Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0003741

Physical Location & Seq

Genomic Coordinates Reverse (-)

34887062 .. 34890558

Gene Structure 3497 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG188200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGCATCTTTCTTTTTTTGTTGGACTGAAAGATGTTGGTTTTTTTTTTTTACTCATACCGGTCACCGACAGTTTTTGTTTGTATCGTTTGACAGCTGATGCTCTGGCATCCACTGGTCTCTCTAAACTTGGATATAACTATGTTAACATAGATGATTGCTGGGCAGAAATAGCTCGCGATGTAAAGGGTAATCTAGTGGCCAAGAAATCGGCATTTCCATCAGGCATTAAAGCTCTTGCGGATTATGTCCACAGCAAGGGTCTTAAGCTAGGAATCTACTCAGATGCAGGGTACTTTACTTGCAGCAAAACTATGCCTGGTTCACTTGGTCATGAAGAACAAGATGCCAATACCTTTGCTGCTTGGGGCATCGATTATTTGAAATATGATAACTGTTATAATGATGGCTCAAACCCAACTGTTAGATACCCTGTAATGACCCGAGCTCTAATGAAAGCCAGCCGTCCCATATTCTTCTCTCTCTGCGAATGGGGAGATATGCACCCTGCTTTATGGGGTGCCAAGTTAGGAAATAGCTGGAGAACTACAAAAGACATTTCTGATACATGGGAAAGTATGGTCTCCAGAGCAGACATGAATGAATTTTATGCTGAATATGCTAGGCCTGGTGGTTGGAATGATCCCGACATGCTTGAAGTGGGAAATGGAGGAATGACAAAAGATGAATATGTAGTTCATTTTAGCATATGGGCAATCTCAAAGGCTCCCCTTCTTCTTGGTTGTGATGTAAGGAATATGACAAAAGAGACTCTGGAGATCGTTGCAAATAAAGAGGTCATCTCTGTCAACCAAGATCCACTTGGTGTCCAAGCTAAAAAAGTTAGACTGGAAGGAGATCTTGAGATCTGGGCTGGGCCACTTTCAGGGTACAGAGTAGCTTTACTCCTTATCAACCAAGGCCCTTCGAACAATTCCATTACAGCTCAATGGGAAGACGTAGGCATCCCCCCAAATACTGTTGTTGAAGCAAGAGACCTTTGGGAGCATAAGACACTCAAGACGCGATTCGTTGGAAACTTGACAGCCACCATGAACTCTCATGCATGTAAAATGTATGTGTTGAAGCCAGTCTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0009505 GO:0030312 GO:0044464 GO:0048046 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00052 ko00561 ko00600 ko00603 map00052 map00561 map00600 map00603

Pfam Domains

Protein Families

Melibiase_2 Melibiase_2_C

Protein Analysis

365

Amino Acids

40.58

Weight (kDa)

5.85

Isoelectric Point (pI)

