pycom13g00040

Alpha-galactosidase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
Physical Location & Seq
Reverse (-)
31071 .. 34005
2935 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g00040.6

Sequence Viewer

Length: 1152 bp
ATGGGGAAGAAGGATGGTGGTGATTGTGATCATGGTACAATAGTGATGATTGTGATGTTGTTGATAATGGCAATGGGTTTGTCGTTTGCTTCTTCAGCTTCAGCTGCGGCAGCTTCTTCGCAACTCAGACGAAATCTGCTTGCCAACGGACTTGGACTCACTCCTCCCATGGGGTGGAATAGTTGGAATCACTTCAACTGCAAAATCGATGAGAAAATCATCAAAGCAACCGCTGATGCACTGGTTTCCACTGGTCTCTCTAAACTTGGATATACCTATGTTAACATAGATGATTGCTGGGCCGAAATTGCTCGTGATCACAAGCGCAATCTAGTGCCCAAGAAATCAACATTTCCATCAGGCATTAAAGCTCTTGCGGATTATGTTCACAGCAAGGGTCTTAAGCTAGGAATTTACTCAGATGCAGGGTACTTCACTTGCAGCAAAACCATGCCTGGTTCACTTGGCCACGAAGAGCAAGATGCCAAAACATTTGCTGCTTGGGGAATTGATTATTTGAAGTATGATAACTGTAATAATGATGACTCCAAGCCAACTGTTAGGTACCCTGTAATGACCCGAGCTCTGATGAAATCAGGTCGTCCCATATTCTTTTCGCTTTGTGAATGTATGATCTCTAGAGCTGACATGAATGAAGTTTATGCTGAATTTGCCGGACCTGGTGGCTGGAATGATCCCGACATGTTAGAAGTGGGGAATGGAGGAATGACAAAAGATGAATATGTAGTCCATTTTAGCGTATGGGCCATTTCTAAGGCTCCCCTTCTTCTTGGCTGCGATGTGAGGAATATCACAAAAGAGAACATGGAGATCATTGCAAATAAAGAGGTTATCTCTGTAAACCAAGATCCACTTGGTGTCCAAGCTAAAAAGGTCAGATCAGAAGGGGATCTGGAGATTTGGGCGGGGCCCCTTTCAGGATACAGAGTAGCTCTACTCCTTGTCAACCGAGGCCCTTGGCGAACTGCAGTCACAGCTCACTGGGATGACATTGAGATCCCCACAAACAGTGTTGTTGAAGCAAGAGACCTCTGGGAGCACAAGACATTGAAGGCACGATTTGTCGGAAACTTGACAGCCACTGTGGACTCTCATGCGTGCAAAATGTATGTTTTGAAGCCAGTGTCTTAA

Protein Analysis

384

Amino Acids

42.09

Weight (kDa)

6.75

Isoelectric Point (pI)

