Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0004919

Physical Location & Seq

Genomic Coordinates Forward (+)

16000579 .. 16004261

Gene Structure 3683 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g18750.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGCTTCTCTGGCAGGGCATCTCTGAGCCCCCTTCATTTAAGCCTCACCATCTCCCTTTGGCCTCCAATTACCCAAAAACCCAAGTACAAACAGGGATGGCTGTTCCTCGAGTAAACAAGAAATTGCTTCAAGAGCTTGAATCTATGGGATTTCCCACAGCTCGGGCAACTCGAGCACTTCATTATTCAGGTAATGCTAGCTTAGAGGCTGGTATAGACTGGATCATTGATCACGAGAATGACCCGGACATTGATCAGATGCCCTTGGTACCAGTAGACATTGATATTGAATCTCCAGAGCCATTCCATATCACGGAGGCGATGAAAATAAAAGCACAAGAGTTGAGGGATCAAACACGCAAGAAGAGGAAAGAAGAAGAAAAGAAATTGGAACAACAAATGGAACGAGAAAGGGAGAAGGAGAGGATTCGATCTGGTAAGGAAGTCGTACAAGCAAAGCAAATCTTAGAAGACAACGAAAGAAAACGTAATATAGCGTCTCGGAATTCTGAGAAAGAGGAAGAGAAACGAGCAAGAGAGAGAATTCGCTGGAAACTAGAACAAGATAAGTTAGAAAGAAGAGTAAAGCTTGGATTACCACCAGGACACACTGCATCTGCGAAACTTTCTATACCTGTGAGGGGGCAAATCCAGAAATCATTGCCCGTCCGATCTGTTGCAAAGTCAGAACATATGAGAGAGTGTTTAAGGTCTCTAAGGCGCAACCACAAGGATGATGATGCTAGAGTACGACGAGCTTTCCAAACTCTGATGACTTATGTTGGCAATGTCGCAAAGAATCCTGATCAAGAAAAATTCCGGAAGATTAGACTCAGTAATCCGTCATTCTTGGATAGAGTTGGAAGTTTGATTGGAGGAATAGAGTTTCTTGAGCTCTGTGGGTTTGAGAGAACTGAAGCGGGAGAGTTCTTGTATCTTCCTCGCGATAAGGTTGACATGGCAACATTGTATTCCGCTGCTTCTGAACTGAAGTCTGCATTGACTAACCCGTTCTTTGGCCTTCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PUB UBA

Protein Analysis

343

Amino Acids

39.48

Weight (kDa)

9.38

Isoelectric Point (pI)