24.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Melibiase_2	PF16499	27 - 272	1.2e-70	Alpha galactosidase A
Melibiase_C	PF17801	284 - 361	6.6e-18	Alpha galactosidase C-terminal beta sandwich domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003741)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08380 AT5G08380
fragaria_vesca	FvH4_2g12370 FvH4_2g12370 FvH4_2g12370 FvH4_4g37361
malus_domestica	MD13G1000400.v1.1 MD16G1012600.v1.1
prunus_persica	Prupe.1G352200_v2.0.a1 Prupe.1G352200_v2.0.a1
pyrus_communis	pycom13g00040 pycom16g01180 pycom2749g00030
rosa_chinensis	RchiOBHm_Chr4g0447241 RchiOBHm_Chr6g0272391
rosa_laevigata	RLG00000005594 RLG00000013676
rosa_multiflora	Rmu_co8492007.1_g000001 Rmu_sc0018949.1_g000001 Rmu_sc0018950.1_g000001
rosa_roxburghii	Rroxscaffold_5G00387600 Rroxscaffold_7G00196300
rosa_rugosa	Rorug04G0379000 Rorug06G0069000
rosa_samantha	Rh4AG440500 Rh4BG449500 Rh4CG466600 Rh4DG448000 Rh6AG184900 Rh6BG188200 Rh6CG186100 Rh6DG177900
rosa_wichuraiana	Rw4G037690 Rw6G015990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	399
AccB1I	GGYRCC	1 cut(s)	518
AccII	CGCG	2 cut(s)	177, 1024
AciI	CCGC	1 cut(s)	239
AclWI	GGATC	2 cut(s)	635, 809
AcoI	YGGCCR	1 cut(s)	198
AcsI	RAATTY	1 cut(s)	602
AdeI	CACNNNGTG	1 cut(s)	824
AfaI	GTAC	2 cut(s)	293, 890
AfiI	CCNNNNNNNGG	2 cut(s)	256, 884
AflII	CTTAAG	1 cut(s)	263
AgeI	ACCGGT	1 cut(s)	58
AgsI	TTSAA	4 cut(s)	382, 656, 986, 1084
AjnI	CCWGG	2 cut(s)	316, 625
AluBI	AGCT	9 cut(s)	95, 173, 233, 268, 446, 537, 833, 899, 944
AluI	AGCT	9 cut(s)	95, 173, 233, 268, 446, 537, 833, 899, 944
Alw21I	GWGCWC	1 cut(s)	448
Alw26I	GTCTC	4 cut(s)	122, 586, 761, 987
AlwI	GGATC	2 cut(s)	635, 809
Ama87I	CYCGRG	1 cut(s)	441
AoxI	GGCC	4 cut(s)	198, 623, 875, 919
ApeKI	GCWGC	2 cut(s)	303, 359
ApoI	RAATTY	1 cut(s)	602
AsiGI	ACCGGT	1 cut(s)	58
AspS9I	GGNCC	2 cut(s)	875, 920
AsuHPI	GGTGA	1 cut(s)	55
AsuII	TTCGAA	1 cut(s)	926
AvaI	CYCGRG	1 cut(s)	441
BalI	TGGCCA	1 cut(s)	200
BanI	GGYRCC	1 cut(s)	518
BanII	GRGCYC	1 cut(s)	448
BbsI	GAAGAC	1 cut(s)	960
Bbv12I	GWGCWC	1 cut(s)	448
BbvI	GCAGC	2 cut(s)	315, 346
BccI	CCATC	2 cut(s)	226, 398