31.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 564
AccB1I GGYRCC 1 cut(s) 564
AccB7I CCANNNNNTGG 1 cut(s) 174
AciI CCGC 4 cut(s) 107, 231, 377, 926
AclWI GGATC 4 cut(s) 689, 863, 918, 1012
AcoI YGGCCR 1 cut(s) 466
AcsI RAATTY 2 cut(s) 411, 668
AcuI CTGAAG 2 cut(s) 78, 84
AdeI CACNNNGTG 1 cut(s) 878
AfaI GTAC 3 cut(s) 37, 431, 566
AfiI CCNNNNNNNGG 3 cut(s) 170, 174, 938
AflII CTTAAG 1 cut(s) 401
AflIII ACRYGT 1 cut(s) 702
AgsI TTSAA 5 cut(s) 196, 520, 1040, 1072, 1138
AjnI CCWGG 2 cut(s) 454, 679
Alw21I GWGCWC 2 cut(s) 586, 1062
Alw26I GTCTC 2 cut(s) 260, 1041
AlwI GGATC 4 cut(s) 689, 863, 918, 1012
AlwNI CAGNNNCTG 1 cut(s) 1103
Ama87I CYCGRG 1 cut(s) 579
AoxI GGCC 5 cut(s) 300, 466, 765, 929, 973
ApaI GGGCCC 1 cut(s) 933
ApeKI GCWGC 5 cut(s) 104, 110, 441, 497, 795
ApoI RAATTY 2 cut(s) 411, 668
Asp700I GAANNNNTTC 1 cut(s) 191
Asp718I GGTACC 1 cut(s) 564
AspLEI GCGC 1 cut(s) 327
AspS9I GGNCC 6 cut(s) 300, 677, 765, 929, 930, 974
AsuHPI GGTGA 1 cut(s) 32
AvaI CYCGRG 1 cut(s) 579
AvaII GGWCC 1 cut(s) 677
BaeGI GKGCMC 2 cut(s) 339, 933
BaeI ACNNNNGTAYC 2 cut(s) 27, 60
BalI TGGCCA 1 cut(s) 468
BanI GGYRCC 1 cut(s) 564
BanII GRGCYC 2 cut(s) 586, 933
BauI CACGAG 1 cut(s) 312
Bbv12I GWGCWC 2 cut(s) 586, 1062
BbvI GCAGC 5 cut(s) 91, 122, 453, 484, 782
BccI CCATC 2 cut(s) 8, 364
BcgI CGANNNNNNTGC 2 cut(s) 99, 133
BciT130I CCWGG 2 cut(s) 456, 681
BciVI GTATCC 1 cut(s) 935
BclI TGATCA 2 cut(s) 28, 316
BcoDI GTCTC 2 cut(s) 260, 1041
BfaI CTAG 3 cut(s) 332, 407, 639
BfmI CTRYAG 1 cut(s) 987
BfrI CTTAAG 1 cut(s) 401
BfuI GTATCC 1 cut(s) 935
BisI GCNGC 6 cut(s) 105, 108, 111, 442, 498, 796
BlsI GCNGC 6 cut(s) 106, 109, 112, 443, 499, 797
Bme1390I CCNGG 2 cut(s) 456, 681
Bme18I GGWCC 1 cut(s) 677
BmeT110I CYCGRG 1 cut(s) 579
BmgT120I GGNCC 6 cut(s) 300, 677, 765, 929, 930, 974
BmiI GGNNCC 5 cut(s) 566, 780, 930, 931, 932
BmrFI CCNGG 2 cut(s) 456, 681
BmrI ACTGGG 1 cut(s) 1012
BmsI GCATC 3 cut(s) 226, 412, 472
BmuI ACTGGG 1 cut(s) 1012
BplI GAGNNNNNCTC 2 cut(s) 839, 871
BpmI CTGGAG 1 cut(s) 935
Bsa29I ATCGAT 1 cut(s) 207
BsaBI GATNNNNATC 1 cut(s) 27
BsaI GGTCTC 2 cut(s) 260, 1041
BsaJI CCNNGG 3 cut(s) 168, 970, 977
Bsc4I CCNNNNNNNGG 3 cut(s) 170, 174, 938
Bse1I ACTGG 4 cut(s) 246, 256, 1007, 1142
