Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0003741

Physical Location & Seq

Genomic Coordinates Reverse (-)

32489006 .. 32491996

Gene Structure 2991 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG184900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1212 bp

ATGAAGAAAAAGGCCTGTGGCAGTGCTGTGCCAACATCAATGATTGTAATGGCAGTGATGCTATGCTCACTCAAGTTAATGGGTGTTTCTGCTTCGCAACTCAGACGAAATCTGCTTGCCAATGGCCTTGGAGTGACTCCTCCAATGGGGTGGAATAGTTGGAATCACTTCAACTGCAAAATTGAGGAGAAAACCATCAAAGAAACTGCTGATGCTCTGGTATCCACTGGTCTCTCTAAACTTGGATATAACTATGTTAACATAGATGATTGCTGGGCAGAAATAGCTCGCGATGTAAAGGGTAATCTAGTGGCCAAGAAATCGGCATTTCCATCAGGCATTAAAGCTCTTGCGGATTATGTCCACAGCAAGGGTCTTAAGCTAGGAATCTACTCAGATGCAGGGTACTTTACTTGCAGCAAAACTATGCCTGGTTCACTTGGTCATGAAGAACAAGATGCCAATACCTTTGCTGCTTGGGGCATCGATTATTTGAAATATGATAACTGTTATAATGATGGCTCAAACCCAACTGTTAGATACCCTGTAATGACCCGAGCTCTAATGAAAGCCAGCCGTCCCATATTCTTCTCTCTCTGCGAATGGGGAGATATGCACCCTGCTTTATGGGGTGCCAAGTTAGGAAATAGCTGGAGAACTACAAAAGACATTTCTGATACATGGGAAAGTATGGTCTCCAGAGCAGACATGAATGAATTTTATGCTGAATATGCTAGGCCTGGTGGTTGGAATGATCCCGACATGCTTGAAGTGGGAAATGGAGGAATGACAAAAGATGAATATGTAGTTCATTTTAGCATATGGGCAATCTCAAAGGCTCCCCTTCTTCTTGGTTGTGATGTAAGGAATATGACAAAAGAGACTCTGGAGATCGTTGCAAATAAAGAGGTCATCTCTGTCAACCAAGATCCACTTGGTGTCCAAGCTAAAAAAGTTAGACTGGAAGGAGATCTTGAGATCTGGGCTGGGCCACTTTCAGGGTACAGAGTAGCTTTACTCCTTATCAACCAAGGCCCTTCGAACAATTCCATTACAGCTCAATGGGAAGACGTAGGCATCCCCCCAAATACTGTTGTTGAAGCAAGAGACCTTTGGGAGCATAAGACACTCAAGACGCGATTCGTTGGAAACTTGACAGCCACCATGAACTCTCATGCATGTAAAATGTATGTGTTGAAGCCAGTCTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0009505 GO:0030312 GO:0044464 GO:0048046 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00052 ko00561 ko00600 ko00603 map00052 map00561 map00600 map00603

Pfam Domains

Protein Families

Melibiase_2 Melibiase_2_C

Protein Analysis

403

Amino Acids

44.53

Weight (kDa)

7.53

Isoelectric Point (pI)

