Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

tig00002749

Orthogroup ID

OG0003741

Physical Location & Seq

Genomic Coordinates Forward (+)

18811 .. 20557

Gene Structure 1747 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom2749g00030.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGCCGTACTTCACTTACAGCAAGACCATGCCTGGTTCACTTGGCCACGAAGAACAAGATGCCAAAACATTTGCTGCTTGGGGAATTGATTATTTGAAGTATGATAACTGTAATAATGATGACTCCAAGCCAACTGTTAGGTACCCTGTAATGACCCAAGCTCTAATGAAAGCAGGTTGTCTTATATTCTTTTCACTTTGTGAATGGGGAGATATGCACCCTGCTCAATGGGGTGCTAAAGAAGGAAATAGCTGGAGAACTAATAATGACATTTCTGATACATGGGAAAGTATGCTCTCTAGAGCAGACATGAATGAAGTTTATGCTGATTTTGCCAGACCTGGTGGCTGGAATGATCCCGACATGTTAGAAGTGGGGAATGGAGGAATGATAAAAGATGAATATGTAGTCCATTTTAGCATATGGACCATTTCTAAGGCTCCCCTTCTTCTTGGTTGCGATGTGAGGAATATCACAAAAGATACCATGGAGATCATTGAAAATAAAGAGGTTATCTCTGTAAACCAAGGTCCACTTGGCGTCCAAGCTAAAAAGGTCAGATCAGAAGGGGATCTTGAGATTTGGACGGGGCCCTTGTCAGGATACAGAGTAGTTTTACTCCTTATCAACCGAGGACCTTGGAAAACTTCGGTCACAGCTCACTGGGATGACATTGAGATCCCCACAGACGGTGTTGTTGAAGCAAGAGACCTCTGGGAGCACAAGACATTGAAGGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0009505 GO:0030312 GO:0044464 GO:0048046 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00052 ko00561 ko00600 ko00603 map00052 map00561 map00600 map00603

Pfam Domains

Protein Families

Melibiase_2 Melibiase_2_C

Protein Analysis

247

Amino Acids

27.8

Weight (kDa)

4.85

Isoelectric Point (pI)