Bse3DI GCAATG 2 cut(s) 78, 834
Bse8I GATNNNNATC 1 cut(s) 27
BseBI CCWGG 2 cut(s) 456, 681
BseCI ATCGAT 1 cut(s) 207
BseDI CCNNGG 3 cut(s) 168, 970, 977
BseGI GGATG 2 cut(s) 19, 1012
BseJI GATNNNNATC 1 cut(s) 27
BseLI CCNNNNNNNGG 3 cut(s) 170, 174, 938
BseMI GCAATG 2 cut(s) 78, 834
BseMII CTCAG 2 cut(s) 139, 432
BseNI ACTGG 4 cut(s) 246, 256, 1007, 1142
BseRI GAGGAG 1 cut(s) 153
BseSI GKGCMC 2 cut(s) 339, 933
BseXI GCAGC 5 cut(s) 91, 122, 453, 484, 782
BseYI CCCAGC 1 cut(s) 297
BshFI GGCC 5 cut(s) 302, 468, 767, 931, 975
BshNI GGYRCC 1 cut(s) 564
BshVI ATCGAT 1 cut(s) 207
BsiHKAI GWGCWC 2 cut(s) 586, 1062
BsiHKCI CYCGRG 1 cut(s) 579
BsiSI CCGG 1 cut(s) 675
BslFI GGGAC 1 cut(s) 588
BslI CCNNNNNNNGG 3 cut(s) 170, 174, 938
BsmAI GTCTC 2 cut(s) 260, 1041
BsmFI GGGAC 1 cut(s) 588
BsnI GGCC 5 cut(s) 302, 468, 767, 931, 975
Bso31I GGTCTC 2 cut(s) 260, 1041
BsoBI CYCGRG 1 cut(s) 579
Bsp120I GGGCCC 1 cut(s) 929
Bsp1286I GDGCHC 4 cut(s) 339, 586, 933, 1062
Bsp143I GATC 9 cut(s) 28, 316, 633, 694, 831, 868, 899, 910, 1017
Bsp19I CCATGG 1 cut(s) 168
BspACI CCGC 4 cut(s) 107, 231, 377, 926
BspANI GGCC 5 cut(s) 302, 468, 767, 931, 975
BspCNI CTCAG 2 cut(s) 138, 431
BspDI ATCGAT 1 cut(s) 207
BspLI GGNNCC 5 cut(s) 566, 780, 930, 931, 932
BspMAI CTGCAG 1 cut(s) 991
BspPI GGATC 4 cut(s) 689, 863, 918, 1012
BspQI GCTCTTC 1 cut(s) 468
BspT107I GGYRCC 1 cut(s) 564
BspTI CTTAAG 1 cut(s) 401
BspTNI GGTCTC 2 cut(s) 260, 1041
BsrDI GCAATG 2 cut(s) 78, 834
BsrI ACTGG 4 cut(s) 246, 256, 1007, 1142
BssECI CCNNGG 3 cut(s) 168, 970, 977
BssMI GATC 9 cut(s) 28, 316, 633, 694, 831, 868, 899, 910, 1017
BssSI CACGAG 1 cut(s) 312
BssT1I CCWWGG 2 cut(s) 168, 977
Bst2BI CACGAG 1 cut(s) 312
Bst2UI CCWGG 2 cut(s) 456, 681
Bst4CI ACNGT 4 cut(s) 533, 559, 1031, 1105
Bst6I CTCTTC 1 cut(s) 468
BstAFI CTTAAG 1 cut(s) 401
BstC8I GCNNGC 2 cut(s) 141, 1120
BstDEI CTNAG 3 cut(s) 125, 418, 774
BstDSI CCRYGG 1 cut(s) 168
BstF5I GGATG 2 cut(s) 19, 1012
BstHHI GCGC 1 cut(s) 327
BstKTI GATC 9 cut(s) 31, 319, 636, 697, 834, 871, 902, 913, 1020
BstMAI GTCTC 2 cut(s) 260, 1041
BstMBI GATC 9 cut(s) 28, 316, 633, 694, 831, 868, 899, 910, 1017
BstMWI GCNNNNNNNGC 6 cut(s) 95, 104, 110, 308, 671, 995
BstNI CCWGG 2 cut(s) 456, 681
