Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0018949.1

Orthogroup ID

OG0003741

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1934

Gene Structure 1933 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0018949.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

atgaggaaaaaggtcggtggcaatgctgtgccaacatcaatgattgtaatggcagtgatgctatgctcactcaagttaatgggtgtttctgcttcgcaactcagacgaaatctgcttgccaatggccttggagtgactcctccaatggggtggaatagttggaatcacttcaactgcaaaattgaggagaaaaccataaaagaaactgctgatgctctggtatccactggtctctctaaacttggatataactatgttaacatagatgattgctgggcagaaatagctcgcgatgtaaagggtaatctagtggccaagaaatcggcatttccatcaggcattaaagctcttgcggattatgtccacagcaagggtcttaagctaggaatctactcagatgcagggtactttacttgcagcaaaactatgcctggttcacttggtcatgaagaacaagatgccaatacctttgctgcttggggcatcgattatttgaaatatgataactgttataatgatggctcaaacccaacagttagataccctgtaatgacccgagctctaatgaaagccagccgtcccatattcttctctctctgcgaatggggagatatgcaccctgctttatggggtgccaagttaggaaatagctggagaactacaaaagacatttctgatacatgggaaagtatggtctccagagcagacatgaatgaattt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0009505 GO:0030312 GO:0044464 GO:0048046 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00052 ko00561 ko00600 ko00603 map00052 map00561 map00600 map00603

Pfam Domains

Protein Families

Melibiase_2 Melibiase_2_C

Protein Analysis

240

Amino Acids

26.55

Weight (kDa)

8.65

Isoelectric Point (pI)