27.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Melibiase_2	PF16499	46 - 310	3.1e-75	Alpha galactosidase A
Melibiase_C	PF17801	322 - 399	7.8e-18	Alpha galactosidase C-terminal beta sandwich domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003741)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08380 AT5G08380
fragaria_vesca	FvH4_2g12370 FvH4_2g12370 FvH4_2g12370 FvH4_4g37361
malus_domestica	MD13G1000400.v1.1 MD16G1012600.v1.1
prunus_persica	Prupe.1G352200_v2.0.a1 Prupe.1G352200_v2.0.a1
pyrus_communis	pycom13g00040 pycom16g01180 pycom2749g00030
rosa_chinensis	RchiOBHm_Chr4g0447241 RchiOBHm_Chr6g0272391
rosa_laevigata	RLG00000005594 RLG00000013676
rosa_multiflora	Rmu_co8492007.1_g000001 Rmu_sc0018949.1_g000001 Rmu_sc0018950.1_g000001
rosa_roxburghii	Rroxscaffold_5G00387600 Rroxscaffold_7G00196300
rosa_rugosa	Rorug04G0379000 Rorug06G0069000
rosa_samantha	Rh4AG440500 Rh4BG449500 Rh4CG466600 Rh4DG448000 Rh6AG184900 Rh6BG188200 Rh6CG186100 Rh6DG177900
rosa_wichuraiana	Rw4G037690 Rw6G015990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	513
AccB1I	GGYRCC	1 cut(s)	632
AccII	CGCG	2 cut(s)	291, 1138
AciI	CCGC	1 cut(s)	353
AclWI	GGATC	2 cut(s)	749, 923
AcoI	YGGCCR	1 cut(s)	312
AcsI	RAATTY	1 cut(s)	716
AdeI	CACNNNGTG	1 cut(s)	938
AfaI	GTAC	2 cut(s)	407, 1004
AfiI	CCNNNNNNNGG	3 cut(s)	146, 370, 998
AflII	CTTAAG	1 cut(s)	377
AgsI	TTSAA	5 cut(s)	172, 496, 770, 1100, 1198
AjnI	CCWGG	2 cut(s)	430, 739
AluBI	AGCT	8 cut(s)	287, 347, 382, 560, 651, 947, 1013, 1058
AluI	AGCT	8 cut(s)	287, 347, 382, 560, 651, 947, 1013, 1058
Alw21I	GWGCWC	1 cut(s)	562
Alw26I	GTCTC	4 cut(s)	236, 700, 875, 1101
AlwI	GGATC	2 cut(s)	749, 923
Ama87I	CYCGRG	1 cut(s)	555
AoxI	GGCC	6 cut(s)	12, 124, 312, 737, 989, 1033
ApeKI	GCWGC	2 cut(s)	417, 473
ApoI	RAATTY	1 cut(s)	716
Asp700I	GAANNNNTTC	1 cut(s)	167
AspS9I	GGNCC	2 cut(s)	989, 1034
AsuII	TTCGAA	1 cut(s)	1040
AvaI	CYCGRG	1 cut(s)	555
BalI	TGGCCA	1 cut(s)	314
BanI	GGYRCC	1 cut(s)	632
BanII	GRGCYC	1 cut(s)	562
BbsI	GAAGAC	1 cut(s)	1074
Bbv12I	GWGCWC	1 cut(s)	562
BbvI	GCAGC	2 cut(s)	429, 460
BccI	CCATC	3 cut(s)	203, 340, 512
BceAI	ACGGC	1 cut(s)	561