BstNSI RCATGY 1 cut(s) 706
BstSCI CCNGG 2 cut(s) 454, 679
BstSFI CTRYAG 1 cut(s) 987
BstSLI GKGCMC 2 cut(s) 339, 933
BstV1I GCAGC 5 cut(s) 91, 122, 453, 484, 782
BstX2I RGATCY 3 cut(s) 868, 910, 1017
BstYI RGATCY 3 cut(s) 868, 910, 1017
Bsu15I ATCGAT 1 cut(s) 207
BsuI GTATCC 1 cut(s) 935
BsuRI GGCC 5 cut(s) 302, 468, 767, 931, 975
BsuTUI ATCGAT 1 cut(s) 207
BtgI CCRYGG 1 cut(s) 168
BtgZI GCGATG 1 cut(s) 813
BtsCI GGATG 2 cut(s) 19, 1012
BtsIMutI CAGTG 6 cut(s) 239, 249, 1000, 1036, 1101, 1149
Cac8I GCNNGC 2 cut(s) 141, 1120
CaiI CAGNNNCTG 1 cut(s) 1103
CfoI GCGC 1 cut(s) 327
Cfr13I GGNCC 6 cut(s) 300, 677, 765, 929, 930, 974
ClaI ATCGAT 1 cut(s) 207
CsiI ACCWGGT 1 cut(s) 679
Csp6I GTAC 3 cut(s) 36, 430, 565
CviAII CATG 7 cut(s) 32, 169, 451, 649, 703, 826, 1115
CviQI GTAC 3 cut(s) 36, 430, 565
DdeI CTNAG 3 cut(s) 125, 418, 774
DpnI GATC 9 cut(s) 30, 318, 635, 696, 833, 870, 901, 912, 1019
DpnII GATC 9 cut(s) 28, 316, 633, 694, 831, 868, 899, 910, 1017
DraIII CACNNNGTG 1 cut(s) 878
EaeI YGGCCR 1 cut(s) 466
Eam1104I CTCTTC 1 cut(s) 468
EarI CTCTTC 1 cut(s) 468
Ecl136II GAGCTC 1 cut(s) 584
Eco130I CCWWGG 2 cut(s) 168, 977
Eco24I GRGCYC 2 cut(s) 586, 933
Eco31I GGTCTC 2 cut(s) 260, 1041
Eco47I GGWCC 1 cut(s) 677
Eco53kI GAGCTC 1 cut(s) 584
Eco57I CTGAAG 2 cut(s) 78, 84
Eco88I CYCGRG 1 cut(s) 579
EcoICRI GAGCTC 1 cut(s) 584
EcoO109I RGGNCCY 3 cut(s) 929, 930, 974
EcoRII CCWGG 2 cut(s) 454, 679
EcoT14I CCWWGG 2 cut(s) 168, 977
EcoT38I GRGCYC 2 cut(s) 586, 933
ErhI CCWWGG 2 cut(s) 168, 977
FaeI CATG 7 cut(s) 35, 172, 454, 652, 706, 829, 1118
FalI AAGNNNNNCTT 2 cut(s) 858, 890
FaqI GGGAC 1 cut(s) 588
FatI CATG 7 cut(s) 31, 168, 450, 648, 702, 825, 1114
FauI CCCGC 1 cut(s) 919
FbaI TGATCA 2 cut(s) 28, 316
Fnu4HI GCNGC 6 cut(s) 105, 108, 111, 442, 498, 796
FokI GGATG 2 cut(s) 26, 1019
FriOI GRGCYC 2 cut(s) 586, 933
Fsp4HI GCNGC 6 cut(s) 105, 108, 111, 442, 498, 796
FspBI CTAG 3 cut(s) 332, 407, 639
GlaI GCGC 1 cut(s) 326
GluI GCNGC 6 cut(s) 105, 108, 111, 442, 498, 796
GsaI CCCAGC 1 cut(s) 301
GsuI CTGGAG 1 cut(s) 935
HaeIII GGCC 5 cut(s) 302, 468, 767, 931, 975
HapII CCGG 1 cut(s) 675
HhaI GCGC 1 cut(s) 327
Hin1II CATG 7 cut(s) 35, 172, 454, 652, 706, 829, 1118
Hin6I GCGC 1 cut(s) 325
HinP1I GCGC 1 cut(s) 325