BceAI	ACGGC	1 cut(s)	447
BciT130I	CCWGG	2 cut(s)	318, 627
BcoDI	GTCTC	4 cut(s)	122, 586, 761, 987
BfaI	CTAG	3 cut(s)	194, 269, 621
BfrI	CTTAAG	1 cut(s)	263
BglII	AGATCT	2 cut(s)	856, 864
BisI	GCNGC	2 cut(s)	304, 360
BlsI	GCNGC	2 cut(s)	305, 361
Bme1390I	CCNGG	2 cut(s)	318, 627
BmeT110I	CYCGRG	1 cut(s)	441
BmgT120I	GGNCC	2 cut(s)	875, 920
BmiI	GGNNCC	2 cut(s)	520, 726
BmrFI	CCNGG	2 cut(s)	318, 627
BmsI	GCATC	7 cut(s)	13, 88, 116, 274, 334, 378, 972
BpiI	GAAGAC	1 cut(s)	960
BplI	GAGNNNNNCTC	2 cut(s)	785, 817
BpmI	CTGGAG	3 cut(s)	559, 568, 794
Bpu14I	TTCGAA	1 cut(s)	926
BpuEI	CTTGAG	2 cut(s)	881, 1001
Bsa29I	ATCGAT	1 cut(s)	372
BsaI	GGTCTC	3 cut(s)	122, 586, 987
BsaJI	CCNNGG	1 cut(s)	916
BsaWI	WCCGGW	1 cut(s)	58
Bsc4I	CCNNNNNNNGG	2 cut(s)	256, 884
Bse118I	RCCGGY	1 cut(s)	58
Bse1I	ACTGG	3 cut(s)	118, 852, 1088
BseBI	CCWGG	2 cut(s)	318, 627
BseCI	ATCGAT	1 cut(s)	372
BseDI	CCNNGG	1 cut(s)	916
BseGI	GGATG	2 cut(s)	107, 963
BseLI	CCNNNNNNNGG	2 cut(s)	256, 884
BseMII	CTCAG	1 cut(s)	294
BseNI	ACTGG	3 cut(s)	118, 852, 1088
BseXI	GCAGC	2 cut(s)	315, 346
BseYI	CCCAGC	2 cut(s)	159, 872
Bsh1236I	CGCG	2 cut(s)	177, 1024
BshFI	GGCC	4 cut(s)	200, 625, 877, 921
BshNI	GGYRCC	1 cut(s)	518
BshTI	ACCGGT	1 cut(s)	58
BshVI	ATCGAT	1 cut(s)	372
BsiHKAI	GWGCWC	1 cut(s)	448
BsiHKCI	CYCGRG	1 cut(s)	441
BsiSI	CCGG	1 cut(s)	59
BslFI	GGGAC	1 cut(s)	450
BslI	CCNNNNNNNGG	2 cut(s)	256, 884
BsmAI	GTCTC	4 cut(s)	122, 586, 761, 987
BsmFI	GGGAC	1 cut(s)	450
BsnI	GGCC	4 cut(s)	200, 625, 877, 921
Bso31I	GGTCTC	3 cut(s)	122, 586, 987
BsoBI	CYCGRG	1 cut(s)	441
Bsp119I	TTCGAA	1 cut(s)	926
Bsp1286I	GDGCHC	1 cut(s)	448
Bsp143I	GATC	5 cut(s)	640, 777, 814, 856, 864
Bsp68I	TCGCGA	1 cut(s)	177
BspACI	CCGC	1 cut(s)	239
BspANI	GGCC	4 cut(s)	200, 625, 877, 921
BspCNI	CTCAG	1 cut(s)	293
BspDI	ATCGAT	1 cut(s)	372
BspFNI	CGCG	2 cut(s)	177, 1024
BspHI	TCATGA	2 cut(s)	331, 1094
BspLI	GGNNCC	2 cut(s)	520, 726
BspPI	GGATC	2 cut(s)	635, 809
BspT104I	TTCGAA	1 cut(s)	926
BspT107I	GGYRCC	1 cut(s)	518
BspTI	CTTAAG	1 cut(s)	263
BspTNI	GGTCTC	3 cut(s)	122, 586, 987
BsrFI	RCCGGY	1 cut(s)	58
BsrI	ACTGG	3 cut(s)	118, 852, 1088
BssAI	RCCGGY	1 cut(s)	58