BciT130I	CCWGG	2 cut(s)	432, 741
BciVI	GTATCC	1 cut(s)	232
BcoDI	GTCTC	4 cut(s)	236, 700, 875, 1101
BfaI	CTAG	3 cut(s)	308, 383, 735
BfrI	CTTAAG	1 cut(s)	377
BfuI	GTATCC	1 cut(s)	232
BglII	AGATCT	2 cut(s)	970, 978
BisI	GCNGC	2 cut(s)	418, 474
BlsI	GCNGC	2 cut(s)	419, 475
Bme1390I	CCNGG	2 cut(s)	432, 741
BmeT110I	CYCGRG	1 cut(s)	555
BmgT120I	GGNCC	2 cut(s)	989, 1034
BmiI	GGNNCC	2 cut(s)	634, 840
BmrFI	CCNGG	2 cut(s)	432, 741
BmsI	GCATC	6 cut(s)	48, 202, 388, 448, 492, 1086
BpiI	GAAGAC	1 cut(s)	1074
BplI	GAGNNNNNCTC	2 cut(s)	899, 931
BpmI	CTGGAG	3 cut(s)	673, 682, 908
Bpu14I	TTCGAA	1 cut(s)	1040
BpuEI	CTTGAG	3 cut(s)	56, 995, 1115
Bsa29I	ATCGAT	1 cut(s)	486
BsaI	GGTCTC	3 cut(s)	236, 700, 1101
BsaJI	CCNNGG	2 cut(s)	127, 1030
Bsc4I	CCNNNNNNNGG	3 cut(s)	146, 370, 998
Bse1I	ACTGG	3 cut(s)	232, 966, 1202
BseBI	CCWGG	2 cut(s)	432, 741
BseCI	ATCGAT	1 cut(s)	486
BseDI	CCNNGG	2 cut(s)	127, 1030
BseGI	GGATG	1 cut(s)	1077
BseLI	CCNNNNNNNGG	3 cut(s)	146, 370, 998
BseMII	CTCAG	2 cut(s)	115, 408
BseNI	ACTGG	3 cut(s)	232, 966, 1202
BseRI	GAGGAG	2 cut(s)	129, 200
BseXI	GCAGC	2 cut(s)	429, 460
BseYI	CCCAGC	2 cut(s)	273, 986
Bsh1236I	CGCG	2 cut(s)	291, 1138
BshFI	GGCC	6 cut(s)	14, 126, 314, 739, 991, 1035
BshNI	GGYRCC	1 cut(s)	632
BshVI	ATCGAT	1 cut(s)	486
BsiHKAI	GWGCWC	1 cut(s)	562
BsiHKCI	CYCGRG	1 cut(s)	555
BslFI	GGGAC	1 cut(s)	564
BslI	CCNNNNNNNGG	3 cut(s)	146, 370, 998
BsmAI	GTCTC	4 cut(s)	236, 700, 875, 1101
BsmFI	GGGAC	1 cut(s)	564
BsnI	GGCC	6 cut(s)	14, 126, 314, 739, 991, 1035
Bso31I	GGTCTC	3 cut(s)	236, 700, 1101
BsoBI	CYCGRG	1 cut(s)	555
Bsp119I	TTCGAA	1 cut(s)	1040
Bsp1286I	GDGCHC	1 cut(s)	562
Bsp143I	GATC	5 cut(s)	754, 891, 928, 970, 978
Bsp68I	TCGCGA	1 cut(s)	291
BspACI	CCGC	1 cut(s)	353
BspANI	GGCC	6 cut(s)	14, 126, 314, 739, 991, 1035
BspCNI	CTCAG	2 cut(s)	114, 407
BspDI	ATCGAT	1 cut(s)	486
BspFNI	CGCG	2 cut(s)	291, 1138
BspHI	TCATGA	2 cut(s)	445, 1208
BspLI	GGNNCC	2 cut(s)	634, 840
BspPI	GGATC	2 cut(s)	749, 923
BspT104I	TTCGAA	1 cut(s)	1040
BspT107I	GGYRCC	1 cut(s)	632
BspTI	CTTAAG	1 cut(s)	377
BspTNI	GGTCTC	3 cut(s)	236, 700, 1101
BsrI	ACTGG	3 cut(s)	232, 966, 1202
