG	1 cut(s)	277
AgsI	TTSAA	1 cut(s)	360
AjnI	CCWGG	1 cut(s)	167
AluBI	AGCT	2 cut(s)	149, 473
AluI	AGCT	2 cut(s)	149, 473
Ama87I	CYCGRG	1 cut(s)	28
AoxI	GGCC	3 cut(s)	16, 126, 170
ApaI	GGGCCC	1 cut(s)	20
ApeKI	GCWGC	2 cut(s)	146, 473
AseI	ATTAAT	1 cut(s)	315
Asp700I	GAANNNNTTC	1 cut(s)	489
AspS9I	GGNCC	3 cut(s)	16, 17, 126
AsuHPI	GGTGA	1 cut(s)	82
AvaI	CYCGRG	1 cut(s)	28
BaeGI	GKGCMC	1 cut(s)	20
BanII	GRGCYC	1 cut(s)	20
BbvI	GCAGC	2 cut(s)	158, 460
BccI	CCATC	2 cut(s)	52, 61
BciT130I	CCWGG	1 cut(s)	169
BciVI	GTATCC	1 cut(s)	508
BclI	TGATCA	1 cut(s)	219
BfmI	CTRYAG	1 cut(s)	474
BfrI	CTTAAG	1 cut(s)	277
BfuAI	ACCTGC	1 cut(s)	31
BfuI	GTATCC	1 cut(s)	508
BisI	GCNGC	4 cut(s)	129, 147, 249, 474
BlsI	GCNGC	4 cut(s)	130, 148, 250, 475
Bme1390I	CCNGG	1 cut(s)	169
BmeT110I	CYCGRG	1 cut(s)	28
BmgT120I	GGNCC	3 cut(s)	16, 17, 126
BmiI	GGNNCC	3 cut(s)	17, 18, 127
BmrFI	CCNGG	1 cut(s)	169
BmrI	ACTGGG	1 cut(s)	151
BmsI	GCATC	1 cut(s)	453
BmuI	ACTGGG	1 cut(s)	151
BsaJI	CCNNGG	1 cut(s)	167
Bse1I	ACTGG	1 cut(s)	146
BseBI	CCWGG	1 cut(s)	169
BseDI	CCNNGG	1 cut(s)	167
BseGI	GGATG	1 cut(s)	91
BseNI	ACTGG	1 cut(s)	146
BseRI	GAGGAG	1 cut(s)	224
BseSI	GKGCMC	1 cut(s)	20
BseXI	GCAGC	2 cut(s)	158, 460
BshFI	GGCC	3 cut(s)	18, 128, 172
BsiHKCI	CYCGRG	1 cut(s)	28
BsnI	GGCC	3 cut(s)	18, 128, 172
BsoBI	CYCGRG	1 cut(s)	28
Bsp120I	GGGCCC	1 cut(s)	16
Bsp1286I	GDGCHC	1 cut(s)	20
Bsp143I	GATC	1 cut(s)	219
BspACI	CCGC	4 cut(s)	62, 113, 129, 249
BspANI	GGCC	3 cut(s)	18, 128, 172
BspLI	GGNNCC	3 cut(s)	17, 18, 127
BspMAI	CTGCAG	1 cut(s)	478
BspMI	ACCTGC	1 cut(s)	31
BspTI	CTTAAG	1 cut(s)	277
BsrI	ACTGG	1 cut(s)	146
BssECI	CCNNGG	1 cut(s)	167
BssMI	GATC	1 cut(s)	219
Bst2UI	CCWGG	1 cut(s)	169
Bst4CI	ACNGT	1 cut(s)	508
Bst6I	CTCTTC	3 cut(s)	95, 344, 453
BstAFI	CTTAAG	1 cut(s)	277
BstC8I	GCNNGC	1 cut(s)	209
BstF5I	GGATG	1 cut(s)	91
BstKTI	GATC	1 cut(s)	222
BstMBI	GATC	1 cut(s)	219
BstMWI	GCNNNNNNNGC	1 cut(s)	59
BstNI	CCWGG	1 cut(s)	169
BstSCI	CCNGG	1 cut(s)	167