24.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003741)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08380 AT5G08380
fragaria_vesca	FvH4_2g12370 FvH4_2g12370 FvH4_2g12370 FvH4_4g37361
malus_domestica	MD13G1000400.v1.1 MD16G1012600.v1.1
prunus_persica	Prupe.1G352200_v2.0.a1 Prupe.1G352200_v2.0.a1
pyrus_communis	pycom13g00040 pycom16g01180 pycom2749g00030
rosa_chinensis	RchiOBHm_Chr4g0447241 RchiOBHm_Chr6g0272391
rosa_laevigata	RLG00000005594 RLG00000013676
rosa_multiflora	Rmu_co8492007.1_g000001 Rmu_sc0018949.1_g000001 Rmu_sc0018950.1_g000001
rosa_roxburghii	Rroxscaffold_5G00387600 Rroxscaffold_7G00196300
rosa_rugosa	Rorug04G0379000 Rorug06G0069000
rosa_samantha	Rh4AG440500 Rh4BG449500 Rh4CG466600 Rh4DG448000 Rh6AG184900 Rh6BG188200 Rh6CG186100 Rh6DG177900
rosa_wichuraiana	Rw4G037690 Rw6G015990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	513
AccB1I	GGYRCC	1 cut(s)	632
AccII	CGCG	1 cut(s)	291
AciI	CCGC	1 cut(s)	353
AcoI	YGGCCR	1 cut(s)	312
AcsI	RAATTY	1 cut(s)	716
AfaI	GTAC	1 cut(s)	407
AfiI	CCNNNNNNNGG	2 cut(s)	146, 370
AflII	CTTAAG	1 cut(s)	377
AgsI	TTSAA	2 cut(s)	172, 496
AjnI	CCWGG	1 cut(s)	430
AluBI	AGCT	5 cut(s)	287, 347, 382, 560, 651
AluI	AGCT	5 cut(s)	287, 347, 382, 560, 651
Alw21I	GWGCWC	1 cut(s)	562
Alw26I	GTCTC	2 cut(s)	236, 700
Ama87I	CYCGRG	1 cut(s)	555
AoxI	GGCC	2 cut(s)	124, 312
ApeKI	GCWGC	2 cut(s)	417, 473
ApoI	RAATTY	1 cut(s)	716
Asp700I	GAANNNNTTC	1 cut(s)	167
AvaI	CYCGRG	1 cut(s)	555
BalI	TGGCCA	1 cut(s)	314
BanI	GGYRCC	1 cut(s)	632
BanII	GRGCYC	1 cut(s)	562
Bbv12I	GWGCWC	1 cut(s)	562
BbvI	GCAGC	2 cut(s)	429, 460
BccI	CCATC	2 cut(s)	340, 512
BceAI	ACGGC	1 cut(s)	561
BciT130I	CCWGG	1 cut(s)	432
BciVI	GTATCC	1 cut(s)	232
BcoDI	GTCTC	2 cut(s)	236, 700
BfaI	CTAG	2 cut(s)	308, 383
BfrI	CTTAAG	1 cut(s)	377
BfuI	GTATCC	1 cut(s)	232
BisI	GCNGC	2 cut(s)	418, 474
BlsI	GCNGC	2 cut(s)	419, 475
Bme1390I	CCNGG	1 cut(s)	432
BmeT110I	CYCGRG	1 cut(s)	555
BmiI	GGNNCC	1 cut(s)	634
BmrFI	CCNGG	1 cut(s)	432
BmsI	GCATC	5 cut(s)	48, 202, 388, 448, 492
BpmI	CTGGAG	2 cut(s)	673, 682
BpuEI	CTTGAG	1 cut(s)	56
Bsa29I	ATCGAT	1 cut(s)	486
BsaI	GGTCTC	2 cut(s)	236, 700
BsaJI	CCNNGG	1 cut(s)	127
Bsc4I	CCNNNNNNNGG	2 cut(s)	146, 370
Bse1I	ACTGG	1 cut(s)	232
Bse3DI	GCAATG	1 cut(s)	28
BseBI	CCWGG	1 cut(s)	432
BseCI	ATCGAT	1 cut(s)	486
BseDI	CCNNGG	1 cut(s)	127
BseLI	CCNNNNNNNGG	2 cut(s)	146, 370
BseMI	GCAATG	1 cut(s)	28
BseMII	CTCAG	2 cut(s)	115, 408
BseNI	ACTGG	1 cut(s)	232
BseRI	GAGGAG	2 cut(s)	129, 200