BssECI	CCNNGG	2 cut(s)	127, 1030
BssMI	GATC	5 cut(s)	754, 891, 928, 970, 978
BssT1I	CCWWGG	2 cut(s)	127, 1030
Bst2UI	CCWGG	2 cut(s)	432, 741
Bst4CI	ACNGT	3 cut(s)	509, 535, 1093
BstAFI	CTTAAG	1 cut(s)	377
BstBI	TTCGAA	1 cut(s)	1040
BstC8I	GCNNGC	3 cut(s)	117, 289, 574
BstDEI	CTNAG	2 cut(s)	101, 394
BstF5I	GGATG	1 cut(s)	1077
BstFNI	CGCG	2 cut(s)	291, 1138
BstKTI	GATC	5 cut(s)	757, 894, 931, 973, 981
BstMAI	GTCTC	4 cut(s)	236, 700, 875, 1101
BstMBI	GATC	5 cut(s)	754, 891, 928, 970, 978
BstMWI	GCNNNNNNNGC	2 cut(s)	284, 731
BstNI	CCWGG	2 cut(s)	432, 741
BstNSI	RCATGY	2 cut(s)	766, 1182
BstSCI	CCNGG	2 cut(s)	430, 739
BstUI	CGCG	2 cut(s)	291, 1138
BstV1I	GCAGC	2 cut(s)	429, 460
BstV2I	GAAGAC	1 cut(s)	1074
BstX2I	RGATCY	3 cut(s)	928, 970, 978
BstXI	CCANNNNNNTGG	1 cut(s)	150
BstYI	RGATCY	3 cut(s)	928, 970, 978
Bsu15I	ATCGAT	1 cut(s)	486
BsuI	GTATCC	1 cut(s)	232
BsuRI	GGCC	6 cut(s)	14, 126, 314, 739, 991, 1035
BsuTUI	ATCGAT	1 cut(s)	486
BtgZI	GCGATG	1 cut(s)	306
BtsCI	GGATG	1 cut(s)	1077
BtsI	GCAGTG	2 cut(s)	28, 60
BtsIMutI	CAGTG	3 cut(s)	28, 60, 225
BtuMI	TCGCGA	1 cut(s)	291
Cac8I	GCNNGC	3 cut(s)	117, 289, 574
CciI	TCATGA	2 cut(s)	445, 1208
Cfr13I	GGNCC	2 cut(s)	989, 1034
ClaI	ATCGAT	1 cut(s)	486
CseI	GACGC	1 cut(s)	1144
Csp6I	GTAC	2 cut(s)	406, 1003
CviAII	CATG	8 cut(s)	446, 681, 709, 763, 1165, 1175, 1179, 1209
CviQI	GTAC	2 cut(s)	406, 1003
DdeI	CTNAG	2 cut(s)	101, 394
DpnI	GATC	5 cut(s)	756, 893, 930, 972, 980
DpnII	GATC	5 cut(s)	754, 891, 928, 970, 978
DraIII	CACNNNGTG	1 cut(s)	938
EaeI	YGGCCR	1 cut(s)	312
Ecl136II	GAGCTC	1 cut(s)	560
Eco130I	CCWWGG	2 cut(s)	127, 1030
Eco147I	AGGCCT	2 cut(s)	14, 739
Eco24I	GRGCYC	1 cut(s)	562
Eco31I	GGTCTC	3 cut(s)	236, 700, 1101
Eco53kI	GAGCTC	1 cut(s)	560
Eco88I	CYCGRG	1 cut(s)	555
EcoICRI	GAGCTC	1 cut(s)	560
EcoO109I	RGGNCCY	1 cut(s)	1034
EcoRII	CCWGG	2 cut(s)	430, 739
EcoT14I	CCWWGG	2 cut(s)	127, 1030
EcoT22I	ATGCAT	1 cut(s)	1180
EcoT38I	GRGCYC	1 cut(s)	562
ErhI	CCWWGG	2 cut(s)	127, 1030
FaeI	CATG	8 cut(s)	449, 684, 712, 766, 1168, 1178, 1182, 1212
FalI	AAGNNNNNCTT	4 cut(s)	918, 950, 957, 989
FaqI	GGGAC	1 cut(s)	564
FatI	CATG	8 cut(s)	445, 680, 708, 762, 1164, 1174, 1178, 1208