BssECI	CCNNGG	1 cut(s)	916
BssMI	GATC	5 cut(s)	640, 777, 814, 856, 864
BssT1I	CCWWGG	1 cut(s)	916
Bst2UI	CCWGG	2 cut(s)	318, 627
Bst4CI	ACNGT	4 cut(s)	71, 395, 421, 979
BstAFI	CTTAAG	1 cut(s)	263
BstBI	TTCGAA	1 cut(s)	926
BstC8I	GCNNGC	2 cut(s)	175, 460
BstDEI	CTNAG	1 cut(s)	280
BstEII	GGTNACC	1 cut(s)	61
BstF5I	GGATG	2 cut(s)	107, 963
BstFNI	CGCG	2 cut(s)	177, 1024
BstKTI	GATC	5 cut(s)	643, 780, 817, 859, 867
BstMAI	GTCTC	4 cut(s)	122, 586, 761, 987
BstMBI	GATC	5 cut(s)	640, 777, 814, 856, 864
BstMWI	GCNNNNNNNGC	2 cut(s)	170, 617
BstNI	CCWGG	2 cut(s)	318, 627
BstNSI	RCATGY	2 cut(s)	652, 1068
BstPI	GGTNACC	1 cut(s)	61
BstSCI	CCNGG	2 cut(s)	316, 625
BstUI	CGCG	2 cut(s)	177, 1024
BstV1I	GCAGC	2 cut(s)	315, 346
BstV2I	GAAGAC	1 cut(s)	960
BstX2I	RGATCY	3 cut(s)	814, 856, 864
BstYI	RGATCY	3 cut(s)	814, 856, 864
Bsu15I	ATCGAT	1 cut(s)	372
BsuRI	GGCC	4 cut(s)	200, 625, 877, 921
BsuTUI	ATCGAT	1 cut(s)	372
BtgZI	GCGATG	1 cut(s)	192
BtsCI	GGATG	2 cut(s)	107, 963
BtsIMutI	CAGTG	1 cut(s)	111
BtuMI	TCGCGA	1 cut(s)	177
Cac8I	GCNNGC	2 cut(s)	175, 460
CciI	TCATGA	2 cut(s)	331, 1094
Cfr10I	RCCGGY	1 cut(s)	58
Cfr13I	GGNCC	2 cut(s)	875, 920
ClaI	ATCGAT	1 cut(s)	372
CseI	GACGC	1 cut(s)	1030
Csp6I	GTAC	2 cut(s)	292, 889
CspAI	ACCGGT	1 cut(s)	58
CviAII	CATG	8 cut(s)	332, 567, 595, 649, 1051, 1061, 1065, 1095
CviQI	GTAC	2 cut(s)	292, 889
DdeI	CTNAG	1 cut(s)	280
DpnI	GATC	5 cut(s)	642, 779, 816, 858, 866
DpnII	GATC	5 cut(s)	640, 777, 814, 856, 864
DraIII	CACNNNGTG	1 cut(s)	824
EaeI	YGGCCR	1 cut(s)	198
Ecl136II	GAGCTC	1 cut(s)	446
Eco130I	CCWWGG	1 cut(s)	916
Eco147I	AGGCCT	1 cut(s)	625
Eco24I	GRGCYC	1 cut(s)	448
Eco31I	GGTCTC	3 cut(s)	122, 586, 987
Eco53kI	GAGCTC	1 cut(s)	446
Eco88I	CYCGRG	1 cut(s)	441
Eco91I	GGTNACC	1 cut(s)	61
EcoICRI	GAGCTC	1 cut(s)	446
EcoO109I	RGGNCCY	1 cut(s)	920
EcoO65I	GGTNACC	1 cut(s)	61
EcoRII	CCWGG	2 cut(s)	316, 625
EcoT14I	CCWWGG	1 cut(s)	916
EcoT22I	ATGCAT	2 cut(s)	6, 1066
EcoT38I	GRGCYC	1 cut(s)	448
ErhI	CCWWGG	1 cut(s)	916
FaeI	CATG	8 cut(s)	335, 570, 598, 652, 1054, 1064, 1068, 1098
FalI	AAGNNNNNCTT	4 cut(s)	804, 836, 843, 875
FaqI	GGGAC	1 cut(s)	450
