Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0018950.1

Orthogroup ID

OG0003741

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1603

Gene Structure 1602 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0018950.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

atgatgtggaatagttggaatcacttcaactgcaaaattgaggagaaaaccataaaagaaactgctgatgctctggtatccactggtctctctaaacttggatataactatgttaacatagatgattgctgggcagaaatagctcgcgatgtaaagggtaatctagtggccaagaaatcggcatttccatcaggcattaaagctcttgcggattatgtccacagcaagggtcttaagctaggaatctactcagatgcagggtactttacttgcagcaaaactatgcctggttcacttggtcatgaagaacaagatgccaatacctttgctgcttggggcatcgattatttgaaatatgataactgttataatgatggctcaaacccaacagttagataccctgtaatgacccgagctctaatgaaagccagccgtcccatattcttctctctctgcgaatggggagatatgcaccctgctttatggggtgccaagttaggaaatagctggagaactacaaaagacatttctgatacatgggaaagtatggtctccagagcagacatgaatgaattt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0009505 GO:0030312 GO:0044464 GO:0048046 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00052 ko00561 ko00600 ko00603 map00052 map00561 map00600 map00603

Pfam Domains

Protein Families

Melibiase_2 Melibiase_2_C

Protein Analysis

192

Amino Acids

21.63

Weight (kDa)

6.08

Isoelectric Point (pI)