FauNDI	CATATG	1 cut(s)	821
Fnu4HI	GCNGC	2 cut(s)	418, 474
FokI	GGATG	1 cut(s)	1064
FriOI	GRGCYC	1 cut(s)	562
Fsp4HI	GCNGC	2 cut(s)	418, 474
FspBI	CTAG	3 cut(s)	308, 383, 735
GluI	GCNGC	2 cut(s)	418, 474
GsaI	CCCAGC	2 cut(s)	277, 990
GsuI	CTGGAG	3 cut(s)	673, 682, 908
HaeIII	GGCC	6 cut(s)	14, 126, 314, 739, 991, 1035
HgaI	GACGC	1 cut(s)	1144
Hin1II	CATG	8 cut(s)	449, 684, 712, 766, 1168, 1178, 1182, 1212
HincII	GTYRAC	2 cut(s)	259, 922
HindII	GTYRAC	2 cut(s)	259, 922
HinfI	GANTC	5 cut(s)	136, 163, 387, 883, 1140
HpaI	GTTAAC	1 cut(s)	259
Hpy166II	GTNNAC	4 cut(s)	259, 364, 437, 922
Hpy188I	TCNGA	3 cut(s)	104, 397, 676
Hpy188III	TCNNGA	8 cut(s)	290, 446, 699, 758, 887, 974, 1132, 1209
Hpy8I	GTNNAC	4 cut(s)	259, 364, 437, 922
HpyAV	CCTTC	3 cut(s)	854, 959, 1047
HpyCH4III	ACNGT	3 cut(s)	509, 535, 1093
HpyCH4IV	ACGT	1 cut(s)	1071
HpyCH4V	TGCA	6 cut(s)	177, 401, 417, 616, 899, 1178
HpyF10VI	GCNNNNNNNGC	2 cut(s)	284, 731
HpyF3I	CTNAG	2 cut(s)	101, 394
HpySE526I	ACGT	1 cut(s)	1071
Hsp92II	CATG	8 cut(s)	449, 684, 712, 766, 1168, 1178, 1182, 1212
KspAI	GTTAAC	1 cut(s)	259
Kzo9I	GATC	5 cut(s)	754, 891, 928, 970, 978
LmnI	GCTCC	2 cut(s)	844, 1117
Lsp1109I	GCAGC	2 cut(s)	429, 460
LweI	GCATC	6 cut(s)	48, 202, 388, 448, 492, 1086
MaeI	CTAG	3 cut(s)	308, 383, 735
MaeII	ACGT	1 cut(s)	1071
MaeIII	GTNAC	1 cut(s)	133
MalI	GATC	5 cut(s)	756, 893, 930, 972, 980
MboI	GATC	5 cut(s)	754, 891, 928, 970, 978
MboII	GAAGA	5 cut(s)	16, 461, 580, 839, 1079
MflI	RGATCY	3 cut(s)	928, 970, 978
MhlI	GDGCHC	1 cut(s)	562
MlsI	TGGCCA	1 cut(s)	314
MluCI	AATT	3 cut(s)	180, 716, 1045
MluNI	TGGCCA	1 cut(s)	314
MlyI	GAGTC	2 cut(s)	130, 877
MmeI	TCCRAC	3 cut(s)	140, 728, 1126
MnlI	CCTC	4 cut(s)	150, 178, 776, 901
Mox20I	TGGCCA	1 cut(s)	314
Mph1103I	ATGCAT	1 cut(s)	1180
MroXI	GAANNNNTTC	1 cut(s)	167
MscI	TGGCCA	1 cut(s)	314
MseI	TTAA	4 cut(s)	77, 258, 342, 378
Msp20I	TGGCCA	1 cut(s)	314
MspCI	CTTAAG	1 cut(s)	377
MspR9I	CCNGG	2 cut(s)	432, 741
MvaI	CCWGG	2 cut(s)	432, 741
MvnI	CGCG	2 cut(s)	291, 1138
MwoI	GCNNNNNNNGC	2 cut(s)	284, 731
NdeI	CATATG	1 cut(s)	821
NdeII	GATC	5 cut(s)	754, 891, 928, 970, 978