BseXI	GCAGC	2 cut(s)	429, 460
BseYI	CCCAGC	1 cut(s)	273
Bsh1236I	CGCG	1 cut(s)	291
BshFI	GGCC	2 cut(s)	126, 314
BshNI	GGYRCC	1 cut(s)	632
BshVI	ATCGAT	1 cut(s)	486
BsiHKAI	GWGCWC	1 cut(s)	562
BsiHKCI	CYCGRG	1 cut(s)	555
BslFI	GGGAC	1 cut(s)	564
BslI	CCNNNNNNNGG	2 cut(s)	146, 370
BsmAI	GTCTC	2 cut(s)	236, 700
BsmFI	GGGAC	1 cut(s)	564
BsnI	GGCC	2 cut(s)	126, 314
Bso31I	GGTCTC	2 cut(s)	236, 700
BsoBI	CYCGRG	1 cut(s)	555
Bsp1286I	GDGCHC	1 cut(s)	562
Bsp68I	TCGCGA	1 cut(s)	291
BspACI	CCGC	1 cut(s)	353
BspANI	GGCC	2 cut(s)	126, 314
BspCNI	CTCAG	2 cut(s)	114, 407
BspDI	ATCGAT	1 cut(s)	486
BspFNI	CGCG	1 cut(s)	291
BspHI	TCATGA	1 cut(s)	445
BspLI	GGNNCC	1 cut(s)	634
BspT107I	GGYRCC	1 cut(s)	632
BspTI	CTTAAG	1 cut(s)	377
BspTNI	GGTCTC	2 cut(s)	236, 700
BsrDI	GCAATG	1 cut(s)	28
BsrI	ACTGG	1 cut(s)	232
BssECI	CCNNGG	1 cut(s)	127
BssT1I	CCWWGG	1 cut(s)	127
Bst2UI	CCWGG	1 cut(s)	432
Bst4CI	ACNGT	2 cut(s)	509, 535
BstAFI	CTTAAG	1 cut(s)	377
BstC8I	GCNNGC	3 cut(s)	117, 289, 574
BstDEI	CTNAG	2 cut(s)	101, 394
BstFNI	CGCG	1 cut(s)	291
BstMAI	GTCTC	2 cut(s)	236, 700
BstMWI	GCNNNNNNNGC	1 cut(s)	284
BstNI	CCWGG	1 cut(s)	432
BstSCI	CCNGG	1 cut(s)	430
BstUI	CGCG	1 cut(s)	291
BstV1I	GCAGC	2 cut(s)	429, 460
BstXI	CCANNNNNNTGG	1 cut(s)	150
Bsu15I	ATCGAT	1 cut(s)	486
BsuI	GTATCC	1 cut(s)	232
BsuRI	GGCC	2 cut(s)	126, 314
BsuTUI	ATCGAT	1 cut(s)	486
BtgZI	GCGATG	1 cut(s)	306
BtsI	GCAGTG	1 cut(s)	60
BtsIMutI	CAGTG	2 cut(s)	60, 225
BtuMI	TCGCGA	1 cut(s)	291
Cac8I	GCNNGC	3 cut(s)	117, 289, 574
CciI	TCATGA	1 cut(s)	445
ClaI	ATCGAT	1 cut(s)	486
Csp6I	GTAC	1 cut(s)	406
CviAII	CATG	3 cut(s)	446, 681, 709
CviQI	GTAC	1 cut(s)	406
DdeI	CTNAG	2 cut(s)	101, 394
EaeI	YGGCCR	1 cut(s)	312
Ecl136II	GAGCTC	1 cut(s)	560
Eco130I	CCWWGG	1 cut(s)	127
Eco24I	GRGCYC	1 cut(s)	562
Eco31I	GGTCTC	2 cut(s)	236, 700
Eco53kI	GAGCTC	1 cut(s)	560
Eco88I	CYCGRG	1 cut(s)	555
EcoICRI	GAGCTC	1 cut(s)	560
EcoRII	CCWGG	1 cut(s)	430
EcoT14I	CCWWGG	1 cut(s)	127
EcoT38I	GRGCYC	1 cut(s)	562
ErhI	CCWWGG	1 cut(s)	127
FaeI	CATG	3 cut(s)	449, 684, 712
FaqI	GGGAC	1 cut(s)	564
FatI	CATG	3 cut(s)	445, 680, 708
Fnu4HI	GCNGC	2 cut(s)	418, 474
FriOI	GRGCYC	1 cut(s)	562
Fsp4HI	GCNGC	2 cut(s)	418, 474
FspBI	CTAG	2 cut(s)	308, 383
GluI	GCNGC	2 cut(s)	418, 474
GsaI	CCCAGC	1 cut(s)	277
GsuI	CTGGAG	2 cut(s)	673, 682
HaeIII	GGCC	2 cut(s)	126, 314
Hin1II	CATG	3 cut(s)	449, 684, 712
HincII	GTYRAC	1 cut(s)	259
HindII	GTYRAC	1 cut(s)	259
HinfI	GANTC	3 cut(s)	136, 163, 387
HpaI	GTTAAC	1 cut(s)	259