HincII GTYRAC 2 cut(s) 283, 967
HindII GTYRAC 2 cut(s) 283, 967
HinfI GANTC 4 cut(s) 156, 187, 545, 1109
HpaI GTTAAC 1 cut(s) 283
HpaII CCGG 1 cut(s) 675
HphI GGTGA 1 cut(s) 32
Hpy166II GTNNAC 6 cut(s) 283, 388, 461, 862, 967, 1108
Hpy188I TCNGA 6 cut(s) 128, 421, 588, 899, 904, 1088
Hpy188III TCNNGA 5 cut(s) 314, 639, 698, 914, 939
Hpy8I GTNNAC 6 cut(s) 283, 388, 461, 862, 967, 1108
HpyAV CCTTC 4 cut(s) 4, 794, 899, 1066
HpyCH4III ACNGT 4 cut(s) 533, 559, 1031, 1105
HpyCH4V TGCA 7 cut(s) 201, 239, 425, 441, 839, 989, 1122
HpyF10VI GCNNNNNNNGC 6 cut(s) 95, 104, 110, 308, 671, 995
HpyF3I CTNAG 3 cut(s) 125, 418, 774
Hsp92II CATG 7 cut(s) 35, 172, 454, 652, 706, 829, 1118
HspAI GCGC 1 cut(s) 325
KpnI GGTACC 1 cut(s) 568
Ksp22I TGATCA 2 cut(s) 28, 316
KspAI GTTAAC 1 cut(s) 283
Kzo9I GATC 9 cut(s) 28, 316, 633, 694, 831, 868, 899, 910, 1017
LguI GCTCTTC 1 cut(s) 468
LmnI GCTCC 2 cut(s) 784, 1057
Lsp1109I GCAGC 5 cut(s) 91, 122, 453, 484, 782
LweI GCATC 3 cut(s) 226, 412, 472
MabI ACCWGGT 1 cut(s) 679
MaeI CTAG 3 cut(s) 332, 407, 639
MaeIII GTNAC 1 cut(s) 991
MalI GATC 9 cut(s) 30, 318, 635, 696, 833, 870, 901, 912, 1019
MboI GATC 9 cut(s) 28, 316, 633, 694, 831, 868, 899, 910, 1017
MboII GAAGA 5 cut(s) 19, 84, 108, 485, 779
MflI RGATCY 3 cut(s) 868, 910, 1017
MhlI GDGCHC 4 cut(s) 339, 586, 933, 1062
MlsI TGGCCA 1 cut(s) 468
MluCI AATT 4 cut(s) 306, 411, 507, 668
MluNI TGGCCA 1 cut(s) 468
MlyI GAGTC 3 cut(s) 150, 539, 1103
MmeI TCCRAC 2 cut(s) 164, 1066
MnlI CCTC 6 cut(s) 174, 716, 798, 841, 965, 1061
Mox20I TGGCCA 1 cut(s) 468
MroXI GAANNNNTTC 1 cut(s) 191
MscI TGGCCA 1 cut(s) 468
MseI TTAA 4 cut(s) 282, 366, 402, 1150
MslI CAYNNNNRTG 1 cut(s) 1005
Msp20I TGGCCA 1 cut(s) 468
MspA1I CMGCKG 2 cut(s) 104, 233
MspCI CTTAAG 1 cut(s) 401
MspI CCGG 1 cut(s) 675
MspR9I CCNGG 2 cut(s) 456, 681
MvaI CCWGG 2 cut(s) 456, 681
MwoI GCNNNNNNNGC 6 cut(s) 95, 104, 110, 308, 671, 995
NcoI CCATGG 1 cut(s) 168
NdeII GATC 9 cut(s) 28, 316, 633, 694, 831, 868, 899, 910, 1017
NlaIII CATG 7 cut(s) 35, 172, 454, 652, 706, 829, 1118
NlaIV GGNNCC 5 cut(s) 566, 780, 930, 931, 932
NmuCI GTSAC 1 cut(s) 991
NspI RCATGY 1 cut(s) 706
PciI ACATGT 1 cut(s) 702
PciSI GCTCTTC 1 cut(s) 468
PdmI GAANNNNTTC 1 cut(s) 191