FatI	CATG	8 cut(s)	331, 566, 594, 648, 1050, 1060, 1064, 1094
FauNDI	CATATG	1 cut(s)	707
Fnu4HI	GCNGC	2 cut(s)	304, 360
FokI	GGATG	2 cut(s)	94, 950
FriOI	GRGCYC	1 cut(s)	448
Fsp4HI	GCNGC	2 cut(s)	304, 360
FspBI	CTAG	3 cut(s)	194, 269, 621
GluI	GCNGC	2 cut(s)	304, 360
GsaI	CCCAGC	2 cut(s)	163, 876
GsuI	CTGGAG	3 cut(s)	559, 568, 794
HaeIII	GGCC	4 cut(s)	200, 625, 877, 921
HapII	CCGG	1 cut(s)	59
HgaI	GACGC	1 cut(s)	1030
Hin1II	CATG	8 cut(s)	335, 570, 598, 652, 1054, 1064, 1068, 1098
HincII	GTYRAC	2 cut(s)	145, 808
HindII	GTYRAC	2 cut(s)	145, 808
HinfI	GANTC	3 cut(s)	273, 769, 1026
HpaI	GTTAAC	1 cut(s)	145
HpaII	CCGG	1 cut(s)	59
HphI	GGTGA	1 cut(s)	55
Hpy166II	GTNNAC	4 cut(s)	145, 250, 323, 808
Hpy188I	TCNGA	2 cut(s)	283, 562
Hpy188III	TCNNGA	8 cut(s)	176, 332, 585, 644, 773, 860, 1018, 1095
Hpy8I	GTNNAC	4 cut(s)	145, 250, 323, 808
HpyAV	CCTTC	3 cut(s)	740, 845, 933
HpyCH4III	ACNGT	4 cut(s)	71, 395, 421, 979
HpyCH4IV	ACGT	1 cut(s)	957
HpyCH4V	TGCA	6 cut(s)	4, 287, 303, 502, 785, 1064
HpyF10VI	GCNNNNNNNGC	2 cut(s)	170, 617
HpyF3I	CTNAG	1 cut(s)	280
HpySE526I	ACGT	1 cut(s)	957
Hsp92II	CATG	8 cut(s)	335, 570, 598, 652, 1054, 1064, 1068, 1098
KspAI	GTTAAC	1 cut(s)	145
Kzo9I	GATC	5 cut(s)	640, 777, 814, 856, 864
LmnI	GCTCC	2 cut(s)	730, 1003
Lsp1109I	GCAGC	2 cut(s)	315, 346
LweI	GCATC	7 cut(s)	13, 88, 116, 274, 334, 378, 972
MaeI	CTAG	3 cut(s)	194, 269, 621
MaeII	ACGT	1 cut(s)	957
MaeIII	GTNAC	1 cut(s)	61
MalI	GATC	5 cut(s)	642, 779, 816, 858, 866
MboI	GATC	5 cut(s)	640, 777, 814, 856, 864
MboII	GAAGA	4 cut(s)	347, 466, 725, 965
MflI	RGATCY	3 cut(s)	814, 856, 864
MhlI	GDGCHC	1 cut(s)	448
MlsI	TGGCCA	1 cut(s)	200
MluCI	AATT	2 cut(s)	602, 931
MluNI	TGGCCA	1 cut(s)	200
MlyI	GAGTC	1 cut(s)	763
MmeI	TCCRAC	2 cut(s)	614, 1012
MnlI	CCTC	2 cut(s)	662, 787
Mox20I	TGGCCA	1 cut(s)	200
Mph1103I	ATGCAT	2 cut(s)	6, 1066
MscI	TGGCCA	1 cut(s)	200
MseI	TTAA	3 cut(s)	144, 228, 264
Msp20I	TGGCCA	1 cut(s)	200
MspA1I	CMGCKG	1 cut(s)	95
MspCI	CTTAAG	1 cut(s)	263
MspI	CCGG	1 cut(s)	59
MspR9I	CCNGG	2 cut(s)	318, 627
MvaI	CCWGG	2 cut(s)	318, 627
MvnI	CGCG	2 cut(s)	177, 1024
MwoI	GCNNNNNNNGC	2 cut(s)	170, 617