56.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UBA_7	PF22562	39 - 86	1.3e-16	UBA-like domain
UBA	PF00627	41 - 75	4.4e-06	UBA/TS-N domain
PUB	PF09409	249 - 319	6.8e-21	PUB domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004919)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48690 AT5G48690 AT5G48690
fragaria_vesca	FvH4_2g18750 FvH4_2g18750
malus_domestica	MD05G1173000.v1.1
prunus_persica	Prupe.8G200600_v2.0.a1 Prupe.8G200600_v2.0.a1 Prupe.8G200600_v2.0.a1 Prupe.8G200600_v2.0.a1 Prupe.8G200600_v2.0.a1
pyrus_communis	pycom05g15970
rosa_chinensis	RchiOBHm_Chr6g0284421 RchiOBHm_Chr6g0284441
rosa_laevigata	RLG00000012745
rosa_multiflora	Rmu_sc0005959.1_g000001 Rmu_sc0032923.1_g000001
rosa_roxburghii	Rroxscaffold_7G00184710
rosa_rugosa	Rorug06G0163100 Rorug06G0163200 Rorug06G0163300 Rorug06G0163400 Rorug06G0163500 Rorug06G0163600 Rorug06G0163700
rosa_samantha	Rh6AG275900 Rh6BG276300 Rh6CG278300 Rh6CG278400
rosa_wichuraiana	Rw6G023740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	268
AccB1I	GGYRCC	1 cut(s)	268
AccI	GTMKAC	1 cut(s)	276
AccII	CGCG	1 cut(s)	945
AccIII	TCCGGA	1 cut(s)	819
AciI	CCGC	2 cut(s)	920, 975
AclWI	GGATC	2 cut(s)	230, 357
AcsI	RAATTY	3 cut(s)	505, 543, 815
AcuI	CTGAAG	2 cut(s)	936, 1010
AfaI	GTAC	4 cut(s)	87, 270, 450, 750
AfiI	CCNNNNNNNGG	4 cut(s)	162, 313, 641, 1016
AgsI	TTSAA	3 cut(s)	131, 140, 290
AjnI	CCWGG	1 cut(s)	601
AluBI	AGCT	6 cut(s)	136, 161, 201, 589, 758, 895
AluI	AGCT	6 cut(s)	136, 161, 201, 589, 758, 895
Alw21I	GWGCWC	2 cut(s)	178, 897
Alw26I	GTCTC	2 cut(s)	504, 717
AlwI	GGATC	2 cut(s)	230, 357
Ama87I	CYCGRG	3 cut(s)	108, 162, 171
Aor13HI	TCCGGA	1 cut(s)	819
AoxI	GGCC	2 cut(s)	60, 1018
ApeKI	GCWGC	1 cut(s)	977
ApoI	RAATTY	3 cut(s)	505, 543, 815
Asp718I	GGTACC	1 cut(s)	268
AspLEI	GCGC	1 cut(s)	723
AsuC2I	CCSGG	1 cut(s)	245
AsuHPI	GGTGA	1 cut(s)	38
AsuNHI	GCTAGC	1 cut(s)	197
AvaI	CYCGRG	3 cut(s)	108, 162, 171
BanI	GGYRCC	1 cut(s)	268
BanII	GRGCYC	2 cut(s)	30, 897
BauI	CACGAG	1 cut(s)	233
BbsI	GAAGAC	1 cut(s)	477
Bbv12I	GWGCWC	2 cut(s)	178, 897
BbvI	GCAGC	1 cut(s)	964
BccI	CCATC	2 cut(s)	57, 91
BciT130I	CCWGG	1 cut(s)	603
BclI	TGATCA	3 cut(s)	229, 253, 805
BcnI	CCSGG	1 cut(s)	245
BcoDI	GTCTC	2 cut(s)	504, 717
BfaI	CTAG	3 cut(s)	198, 557, 744
BfmI	CTRYAG	1 cut(s)	1025