28.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003741)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08380 AT5G08380
fragaria_vesca	FvH4_2g12370 FvH4_2g12370 FvH4_2g12370 FvH4_4g37361
malus_domestica	MD13G1000400.v1.1 MD16G1012600.v1.1
prunus_persica	Prupe.1G352200_v2.0.a1 Prupe.1G352200_v2.0.a1
pyrus_communis	pycom13g00040 pycom16g01180 pycom2749g00030
rosa_chinensis	RchiOBHm_Chr4g0447241 RchiOBHm_Chr6g0272391
rosa_laevigata	RLG00000005594 RLG00000013676
rosa_multiflora	Rmu_co8492007.1_g000001 Rmu_sc0018949.1_g000001 Rmu_sc0018950.1_g000001
rosa_roxburghii	Rroxscaffold_5G00387600 Rroxscaffold_7G00196300
rosa_rugosa	Rorug04G0379000 Rorug06G0069000
rosa_samantha	Rh4AG440500 Rh4BG449500 Rh4CG466600 Rh4DG448000 Rh6AG184900 Rh6BG188200 Rh6CG186100 Rh6DG177900
rosa_wichuraiana	Rw4G037690 Rw6G015990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	164
Acc65I	GGTACC	1 cut(s)	141
AccB1I	GGYRCC	1 cut(s)	141
AclWI	GGATC	3 cut(s)	350, 579, 673
AcoI	YGGCCR	1 cut(s)	43
AcyI	GRCGYC	1 cut(s)	540
AdeI	CACNNNGTG	1 cut(s)	200
AfaI	GTAC	2 cut(s)	8, 143
AfiI	CCNNNNNNNGG	2 cut(s)	599, 689
AflIII	ACRYGT	1 cut(s)	363
AgsI	TTSAA	4 cut(s)	97, 500, 701, 733
AjnI	CCWGG	2 cut(s)	31, 340
AluBI	AGCT	4 cut(s)	161, 252, 548, 659
AluI	AGCT	4 cut(s)	161, 252, 548, 659
Alw21I	GWGCWC	1 cut(s)	723
Alw26I	GTCTC	1 cut(s)	702
AlwI	GGATC	3 cut(s)	350, 579, 673
AoxI	GGCC	2 cut(s)	43, 590
ApaI	GGGCCC	1 cut(s)	594
ApeKI	GCWGC	1 cut(s)	74
Asp718I	GGTACC	1 cut(s)	141
AspS9I	GGNCC	5 cut(s)	426, 530, 590, 591, 635
AvaII	GGWCC	3 cut(s)	426, 530, 635
BaeGI	GKGCMC	1 cut(s)	594
BalI	TGGCCA	1 cut(s)	45
BanI	GGYRCC	1 cut(s)	141
BanII	GRGCYC	1 cut(s)	594
Bbv12I	GWGCWC	1 cut(s)	723
BbvI	GCAGC	1 cut(s)	61
BciT130I	CCWGG	2 cut(s)	33, 342
BciVI	GTATCC	1 cut(s)	596
BcoDI	GTCTC	1 cut(s)	702
BfaI	CTAG	1 cut(s)	300
BfuAI	ACCTGC	1 cut(s)	164
BfuI	GTATCC	1 cut(s)	596
BisI	GCNGC	1 cut(s)	75
BlsI	GCNGC	1 cut(s)	76
Bme1390I	CCNGG	2 cut(s)	33, 342
Bme18I	GGWCC	3 cut(s)	426, 530, 635
BmgT120I	GGNCC	5 cut(s)	426, 530, 590, 591, 635
BmiI	GGNNCC	4 cut(s)	143, 441, 591, 592
BmrFI	CCNGG	2 cut(s)	33, 342
BmrI	ACTGGG	1 cut(s)	673
BmsI	GCATC	1 cut(s)	49
BmuI	ACTGGG	1 cut(s)	673
BplI	GAGNNNNNCTC	2 cut(s)	500, 532
BpmI	CTGGAG	1 cut(s)	274
BpuEI	CTTGAG	1 cut(s)	596
BsaHI	GRCGYC	1 cut(s)	540
BsaI	GGTCTC	1 cut(s)	702
BsaJI	CCNNGG	4 cut(s)	486, 526, 631, 638
Bsc4I	CCNNNNNNNGG	2 cut(s)	599, 689
Bse1I	ACTGG	1 cut(s)	668
BseBI	CCWGG	2 cut(s)	33, 342
BseDI	CCNNGG	4 cut(s)	486, 526, 631, 638
BseGI	GGATG	1 cut(s)	673
BseLI	CCNNNNNNNGG	2 cut(s)	599, 689
BseNI	ACTGG	1 cut(s)	668
BseSI	GKGCMC	1 cut(s)	594
BseXI	GCAGC	1 cut(s)	61
BshFI	GGCC	2 cut(s)	45, 592
BshNI	GGYRCC	1 cut(s)	141
BsiHKAI	GWGCWC	1 cut(s)	723