NdeI	CATATG	1 cut(s)	707
NdeII	GATC	5 cut(s)	640, 777, 814, 856, 864
NlaIII	CATG	8 cut(s)	335, 570, 598, 652, 1054, 1064, 1068, 1098
NlaIV	GGNNCC	2 cut(s)	520, 726
NmuCI	GTSAC	1 cut(s)	61
NruI	TCGCGA	1 cut(s)	177
NsiI	ATGCAT	2 cut(s)	6, 1066
NspI	RCATGY	2 cut(s)	652, 1068
NspV	TTCGAA	1 cut(s)	926
PagI	TCATGA	2 cut(s)	331, 1094
PceI	AGGCCT	1 cut(s)	625
PfeI	GAWTC	2 cut(s)	273, 1026
PinAI	ACCGGT	1 cut(s)	58
PkrI	GCNGC	2 cut(s)	305, 361
PleI	GAGTC	1 cut(s)	763
PpsI	GAGTC	1 cut(s)	763
PsiI	TTATAA	1 cut(s)	399
Psp124BI	GAGCTC	1 cut(s)	448
Psp6I	CCWGG	2 cut(s)	316, 625
PspEI	GGTNACC	1 cut(s)	61
PspFI	CCCAGC	2 cut(s)	159, 872
PspGI	CCWGG	2 cut(s)	316, 625
PspN4I	GGNNCC	2 cut(s)	520, 726
PspPI	GGNCC	2 cut(s)	875, 920
PsuI	RGATCY	3 cut(s)	814, 856, 864
PvuII	CAGCTG	1 cut(s)	95
RruI	TCGCGA	1 cut(s)	177
RsaI	GTAC	2 cut(s)	293, 890
RsaNI	GTAC	2 cut(s)	292, 889
SacI	GAGCTC	1 cut(s)	448
SaqAI	TTAA	3 cut(s)	144, 228, 264
SatI	GCNGC	2 cut(s)	304, 360
Sau3AI	GATC	5 cut(s)	640, 777, 814, 856, 864
Sau96I	GGNCC	2 cut(s)	875, 920
SchI	GAGTC	1 cut(s)	763
ScrFI	CCNGG	2 cut(s)	318, 627
SduI	GDGCHC	1 cut(s)	448
SfaNI	GCATC	7 cut(s)	13, 88, 116, 274, 334, 378, 972
SfuI	TTCGAA	1 cut(s)	926
SmlI	CTYRAG	3 cut(s)	263, 860, 1016
SmoI	CTYRAG	3 cut(s)	263, 860, 1016
Sse9I	AATT	2 cut(s)	602, 931
SseBI	AGGCCT	1 cut(s)	625
SsiI	CCGC	1 cut(s)	239
SspMI	CTAG	3 cut(s)	194, 269, 621
SstI	GAGCTC	1 cut(s)	448
StuI	AGGCCT	1 cut(s)	625
StyD4I	CCNGG	2 cut(s)	316, 625
StyI	CCWWGG	1 cut(s)	916
TaaI	ACNGT	4 cut(s)	71, 395, 421, 979
TaiI	ACGT	1 cut(s)	960
TaqI	TCGA	2 cut(s)	372, 926
TasI	AATT	2 cut(s)	602, 931
TfiI	GAWTC	2 cut(s)	273, 1026
Tru1I	TTAA	3 cut(s)	144, 228, 264
Tru9I	TTAA	3 cut(s)	144, 228, 264
TscAI	CASTG	1 cut(s)	118
TseFI	GTSAC	1 cut(s)	61
TseI	GCWGC	2 cut(s)	303, 359
Tsp45I	GTSAC	1 cut(s)	61
TspDTI	ATGAA	7 cut(s)	348, 467, 611, 615, 686, 699, 1067
TspRI	CASTG	1 cut(s)	118
Vha464I	CTTAAG	1 cut(s)	263
XapI	RAATTY	1 cut(s)	602
XceI	RCATGY	2 cut(s)	652, 1068
XcmI	CCANNNNNNNNNTGG	1 cut(s)	818
XspI	CTAG	3 cut(s)	194, 269, 621
Zsp2I	ATGCAT	2 cut(s)	6, 1066

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.