BisI	GCNGC	1 cut(s)	978
BlsI	GCNGC	1 cut(s)	979
Bme1390I	CCNGG	2 cut(s)	245, 603
BmeT110I	CYCGRG	3 cut(s)	108, 162, 171
BmiI	GGNNCC	1 cut(s)	270
BmrFI	CCNGG	2 cut(s)	245, 603
BmsI	GCATC	4 cut(s)	27, 249, 623, 730
BmtI	GCTAGC	1 cut(s)	201
BpiI	GAAGAC	1 cut(s)	477
BpmI	CTGGAG	1 cut(s)	279
BpuEI	CTTGAG	1 cut(s)	911
BpuMI	CCSGG	1 cut(s)	245
BsaI	GGTCTC	1 cut(s)	717
BsaJI	CCNNGG	1 cut(s)	264
BsaWI	WCCGGW	1 cut(s)	819
Bsc4I	CCNNNNNNNGG	4 cut(s)	162, 313, 641, 1016
Bse1I	ACTGG	2 cut(s)	224, 272
Bse3DI	GCAATG	2 cut(s)	659, 793
BseAI	TCCGGA	1 cut(s)	819
BseBI	CCWGG	1 cut(s)	603
BseDI	CCNNGG	1 cut(s)	264
BseGI	GGATG	2 cut(s)	102, 739
BseLI	CCNNNNNNNGG	4 cut(s)	162, 313, 641, 1016
BseMI	GCAATG	2 cut(s)	659, 793
BseMII	CTCAG	3 cut(s)	15, 501, 847
BseNI	ACTGG	2 cut(s)	224, 272
BseXI	GCAGC	1 cut(s)	964
Bsh1236I	CGCG	1 cut(s)	945
BshFI	GGCC	2 cut(s)	62, 1020
BshNI	GGYRCC	1 cut(s)	268
BsiHKAI	GWGCWC	2 cut(s)	178, 897
BsiHKCI	CYCGRG	3 cut(s)	108, 162, 171
BsiSI	CCGG	2 cut(s)	245, 820
BslI	CCNNNNNNNGG	4 cut(s)	162, 313, 641, 1016
BsmAI	GTCTC	2 cut(s)	504, 717
BsmBI	CGTCTC	1 cut(s)	504
BsnI	GGCC	2 cut(s)	62, 1020
Bso31I	GGTCTC	1 cut(s)	717
BsoBI	CYCGRG	3 cut(s)	108, 162, 171
Bsp1286I	GDGCHC	3 cut(s)	30, 178, 897
Bsp13I	TCCGGA	1 cut(s)	819
Bsp143I	GATC	7 cut(s)	222, 229, 253, 349, 431, 671, 805
Bsp68I	TCGCGA	1 cut(s)	945
BspACI	CCGC	2 cut(s)	920, 975
BspANI	GGCC	2 cut(s)	62, 1020
BspCNI	CTCAG	3 cut(s)	16, 502, 846
BspEI	TCCGGA	1 cut(s)	819
BspFNI	CGCG	1 cut(s)	945
BspLI	GGNNCC	1 cut(s)	270
BspOI	GCTAGC	1 cut(s)	201
BspPI	GGATC	2 cut(s)	230, 357
BspT107I	GGYRCC	1 cut(s)	268
BspTNI	GGTCTC	1 cut(s)	717
BsrDI	GCAATG	2 cut(s)	659, 793
BsrI	ACTGG	2 cut(s)	224, 272
BssECI	CCNNGG	1 cut(s)	264
BssMI	GATC	7 cut(s)	222, 229, 253, 349, 431, 671, 805
BssSI	CACGAG	1 cut(s)	233
BssT1I	CCWWGG	1 cut(s)	264
Bst2BI	CACGAG	1 cut(s)	233
Bst2UI	CCWGG	1 cut(s)	603
Bst6I	CTCTTC	3 cut(s)	359, 516, 574
BstC8I	GCNNGC	1 cut(s)	199
BstDEI	CTNAG	6 cut(s)	24, 202, 466, 510, 716, 833
BstF5I	GGATG	2 cut(s)	102, 739
BstFNI	CGCG	1 cut(s)	945
BstHHI	GCGC	1 cut(s)	723
BstKTI	GATC	7 cut(s)	225, 232, 256, 352, 434, 674, 808
BstMAI	GTCTC	2 cut(s)	504, 717
BstMBI	GATC	7 cut(s)	222, 229, 253, 349, 431, 671, 805
BstMWI	GCNNNNNNNGC	3 cut(s)	10, 133, 173
BstNI	CCWGG	1 cut(s)	603