BslI	CCNNNNNNNGG	2 cut(s)	599, 689
BsmAI	GTCTC	1 cut(s)	702
BsnI	GGCC	2 cut(s)	45, 592
Bso31I	GGTCTC	1 cut(s)	702
Bsp120I	GGGCCC	1 cut(s)	590
Bsp1286I	GDGCHC	2 cut(s)	594, 723
Bsp143I	GATC	5 cut(s)	355, 492, 560, 571, 678
Bsp19I	CCATGG	1 cut(s)	486
BspANI	GGCC	2 cut(s)	45, 592
BspLI	GGNNCC	4 cut(s)	143, 441, 591, 592
BspMI	ACCTGC	1 cut(s)	164
BspPI	GGATC	3 cut(s)	350, 579, 673
BspT107I	GGYRCC	1 cut(s)	141
BspTNI	GGTCTC	1 cut(s)	702
BsrI	ACTGG	1 cut(s)	668
BssECI	CCNNGG	4 cut(s)	486, 526, 631, 638
BssMI	GATC	5 cut(s)	355, 492, 560, 571, 678
BssNI	GRCGYC	1 cut(s)	540
BssT1I	CCWWGG	3 cut(s)	486, 526, 638
Bst2UI	CCWGG	2 cut(s)	33, 342
Bst4CI	ACNGT	3 cut(s)	110, 136, 692
BstACI	GRCGYC	1 cut(s)	540
BstDEI	CTNAG	1 cut(s)	435
BstDSI	CCRYGG	1 cut(s)	486
BstF5I	GGATG	1 cut(s)	673
BstKTI	GATC	5 cut(s)	358, 495, 563, 574, 681
BstMAI	GTCTC	1 cut(s)	702
BstMBI	GATC	5 cut(s)	355, 492, 560, 571, 678
BstMWI	GCNNNNNNNGC	1 cut(s)	332
BstNI	CCWGG	2 cut(s)	33, 342
BstNSI	RCATGY	1 cut(s)	367
BstSCI	CCNGG	2 cut(s)	31, 340
BstSLI	GKGCMC	1 cut(s)	594
BstV1I	GCAGC	1 cut(s)	61
BstX2I	RGATCY	2 cut(s)	571, 678
BstYI	RGATCY	2 cut(s)	571, 678
BsuI	GTATCC	1 cut(s)	596
BsuRI	GGCC	2 cut(s)	45, 592
BtgI	CCRYGG	1 cut(s)	486
BtgZI	GCGATG	1 cut(s)	474
BtsCI	GGATG	1 cut(s)	673
BtsIMutI	CAGTG	1 cut(s)	661
BveI	ACCTGC	1 cut(s)	164
Cfr13I	GGNCC	5 cut(s)	426, 530, 590, 591, 635
CseI	GACGC	1 cut(s)	529
CsiI	ACCWGGT	1 cut(s)	340
Csp6I	GTAC	2 cut(s)	7, 142
CviAII	CATG	6 cut(s)	28, 282, 310, 364, 487, 738
CviJI	RGCY	9 cut(s)	45, 130, 161, 252, 348, 440, 548, 592, 659
CviKI_1	RGCY	9 cut(s)	45, 130, 161, 252, 348, 440, 548, 592, 659
CviQI	GTAC	2 cut(s)	7, 142
DdeI	CTNAG	1 cut(s)	435
DpnI	GATC	5 cut(s)	357, 494, 562, 573, 680
DpnII	GATC	5 cut(s)	355, 492, 560, 571, 678
DraIII	CACNNNGTG	1 cut(s)	200
EaeI	YGGCCR	1 cut(s)	43
Eco130I	CCWWGG	3 cut(s)	486, 526, 638
Eco24I	GRGCYC	1 cut(s)	594
Eco31I	GGTCTC	1 cut(s)	702
Eco47I	GGWCC	3 cut(s)	426, 530, 635
EcoO109I	RGGNCCY	3 cut(s)	590, 591, 635
EcoRII	CCWGG	2 cut(s)	31, 340
EcoT14I	CCWWGG	3 cut(s)	486, 526, 638
EcoT38I	GRGCYC	1 cut(s)	594
ErhI	CCWWGG	3 cut(s)	486, 526, 638
FaeI	CATG	6 cut(s)	31, 285, 313, 367, 490, 741
FalI	AAGNNNNNCTT	4 cut(s)	519, 551, 558, 590
FatI	CATG	6 cut(s)	27, 281, 309, 363, 486, 737
FauNDI	CATATG	1 cut(s)	422
Fnu4HI	GCNGC	1 cut(s)	75
FokI	GGATG	1 cut(s)	680
FriOI	GRGCYC	1 cut(s)	594
Fsp4HI	GCNGC	1 cut(s)	75
FspBI	CTAG	1 cut(s)	300
GluI	GCNGC	1 cut(s)	75
GsuI	CTGGAG	1 cut(s)	274
HaeIII	GGCC	2 cut(s)	45, 592
HgaI	GACGC	1 cut(s)	529
Hin1I	GRCGYC	1 cut(s)	540
Hin1II	CATG	6 cut(s)	31, 285, 313, 367, 490, 741
HinfI	GANTC	1 cut(s)	122
Hpy166II	GTNNAC	3 cut(s)	38, 523, 533
Hpy188I	TCNGA	3 cut(s)	277, 560, 565