BstSFI	CTRYAG	1 cut(s)	474
BstSLI	GKGCMC	1 cut(s)	20
BstV1I	GCAGC	2 cut(s)	158, 460
BsuI	GTATCC	1 cut(s)	508
BsuRI	GGCC	3 cut(s)	18, 128, 172
BtgZI	GCGATG	1 cut(s)	68
BtsCI	GGATG	1 cut(s)	91
BtsIMutI	CAGTG	1 cut(s)	229
BveI	ACCTGC	1 cut(s)	31
Cac8I	GCNNGC	1 cut(s)	209
Cfr13I	GGNCC	3 cut(s)	16, 17, 126
Csp6I	GTAC	3 cut(s)	139, 386, 428
CviAII	CATG	1 cut(s)	415
CviJI	RGCY	7 cut(s)	18, 97, 128, 149, 172, 276, 473
CviKI_1	RGCY	7 cut(s)	18, 97, 128, 149, 172, 276, 473
CviQI	GTAC	3 cut(s)	139, 386, 428
DpnI	GATC	1 cut(s)	221
DpnII	GATC	1 cut(s)	219
Eam1104I	CTCTTC	3 cut(s)	95, 344, 453
EarI	CTCTTC	3 cut(s)	95, 344, 453
EciI	GGCGGA	1 cut(s)	77
Eco147I	AGGCCT	1 cut(s)	172
Eco24I	GRGCYC	1 cut(s)	20
Eco57I	CTGAAG	1 cut(s)	119
Eco88I	CYCGRG	1 cut(s)	28
EcoO109I	RGGNCCY	2 cut(s)	16, 17
EcoRII	CCWGG	1 cut(s)	167
EcoT38I	GRGCYC	1 cut(s)	20
FaeI	CATG	1 cut(s)	418
FaiI	YATR	6 cut(s)	24, 302, 416, 432, 498, 500
FalI	AAGNNNNNCTT	2 cut(s)	312, 344
FatI	CATG	1 cut(s)	414
FauNDI	CATATG	1 cut(s)	498
FbaI	TGATCA	1 cut(s)	219
Fnu4HI	GCNGC	4 cut(s)	129, 147, 249, 474
FokI	GGATG	1 cut(s)	98
FriOI	GRGCYC	1 cut(s)	20
Fsp4HI	GCNGC	4 cut(s)	129, 147, 249, 474
GluI	GCNGC	4 cut(s)	129, 147, 249, 474
HaeIII	GGCC	3 cut(s)	18, 128, 172
Hin1II	CATG	1 cut(s)	418
HinfI	GANTC	3 cut(s)	26, 231, 263
HphI	GGTGA	1 cut(s)	82
Hpy166II	GTNNAC	2 cut(s)	139, 395
Hpy188I	TCNGA	1 cut(s)	193
Hpy188III	TCNNGA	1 cut(s)	267
Hpy8I	GTNNAC	2 cut(s)	139, 395
HpyCH4III	ACNGT	1 cut(s)	508
HpyCH4IV	ACGT	1 cut(s)	365
HpyCH4V	TGCA	4 cut(s)	227, 466, 476, 496
HpyF10VI	GCNNNNNNNGC	1 cut(s)	59
HpySE526I	ACGT	1 cut(s)	365
Hsp92II	CATG	1 cut(s)	418
Ksp22I	TGATCA	1 cut(s)	219
Kzo9I	GATC	1 cut(s)	219
LpnPI	CCDG	7 cut(s)	26, 127, 154, 181, 212, 252, 409
Lsp1109I	GCAGC	2 cut(s)	158, 460
LweI	GCATC	1 cut(s)	453
MaeII	ACGT	1 cut(s)	365
MaeIII	GTNAC	1 cut(s)	282
MalI	GATC	1 cut(s)	221
MboI	GATC	1 cut(s)	219
MboII	GAAGA	7 cut(s)	46, 112, 284, 358, 361, 470, 497
MfeI	CAATTG	1 cut(s)	306
MhlI	GDGCHC	1 cut(s)	20