BstSCI	CCNGG	2 cut(s)	243, 601
BstSFI	CTRYAG	1 cut(s)	1025
BstUI	CGCG	1 cut(s)	945
BstV1I	GCAGC	1 cut(s)	964
BstV2I	GAAGAC	1 cut(s)	477
BsuRI	GGCC	2 cut(s)	62, 1020
BtgZI	GCGATG	1 cut(s)	335
BtsCI	GGATG	2 cut(s)	102, 739
BtsI	GCAGTG	1 cut(s)	609
BtsIMutI	CAGTG	1 cut(s)	609
BtuMI	TCGCGA	1 cut(s)	945
Cac8I	GCNNGC	1 cut(s)	199
CfoI	GCGC	1 cut(s)	723
CseI	GACGC	1 cut(s)	486
Csp6I	GTAC	4 cut(s)	86, 269, 449, 749
CviAII	CATG	1 cut(s)	958
CviQI	GTAC	4 cut(s)	86, 269, 449, 749
DdeI	CTNAG	6 cut(s)	24, 202, 466, 510, 716, 833
DpnI	GATC	7 cut(s)	224, 231, 255, 351, 433, 673, 807
DpnII	GATC	7 cut(s)	222, 229, 253, 349, 431, 671, 805
Eam1104I	CTCTTC	3 cut(s)	359, 516, 574
EarI	CTCTTC	3 cut(s)	359, 516, 574
Ecl136II	GAGCTC	1 cut(s)	895
Eco130I	CCWWGG	1 cut(s)	264
Eco24I	GRGCYC	2 cut(s)	30, 897
Eco31I	GGTCTC	1 cut(s)	717
Eco53kI	GAGCTC	1 cut(s)	895
Eco57I	CTGAAG	2 cut(s)	936, 1010
Eco88I	CYCGRG	3 cut(s)	108, 162, 171
EcoICRI	GAGCTC	1 cut(s)	895
EcoRI	GAATTC	2 cut(s)	505, 543
EcoRII	CCWGG	1 cut(s)	601
EcoT14I	CCWWGG	1 cut(s)	264
EcoT38I	GRGCYC	2 cut(s)	30, 897
ErhI	CCWWGG	1 cut(s)	264
Esp3I	CGTCTC	1 cut(s)	504
FaeI	CATG	1 cut(s)	961
FaiI	YATR	9 cut(s)	146, 215, 309, 494, 632, 693, 695, 780, 959
FalI	AAGNNNNNCTT	2 cut(s)	449, 481
FatI	CATG	1 cut(s)	957
FauI	CCCGC	1 cut(s)	913
FauNDI	CATATG	1 cut(s)	693
FbaI	TGATCA	3 cut(s)	229, 253, 805
FblI	GTMKAC	1 cut(s)	276
Fnu4HI	GCNGC	1 cut(s)	978
FokI	GGATG	2 cut(s)	109, 746
FriOI	GRGCYC	2 cut(s)	30, 897
Fsp4HI	GCNGC	1 cut(s)	978
FspBI	CTAG	3 cut(s)	198, 557, 744
GlaI	GCGC	1 cut(s)	722
GluI	GCNGC	1 cut(s)	978
GsuI	CTGGAG	1 cut(s)	279
HaeIII	GGCC	2 cut(s)	62, 1020
HapII	CCGG	2 cut(s)	245, 820
HgaI	GACGC	1 cut(s)	486
HhaI	GCGC	1 cut(s)	723
Hin1II	CATG	1 cut(s)	961
Hin6I	GCGC	1 cut(s)	721
HinP1I	GCGC	1 cut(s)	721
HincII	GTYRAC	1 cut(s)	955
HindII	GTYRAC	1 cut(s)	955
HindIII	AAGCTT	1 cut(s)	587
HinfI	GANTC	5 cut(s)	140, 290, 427, 799, 831
HpaII	CCGG	2 cut(s)	245, 820
HphI	GGTGA	1 cut(s)	38
Hpy166II	GTNNAC	3 cut(s)	115, 277, 955
Hpy188I	TCNGA	8 cut(s)	25, 258, 504, 511, 671, 688, 771, 985
Hpy188III	TCNNGA	9 cut(s)	131, 233, 296, 652, 803, 809, 820, 890, 944
Hpy8I	GTNNAC	3 cut(s)	115, 277, 955
Hpy99I	CGWCG	1 cut(s)	756
HpyAV	CCTTC	2 cut(s)	42, 412
HpyCH4IV	ACGT	1 cut(s)	487
HpyCH4V	TGCA	3 cut(s)	614, 680, 998