23.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003741)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08380 AT5G08380
fragaria_vesca	FvH4_2g12370 FvH4_2g12370 FvH4_2g12370 FvH4_4g37361
malus_domestica	MD13G1000400.v1.1 MD16G1012600.v1.1
prunus_persica	Prupe.1G352200_v2.0.a1 Prupe.1G352200_v2.0.a1
pyrus_communis	pycom13g00040 pycom16g01180 pycom2749g00030
rosa_chinensis	RchiOBHm_Chr4g0447241 RchiOBHm_Chr6g0272391
rosa_laevigata	RLG00000005594 RLG00000013676
rosa_multiflora	Rmu_co8492007.1_g000001 Rmu_sc0018949.1_g000001 Rmu_sc0018950.1_g000001
rosa_roxburghii	Rroxscaffold_5G00387600 Rroxscaffold_7G00196300
rosa_rugosa	Rorug04G0379000 Rorug06G0069000
rosa_samantha	Rh4AG440500 Rh4BG449500 Rh4CG466600 Rh4DG448000 Rh6AG184900 Rh6BG188200 Rh6CG186100 Rh6DG177900
rosa_wichuraiana	Rw4G037690 Rw6G015990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	369
AccB1I	GGYRCC	1 cut(s)	488
AccII	CGCG	1 cut(s)	147
AciI	CCGC	1 cut(s)	209
AcoI	YGGCCR	1 cut(s)	168
AcsI	RAATTY	1 cut(s)	572
AfaI	GTAC	1 cut(s)	263
AfiI	CCNNNNNNNGG	1 cut(s)	226
AflII	CTTAAG	1 cut(s)	233
AgsI	TTSAA	2 cut(s)	28, 352
AjnI	CCWGG	1 cut(s)	286
AluBI	AGCT	5 cut(s)	143, 203, 238, 416, 507
AluI	AGCT	5 cut(s)	143, 203, 238, 416, 507
Alw21I	GWGCWC	1 cut(s)	418
Alw26I	GTCTC	2 cut(s)	92, 556
Ama87I	CYCGRG	1 cut(s)	411
AoxI	GGCC	1 cut(s)	168
ApeKI	GCWGC	2 cut(s)	273, 329
ApoI	RAATTY	1 cut(s)	572
Asp700I	GAANNNNTTC	1 cut(s)	23
AvaI	CYCGRG	1 cut(s)	411
BalI	TGGCCA	1 cut(s)	170
BanI	GGYRCC	1 cut(s)	488
BanII	GRGCYC	1 cut(s)	418
Bbv12I	GWGCWC	1 cut(s)	418
BbvI	GCAGC	2 cut(s)	285, 316
BccI	CCATC	2 cut(s)	196, 368
BceAI	ACGGC	1 cut(s)	417
BciT130I	CCWGG	1 cut(s)	288
BciVI	GTATCC	1 cut(s)	88
BcoDI	GTCTC	2 cut(s)	92, 556
BfaI	CTAG	2 cut(s)	164, 239
BfrI	CTTAAG	1 cut(s)	233
BfuI	GTATCC	1 cut(s)	88
BisI	GCNGC	2 cut(s)	274, 330
BlsI	GCNGC	2 cut(s)	275, 331
Bme1390I	CCNGG	1 cut(s)	288
BmeT110I	CYCGRG	1 cut(s)	411
BmiI	GGNNCC	1 cut(s)	490
BmrFI	CCNGG	1 cut(s)	288
BmsI	GCATC	4 cut(s)	58, 244, 304, 348
BpmI	CTGGAG	2 cut(s)	529, 538
Bsa29I	ATCGAT	1 cut(s)	342
BsaI	GGTCTC	2 cut(s)	92, 556
Bsc4I	CCNNNNNNNGG	1 cut(s)	226
Bse1I	ACTGG	1 cut(s)	88
BseBI	CCWGG	1 cut(s)	288
BseCI	ATCGAT	1 cut(s)	342
BseLI	CCNNNNNNNGG	1 cut(s)	226
BseMII	CTCAG	1 cut(s)	264
BseNI	ACTGG	1 cut(s)	88
BseRI	GAGGAG	1 cut(s)	56
BseXI	GCAGC	2 cut(s)	285, 316
BseYI	CCCAGC	1 cut(s)	129
Bsh1236I	CGCG	1 cut(s)	147
BshFI	GGCC	1 cut(s)	170
BshNI	GGYRCC	1 cut(s)	488
BshVI	ATCGAT	1 cut(s)	342
BsiHKAI	GWGCWC	1 cut(s)	418
BsiHKCI	CYCGRG	1 cut(s)	411
BslFI	GGGAC	1 cut(s)	420
BslI	CCNNNNNNNGG	1 cut(s)	226
BsmAI	GTCTC	2 cut(s)	92, 556
BsmFI	GGGAC	1 cut(s)	420
BsnI	GGCC	1 cut(s)	170
Bso31I	GGTCTC	2 cut(s)	92, 556
BsoBI	CYCGRG	1 cut(s)	411
Bsp1286I	GDGCHC	1 cut(s)	418
Bsp68I	TCGCGA	1 cut(s)	147
BspACI	CCGC	1 cut(s)	209
BspANI	GGCC	1 cut(s)	170
BspCNI	CTCAG	1 cut(s)	263
BspDI	ATCGAT	1 cut(s)	342
BspFNI	CGCG	1 cut(s)	147
BspHI	TCATGA	1 cut(s)	301
BspLI	GGNNCC	1 cut(s)	490
BspT107I	GGYRCC	1 cut(s)	488
BspTI	CTTAAG	1 cut(s)	233
BspTNI	GGTCTC	2 cut(s)	92, 556
BsrI	ACTGG	1 cut(s)	88
Bst2UI	CCWGG	1 cut(s)	288
Bst4CI	ACNGT	2 cut(s)	365, 391
BstAFI	CTTAAG	1 cut(s)	233
BstC8I	GCNNGC	2 cut(s)	145, 430
BstDEI	CTNAG	1 cut(s)	250
BstFNI	CGCG	1 cut(s)	147
BstMAI	GTCTC	2 cut(s)	92, 556
BstMWI	GCNNNNNNNGC	1 cut(s)	140
BstNI	CCWGG	1 cut(s)	288
BstSCI	CCNGG	1 cut(s)	286
BstUI	CGCG	1 cut(s)	147
BstV1I	GCAGC	2 cut(s)	285, 316