PfeI GAWTC 1 cut(s) 187
PflMI CCANNNNNTGG 1 cut(s) 174
PkrI GCNGC 6 cut(s) 106, 109, 112, 443, 499, 797
PleI GAGTC 3 cut(s) 150, 539, 1103
PpsI GAGTC 3 cut(s) 150, 539, 1103
PscI ACATGT 1 cut(s) 702
Psp124BI GAGCTC 1 cut(s) 586
Psp6I CCWGG 2 cut(s) 454, 679
PspFI CCCAGC 1 cut(s) 297
PspGI CCWGG 2 cut(s) 454, 679
PspN4I GGNNCC 5 cut(s) 566, 780, 930, 931, 932
PspOMI GGGCCC 1 cut(s) 929
PspPI GGNCC 6 cut(s) 300, 677, 765, 929, 930, 974
PstI CTGCAG 1 cut(s) 991
PstNI CAGNNNCTG 1 cut(s) 1103
PsuI RGATCY 3 cut(s) 868, 910, 1017
PvuII CAGCTG 1 cut(s) 104
RsaI GTAC 3 cut(s) 37, 431, 566
RsaNI GTAC 3 cut(s) 36, 430, 565
RseI CAYNNNNRTG 1 cut(s) 1005
SacI GAGCTC 1 cut(s) 586
SapI GCTCTTC 1 cut(s) 468
SaqAI TTAA 4 cut(s) 282, 366, 402, 1150
SatI GCNGC 6 cut(s) 105, 108, 111, 442, 498, 796
Sau3AI GATC 9 cut(s) 28, 316, 633, 694, 831, 868, 899, 910, 1017
Sau96I GGNCC 6 cut(s) 300, 677, 765, 929, 930, 974
SchI GAGTC 3 cut(s) 150, 539, 1103
ScrFI CCNGG 2 cut(s) 456, 681
SduI GDGCHC 4 cut(s) 339, 586, 933, 1062
SexAI ACCWGGT 1 cut(s) 679
SfaNI GCATC 3 cut(s) 226, 412, 472
SfcI CTRYAG 1 cut(s) 987
SinI GGWCC 1 cut(s) 677
SmiMI CAYNNNNRTG 1 cut(s) 1005
SmlI CTYRAG 1 cut(s) 401
SmoI CTYRAG 1 cut(s) 401
Sse9I AATT 4 cut(s) 306, 411, 507, 668
SsiI CCGC 4 cut(s) 107, 231, 377, 926
SspMI CTAG 3 cut(s) 332, 407, 639
SstI GAGCTC 1 cut(s) 586
StyD4I CCNGG 2 cut(s) 454, 679
StyI CCWWGG 2 cut(s) 168, 977
TaaI ACNGT 4 cut(s) 533, 559, 1031, 1105
TaqI TCGA 1 cut(s) 207
TasI AATT 4 cut(s) 306, 411, 507, 668
TauI GCSGC 1 cut(s) 110
TfiI GAWTC 1 cut(s) 187
Tru1I TTAA 4 cut(s) 282, 366, 402, 1150
Tru9I TTAA 4 cut(s) 282, 366, 402, 1150
TscAI CASTG 6 cut(s) 246, 256, 1007, 1036, 1108, 1149
TseFI GTSAC 1 cut(s) 991
TseI GCWGC 5 cut(s) 104, 110, 441, 497, 795
Tsp45I GTSAC 1 cut(s) 991
TspDTI ATGAA 4 cut(s) 605, 665, 669, 753
TspGWI ACGGA 1 cut(s) 162
TspRI CASTG 6 cut(s) 246, 256, 1007, 1036, 1108, 1149
Van91I CCANNNNNTGG 1 cut(s) 174
Vha464I CTTAAG 1 cut(s) 401
VpaK11BI GGWCC 1 cut(s) 677
XapI RAATTY 2 cut(s) 411, 668
XbaI TCTAGA 1 cut(s) 638
XceI RCATGY 1 cut(s) 706
XcmI CCANNNNNNNNNTGG 1 cut(s) 872
XmnI GAANNNNTTC 1 cut(s) 191
XspI CTAG 3 cut(s) 332, 407, 639
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.