Hpy188III	TCNNGA	4 cut(s)	300, 359, 575, 600
Hpy8I	GTNNAC	3 cut(s)	38, 523, 533
HpyAV	CCTTC	4 cut(s)	236, 455, 560, 727
HpyCH4III	ACNGT	3 cut(s)	110, 136, 692
HpyCH4V	TGCA	1 cut(s)	217
HpyF10VI	GCNNNNNNNGC	1 cut(s)	332
HpyF3I	CTNAG	1 cut(s)	435
Hsp92I	GRCGYC	1 cut(s)	540
Hsp92II	CATG	6 cut(s)	31, 285, 313, 367, 490, 741
KpnI	GGTACC	1 cut(s)	145
Kzo9I	GATC	5 cut(s)	355, 492, 560, 571, 678
LmnI	GCTCC	2 cut(s)	445, 718
Lsp1109I	GCAGC	1 cut(s)	61
LweI	GCATC	1 cut(s)	49
MabI	ACCWGGT	1 cut(s)	340
MaeI	CTAG	1 cut(s)	300
MaeIII	GTNAC	1 cut(s)	652
MalI	GATC	5 cut(s)	357, 494, 562, 573, 680
MboI	GATC	5 cut(s)	355, 492, 560, 571, 678
MboII	GAAGA	2 cut(s)	62, 440
MflI	RGATCY	2 cut(s)	571, 678
MhlI	GDGCHC	2 cut(s)	594, 723
MlsI	TGGCCA	1 cut(s)	45
MluCI	AATT	1 cut(s)	84
MluNI	TGGCCA	1 cut(s)	45
MlyI	GAGTC	1 cut(s)	116
MnlI	CCTC	5 cut(s)	377, 459, 502, 626, 722
Mox20I	TGGCCA	1 cut(s)	45
MscI	TGGCCA	1 cut(s)	45
MslI	CAYNNNNRTG	1 cut(s)	666
Msp20I	TGGCCA	1 cut(s)	45
MspR9I	CCNGG	2 cut(s)	33, 342
MvaI	CCWGG	2 cut(s)	33, 342
MwoI	GCNNNNNNNGC	1 cut(s)	332
NcoI	CCATGG	1 cut(s)	486
NdeI	CATATG	1 cut(s)	422
NdeII	GATC	5 cut(s)	355, 492, 560, 571, 678
NlaIII	CATG	6 cut(s)	31, 285, 313, 367, 490, 741
NlaIV	GGNNCC	4 cut(s)	143, 441, 591, 592
NmuCI	GTSAC	1 cut(s)	652
NspI	RCATGY	1 cut(s)	367
PciI	ACATGT	1 cut(s)	363
PkrI	GCNGC	1 cut(s)	76
PleI	GAGTC	1 cut(s)	116
PpsI	GAGTC	1 cut(s)	116
PpuMI	RGGWCCY	1 cut(s)	635
PscI	ACATGT	1 cut(s)	363
Psp5II	RGGWCCY	1 cut(s)	635
Psp6I	CCWGG	2 cut(s)	31, 340
PspGI	CCWGG	2 cut(s)	31, 340
PspN4I	GGNNCC	4 cut(s)	143, 441, 591, 592
PspOMI	GGGCCC	1 cut(s)	590
PspPI	GGNCC	5 cut(s)	426, 530, 590, 591, 635
PspPPI	RGGWCCY	1 cut(s)	635
PsuI	RGATCY	2 cut(s)	571, 678
RsaI	GTAC	2 cut(s)	8, 143
RsaNI	GTAC	2 cut(s)	7, 142
RseI	CAYNNNNRTG	1 cut(s)	666
SatI	GCNGC	1 cut(s)	75
Sau3AI	GATC	5 cut(s)	355, 492, 560, 571, 678
Sau96I	GGNCC	5 cut(s)	426, 530, 590, 591, 635
SchI	GAGTC	1 cut(s)	116
ScrFI	CCNGG	2 cut(s)	33, 342
SduI	GDGCHC	2 cut(s)	594, 723
SexAI	ACCWGGT	1 cut(s)	340
SfaNI	GCATC	1 cut(s)	49
SinI	GGWCC	3 cut(s)	426, 530, 635
SmiMI	CAYNNNNRTG	1 cut(s)	666
SmlI	CTYRAG	1 cut(s)	575
SmoI	CTYRAG	1 cut(s)	575
Sse9I	AATT	1 cut(s)	84
SspMI	CTAG	1 cut(s)	300
StyD4I	CCNGG	2 cut(s)	31, 340
StyI	CCWWGG	3 cut(s)	486, 526, 638
TaaI	ACNGT	3 cut(s)	110, 136, 692
TaqII	GACCGA	1 cut(s)	640
TasI	AATT	1 cut(s)	84
TscAI	CASTG	1 cut(s)	668
TseFI	GTSAC	1 cut(s)	652
TseI	GCWGC	1 cut(s)	74
Tsp45I	GTSAC	1 cut(s)	652
TspDTI	ATGAA	4 cut(s)	182, 326, 330, 414
TspRI	CASTG	1 cut(s)	668
VpaK11BI	GGWCC	3 cut(s)	426, 530, 635
XbaI	TCTAGA	1 cut(s)	299
XceI	RCATGY	1 cut(s)	367
XcmI	CCANNNNNNNNNTGG	1 cut(s)	533
XspI	CTAG	1 cut(s)	300

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.