Bsu15I	ATCGAT	1 cut(s)	342
BsuI	GTATCC	1 cut(s)	88
BsuRI	GGCC	1 cut(s)	170
BsuTUI	ATCGAT	1 cut(s)	342
BtgZI	GCGATG	1 cut(s)	162
BtsIMutI	CAGTG	1 cut(s)	81
BtuMI	TCGCGA	1 cut(s)	147
Cac8I	GCNNGC	2 cut(s)	145, 430
CciI	TCATGA	1 cut(s)	301
ClaI	ATCGAT	1 cut(s)	342
Csp6I	GTAC	1 cut(s)	262
CviAII	CATG	3 cut(s)	302, 537, 565
CviJI	RGCY	9 cut(s)	143, 170, 203, 238, 378, 416, 428, 432, 507
CviKI_1	RGCY	9 cut(s)	143, 170, 203, 238, 378, 416, 428, 432, 507
CviQI	GTAC	1 cut(s)	262
DdeI	CTNAG	1 cut(s)	250
EaeI	YGGCCR	1 cut(s)	168
Ecl136II	GAGCTC	1 cut(s)	416
Eco24I	GRGCYC	1 cut(s)	418
Eco31I	GGTCTC	2 cut(s)	92, 556
Eco53kI	GAGCTC	1 cut(s)	416
Eco88I	CYCGRG	1 cut(s)	411
EcoICRI	GAGCTC	1 cut(s)	416
EcoRII	CCWGG	1 cut(s)	286
EcoT38I	GRGCYC	1 cut(s)	418
FaeI	CATG	3 cut(s)	305, 540, 568
FaqI	GGGAC	1 cut(s)	420
FatI	CATG	3 cut(s)	301, 536, 564
Fnu4HI	GCNGC	2 cut(s)	274, 330
FriOI	GRGCYC	1 cut(s)	418
Fsp4HI	GCNGC	2 cut(s)	274, 330
FspBI	CTAG	2 cut(s)	164, 239
GluI	GCNGC	2 cut(s)	274, 330
GsaI	CCCAGC	1 cut(s)	133
GsuI	CTGGAG	2 cut(s)	529, 538
HaeIII	GGCC	1 cut(s)	170
Hin1II	CATG	3 cut(s)	305, 540, 568
HincII	GTYRAC	1 cut(s)	115
HindII	GTYRAC	1 cut(s)	115
HinfI	GANTC	2 cut(s)	19, 243
HpaI	GTTAAC	1 cut(s)	115
Hpy166II	GTNNAC	3 cut(s)	115, 220, 293
Hpy188I	TCNGA	2 cut(s)	253, 532
Hpy188III	TCNNGA	3 cut(s)	146, 302, 555
Hpy8I	GTNNAC	3 cut(s)	115, 220, 293
HpyCH4III	ACNGT	2 cut(s)	365, 391
HpyCH4V	TGCA	4 cut(s)	33, 257, 273, 472
HpyF10VI	GCNNNNNNNGC	1 cut(s)	140
HpyF3I	CTNAG	1 cut(s)	250
Hsp92II	CATG	3 cut(s)	305, 540, 568
KspAI	GTTAAC	1 cut(s)	115
Lsp1109I	GCAGC	2 cut(s)	285, 316
LweI	GCATC	4 cut(s)	58, 244, 304, 348
MaeI	CTAG	2 cut(s)	164, 239
MboII	GAAGA	2 cut(s)	317, 436
MhlI	GDGCHC	1 cut(s)	418
MlsI	TGGCCA	1 cut(s)	170
MluCI	AATT	2 cut(s)	36, 572
MluNI	TGGCCA	1 cut(s)	170
MnlI	CCTC	1 cut(s)	34
Mox20I	TGGCCA	1 cut(s)	170
MroXI	GAANNNNTTC	1 cut(s)	23
MscI	TGGCCA	1 cut(s)	170
MseI	TTAA	3 cut(s)	114, 198, 234
Msp20I	TGGCCA	1 cut(s)	170
MspCI	CTTAAG	1 cut(s)	233
MspR9I	CCNGG	1 cut(s)	288
MvaI	CCWGG	1 cut(s)	288
MvnI	CGCG	1 cut(s)	147
MwoI	GCNNNNNNNGC	1 cut(s)	140
NlaIII	CATG	3 cut(s)	305, 540, 568
NlaIV	GGNNCC	1 cut(s)	490
NruI	TCGCGA	1 cut(s)	147
PagI	TCATGA	1 cut(s)	301
PdmI	GAANNNNTTC	1 cut(s)	23
PfeI	GAWTC	2 cut(s)	19, 243
PkrI	GCNGC	2 cut(s)	275, 331
PsiI	TTATAA	1 cut(s)	369
Psp124BI	GAGCTC	1 cut(s)	418
Psp6I	CCWGG	1 cut(s)	286
PspFI	CCCAGC	1 cut(s)	129
PspGI	CCWGG	1 cut(s)	286
PspN4I	GGNNCC	1 cut(s)	490
RruI	TCGCGA	1 cut(s)	147
RsaI	GTAC	1 cut(s)	263
RsaNI	GTAC	1 cut(s)	262
SacI	GAGCTC	1 cut(s)	418
SaqAI	TTAA	3 cut(s)	114, 198, 234
SatI	GCNGC	2 cut(s)	274, 330
ScrFI	CCNGG	1 cut(s)	288
SduI	GDGCHC	1 cut(s)	418
SetI	ASST	6 cut(s)	145, 205, 240, 326, 418, 509
SfaNI	GCATC	4 cut(s)	58, 244, 304, 348
SmlI	CTYRAG	1 cut(s)	233
SmoI	CTYRAG	1 cut(s)	233
Sse9I	AATT	2 cut(s)	36, 572
SsiI	CCGC	1 cut(s)	209
SspMI	CTAG	2 cut(s)	164, 239
SstI	GAGCTC	1 cut(s)	418
StyD4I	CCNGG	1 cut(s)	286
TaaI	ACNGT	2 cut(s)	365, 391
TaqI	TCGA	1 cut(s)	342
TasI	AATT	2 cut(s)	36, 572
TfiI	GAWTC	2 cut(s)	19, 243
Tru1I	TTAA	3 cut(s)	114, 198, 234
Tru9I	TTAA	3 cut(s)	114, 198, 234
TscAI	CASTG	1 cut(s)	88
TseI	GCWGC	2 cut(s)	273, 329
TspDTI	ATGAA	2 cut(s)	318, 437
TspRI	CASTG	1 cut(s)	88
Vha464I	CTTAAG	1 cut(s)	233
XapI	RAATTY	1 cut(s)	572
XmnI	GAANNNNTTC	1 cut(s)	23
XspI	CTAG	2 cut(s)	164, 239

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.