MluCI	AATT	9 cut(s)	10, 175, 202, 214, 257, 287, 306, 355, 372
MlyI	GAGTC	2 cut(s)	20, 225
MnlI	CCTC	1 cut(s)	245
MroXI	GAANNNNTTC	1 cut(s)	489
MseI	TTAA	4 cut(s)	159, 278, 315, 529
MspCI	CTTAAG	1 cut(s)	277
MspR9I	CCNGG	1 cut(s)	169
MunI	CAATTG	1 cut(s)	306
MvaI	CCWGG	1 cut(s)	169
MwoI	GCNNNNNNNGC	1 cut(s)	59
NdeI	CATATG	1 cut(s)	498
NdeII	GATC	1 cut(s)	219
NlaIII	CATG	1 cut(s)	418
NlaIV	GGNNCC	3 cut(s)	17, 18, 127
PaqCI	CACCTGC	1 cut(s)	31
PceI	AGGCCT	1 cut(s)	172
PdmI	GAANNNNTTC	1 cut(s)	489
PfeI	GAWTC	1 cut(s)	263
PkrI	GCNGC	4 cut(s)	130, 148, 250, 475
PleI	GAGTC	2 cut(s)	20, 225
PpsI	GAGTC	2 cut(s)	20, 225
PshBI	ATTAAT	1 cut(s)	315
Psp6I	CCWGG	1 cut(s)	167
PspGI	CCWGG	1 cut(s)	167
PspN4I	GGNNCC	3 cut(s)	17, 18, 127
PspOMI	GGGCCC	1 cut(s)	16
PspPI	GGNCC	3 cut(s)	16, 17, 126
PstI	CTGCAG	1 cut(s)	478
RsaI	GTAC	3 cut(s)	140, 387, 429
RsaNI	GTAC	3 cut(s)	139, 386, 428
SaqAI	TTAA	4 cut(s)	159, 278, 315, 529
SatI	GCNGC	4 cut(s)	129, 147, 249, 474
Sau3AI	GATC	1 cut(s)	219
Sau96I	GGNCC	3 cut(s)	16, 17, 126
SchI	GAGTC	2 cut(s)	20, 225
ScrFI	CCNGG	1 cut(s)	169
SduI	GDGCHC	1 cut(s)	20
SetI	ASST	5 cut(s)	45, 151, 284, 368, 475
SfaNI	GCATC	1 cut(s)	453
SfcI	CTRYAG	1 cut(s)	474
SmlI	CTYRAG	1 cut(s)	277
SmoI	CTYRAG	1 cut(s)	277
Sse9I	AATT	9 cut(s)	10, 175, 202, 214, 257, 287, 306, 355, 372
SseBI	AGGCCT	1 cut(s)	172
SsiI	CCGC	4 cut(s)	62, 113, 129, 249
StuI	AGGCCT	1 cut(s)	172
StyD4I	CCNGG	1 cut(s)	167
TaaI	ACNGT	1 cut(s)	508
TaiI	ACGT	1 cut(s)	368
TaqI	TCGA	1 cut(s)	333
TasI	AATT	9 cut(s)	10, 175, 202, 214, 257, 287, 306, 355, 372
TatI	WGTACW	2 cut(s)	138, 385
TauI	GCSGC	2 cut(s)	131, 251
TfiI	GAWTC	1 cut(s)	263
Tru1I	TTAA	4 cut(s)	159, 278, 315, 529
Tru9I	TTAA	4 cut(s)	159, 278, 315, 529
TscAI	CASTG	1 cut(s)	229
TseI	GCWGC	2 cut(s)	146, 473
TspDTI	ATGAA	4 cut(s)	284, 333, 403, 461
TspRI	CASTG	1 cut(s)	229
Vha464I	CTTAAG	1 cut(s)	277
VspI	ATTAAT	1 cut(s)	315
XmnI	GAANNNNTTC	1 cut(s)	489

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.