NlaIII	CATG	8 cut(s)	449, 684, 712, 766, 1168, 1178, 1182, 1212
NlaIV	GGNNCC	2 cut(s)	634, 840
NmuCI	GTSAC	1 cut(s)	133
NruI	TCGCGA	1 cut(s)	291
NsiI	ATGCAT	1 cut(s)	1180
NspI	RCATGY	2 cut(s)	766, 1182
NspV	TTCGAA	1 cut(s)	1040
PagI	TCATGA	2 cut(s)	445, 1208
PceI	AGGCCT	2 cut(s)	14, 739
PdmI	GAANNNNTTC	1 cut(s)	167
PfeI	GAWTC	3 cut(s)	163, 387, 1140
PkrI	GCNGC	2 cut(s)	419, 475
PleI	GAGTC	2 cut(s)	130, 877
PpsI	GAGTC	2 cut(s)	130, 877
PsiI	TTATAA	1 cut(s)	513
Psp124BI	GAGCTC	1 cut(s)	562
Psp6I	CCWGG	2 cut(s)	430, 739
PspFI	CCCAGC	2 cut(s)	273, 986
PspGI	CCWGG	2 cut(s)	430, 739
PspN4I	GGNNCC	2 cut(s)	634, 840
PspPI	GGNCC	2 cut(s)	989, 1034
PsuI	RGATCY	3 cut(s)	928, 970, 978
RruI	TCGCGA	1 cut(s)	291
RsaI	GTAC	2 cut(s)	407, 1004
RsaNI	GTAC	2 cut(s)	406, 1003
SacI	GAGCTC	1 cut(s)	562
SaqAI	TTAA	4 cut(s)	77, 258, 342, 378
SatI	GCNGC	2 cut(s)	418, 474
Sau3AI	GATC	5 cut(s)	754, 891, 928, 970, 978
Sau96I	GGNCC	2 cut(s)	989, 1034
SchI	GAGTC	2 cut(s)	130, 877
ScrFI	CCNGG	2 cut(s)	432, 741
SduI	GDGCHC	1 cut(s)	562
SfaNI	GCATC	6 cut(s)	48, 202, 388, 448, 492, 1086
SfuI	TTCGAA	1 cut(s)	1040
SmlI	CTYRAG	4 cut(s)	71, 377, 974, 1130
SmoI	CTYRAG	4 cut(s)	71, 377, 974, 1130
Sse9I	AATT	3 cut(s)	180, 716, 1045
SseBI	AGGCCT	2 cut(s)	14, 739
SsiI	CCGC	1 cut(s)	353
SspMI	CTAG	3 cut(s)	308, 383, 735
SstI	GAGCTC	1 cut(s)	562
StuI	AGGCCT	2 cut(s)	14, 739
StyD4I	CCNGG	2 cut(s)	430, 739
StyI	CCWWGG	2 cut(s)	127, 1030
TaaI	ACNGT	3 cut(s)	509, 535, 1093
TaiI	ACGT	1 cut(s)	1074
TaqI	TCGA	2 cut(s)	486, 1040
TasI	AATT	3 cut(s)	180, 716, 1045
TfiI	GAWTC	3 cut(s)	163, 387, 1140
Tru1I	TTAA	4 cut(s)	77, 258, 342, 378
Tru9I	TTAA	4 cut(s)	77, 258, 342, 378
TscAI	CASTG	3 cut(s)	28, 60, 232
TseFI	GTSAC	1 cut(s)	133
TseI	GCWGC	2 cut(s)	417, 473
Tsp45I	GTSAC	1 cut(s)	133
TspDTI	ATGAA	8 cut(s)	17, 462, 581, 725, 729, 800, 813, 1181
TspRI	CASTG	3 cut(s)	28, 60, 232
Vha464I	CTTAAG	1 cut(s)	377
XapI	RAATTY	1 cut(s)	716
XceI	RCATGY	2 cut(s)	766, 1182
XcmI	CCANNNNNNNNNTGG	1 cut(s)	932
XmnI	GAANNNNTTC	1 cut(s)	167
XspI	CTAG	3 cut(s)	308, 383, 735
Zsp2I	ATGCAT	1 cut(s)	1180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.