Hpy166II	GTNNAC	3 cut(s)	259, 364, 437
Hpy188I	TCNGA	3 cut(s)	104, 397, 676
Hpy188III	TCNNGA	3 cut(s)	290, 446, 699
Hpy8I	GTNNAC	3 cut(s)	259, 364, 437
HpyCH4III	ACNGT	2 cut(s)	509, 535
HpyCH4V	TGCA	4 cut(s)	177, 401, 417, 616
HpyF10VI	GCNNNNNNNGC	1 cut(s)	284
HpyF3I	CTNAG	2 cut(s)	101, 394
Hsp92II	CATG	3 cut(s)	449, 684, 712
KspAI	GTTAAC	1 cut(s)	259
Lsp1109I	GCAGC	2 cut(s)	429, 460
LweI	GCATC	5 cut(s)	48, 202, 388, 448, 492
MaeI	CTAG	2 cut(s)	308, 383
MaeIII	GTNAC	1 cut(s)	133
MboII	GAAGA	2 cut(s)	461, 580
MhlI	GDGCHC	1 cut(s)	562
MlsI	TGGCCA	1 cut(s)	314
MluCI	AATT	2 cut(s)	180, 716
MluNI	TGGCCA	1 cut(s)	314
MlyI	GAGTC	1 cut(s)	130
MmeI	TCCRAC	1 cut(s)	140
MnlI	CCTC	2 cut(s)	150, 178
Mox20I	TGGCCA	1 cut(s)	314
MroXI	GAANNNNTTC	1 cut(s)	167
MscI	TGGCCA	1 cut(s)	314
MseI	TTAA	4 cut(s)	77, 258, 342, 378
Msp20I	TGGCCA	1 cut(s)	314
MspCI	CTTAAG	1 cut(s)	377
MspR9I	CCNGG	1 cut(s)	432
MvaI	CCWGG	1 cut(s)	432
MvnI	CGCG	1 cut(s)	291
MwoI	GCNNNNNNNGC	1 cut(s)	284
NlaIII	CATG	3 cut(s)	449, 684, 712
NlaIV	GGNNCC	1 cut(s)	634
NmuCI	GTSAC	1 cut(s)	133
NruI	TCGCGA	1 cut(s)	291
PagI	TCATGA	1 cut(s)	445
PdmI	GAANNNNTTC	1 cut(s)	167
PfeI	GAWTC	2 cut(s)	163, 387
PkrI	GCNGC	2 cut(s)	419, 475
PleI	GAGTC	1 cut(s)	130
PpsI	GAGTC	1 cut(s)	130
PsiI	TTATAA	1 cut(s)	513
Psp124BI	GAGCTC	1 cut(s)	562
Psp6I	CCWGG	1 cut(s)	430
PspFI	CCCAGC	1 cut(s)	273
PspGI	CCWGG	1 cut(s)	430
PspN4I	GGNNCC	1 cut(s)	634
RruI	TCGCGA	1 cut(s)	291
RsaI	GTAC	1 cut(s)	407
RsaNI	GTAC	1 cut(s)	406
SacI	GAGCTC	1 cut(s)	562
SaqAI	TTAA	4 cut(s)	77, 258, 342, 378
SatI	GCNGC	2 cut(s)	418, 474
SchI	GAGTC	1 cut(s)	130
ScrFI	CCNGG	1 cut(s)	432
SduI	GDGCHC	1 cut(s)	562
SetI	ASST	7 cut(s)	15, 289, 349, 384, 470, 562, 653
SfaNI	GCATC	5 cut(s)	48, 202, 388, 448, 492
SmlI	CTYRAG	2 cut(s)	71, 377
SmoI	CTYRAG	2 cut(s)	71, 377
Sse9I	AATT	2 cut(s)	180, 716
SsiI	CCGC	1 cut(s)	353
SspMI	CTAG	2 cut(s)	308, 383
SstI	GAGCTC	1 cut(s)	562
StyD4I	CCNGG	1 cut(s)	430
StyI	CCWWGG	1 cut(s)	127
TaaI	ACNGT	2 cut(s)	509, 535
TaqI	TCGA	1 cut(s)	486
TasI	AATT	2 cut(s)	180, 716
TfiI	GAWTC	2 cut(s)	163, 387
Tru1I	TTAA	4 cut(s)	77, 258, 342, 378
Tru9I	TTAA	4 cut(s)	77, 258, 342, 378
TscAI	CASTG	2 cut(s)	60, 232
TseFI	GTSAC	1 cut(s)	133
TseI	GCWGC	2 cut(s)	417, 473
Tsp45I	GTSAC	1 cut(s)	133
TspDTI	ATGAA	2 cut(s)	462, 581
TspRI	CASTG	2 cut(s)	60, 232
Vha464I	CTTAAG	1 cut(s)	377
XapI	RAATTY	1 cut(s)	716
XmnI	GAANNNNTTC	1 cut(s)	167
XspI	CTAG	2 cut(s)	308, 383

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.