HpyF10VI	GCNNNNNNNGC	3 cut(s)	10, 133, 173
HpyF3I	CTNAG	6 cut(s)	24, 202, 466, 510, 716, 833
HpySE526I	ACGT	1 cut(s)	487
Hsp92II	CATG	1 cut(s)	961
HspAI	GCGC	1 cut(s)	721
Kpn2I	TCCGGA	1 cut(s)	819
KpnI	GGTACC	1 cut(s)	272
Ksp22I	TGATCA	3 cut(s)	229, 253, 805
Kzo9I	GATC	7 cut(s)	222, 229, 253, 349, 431, 671, 805
Lsp1109I	GCAGC	1 cut(s)	964
LweI	GCATC	4 cut(s)	27, 249, 623, 730
MaeI	CTAG	3 cut(s)	198, 557, 744
MaeII	ACGT	1 cut(s)	487
MalI	GATC	7 cut(s)	224, 231, 255, 351, 433, 673, 807
MboI	GATC	7 cut(s)	222, 229, 253, 349, 431, 671, 805
MboII	GAAGA	8 cut(s)	376, 386, 389, 482, 533, 591, 835, 929
MhlI	GDGCHC	3 cut(s)	30, 178, 897
MluCI	AATT	6 cut(s)	67, 122, 386, 505, 543, 815
MlyI	GAGTC	1 cut(s)	825
MmeI	TCCRAC	1 cut(s)	841
MroI	TCCGGA	1 cut(s)	819
MseI	TTAA	2 cut(s)	39, 707
MslI	CAYNNNNRTG	2 cut(s)	237, 732
MspA1I	CMGCKG	1 cut(s)	977
MspI	CCGG	2 cut(s)	245, 820
MspR9I	CCNGG	2 cut(s)	245, 603
MvaI	CCWGG	1 cut(s)	603
MvnI	CGCG	1 cut(s)	945
MwoI	GCNNNNNNNGC	3 cut(s)	10, 133, 173
NciI	CCSGG	1 cut(s)	245
NdeI	CATATG	1 cut(s)	693
NdeII	GATC	7 cut(s)	222, 229, 253, 349, 431, 671, 805
NheI	GCTAGC	1 cut(s)	197
NlaIII	CATG	1 cut(s)	961
NlaIV	GGNNCC	1 cut(s)	270
NruI	TCGCGA	1 cut(s)	945
PaeR7I	CTCGAG	2 cut(s)	108, 171
PcsI	WCGNNNNNNNCGW	1 cut(s)	169
PfeI	GAWTC	4 cut(s)	140, 290, 427, 799
PkrI	GCNGC	1 cut(s)	979
PleI	GAGTC	1 cut(s)	825
PpsI	GAGTC	1 cut(s)	825
Psp124BI	GAGCTC	1 cut(s)	897
Psp6I	CCWGG	1 cut(s)	601
PspGI	CCWGG	1 cut(s)	601
PspN4I	GGNNCC	1 cut(s)	270
PspXI	VCTCGAGB	2 cut(s)	108, 171
RruI	TCGCGA	1 cut(s)	945
RsaI	GTAC	4 cut(s)	87, 270, 450, 750
RsaNI	GTAC	4 cut(s)	86, 269, 449, 749
RseI	CAYNNNNRTG	2 cut(s)	237, 732
SacI	GAGCTC	1 cut(s)	897
SaqAI	TTAA	2 cut(s)	39, 707
SatI	GCNGC	1 cut(s)	978
Sau3AI	GATC	7 cut(s)	222, 229, 253, 349, 431, 671, 805
SchI	GAGTC	1 cut(s)	825
ScrFI	CCNGG	2 cut(s)	245, 603
SduI	GDGCHC	3 cut(s)	30, 178, 897
SfaNI	GCATC	4 cut(s)	27, 249, 623, 730
SfcI	CTRYAG	1 cut(s)	1025
Sfr274I	CTCGAG	2 cut(s)	108, 171
SlaI	CTCGAG	2 cut(s)	108, 171
SmiMI	CAYNNNNRTG	2 cut(s)	237, 732
SmlI	CTYRAG	3 cut(s)	108, 171, 890
SmoI	CTYRAG	3 cut(s)	108, 171, 890
Sse9I	AATT	6 cut(s)	67, 122, 386, 505, 543, 815
SsiI	CCGC	2 cut(s)	920, 975
SspMI	CTAG	3 cut(s)	198, 557, 744
SstI	GAGCTC	1 cut(s)	897
StyD4I	CCNGG	2 cut(s)	243, 601
StyI	CCWWGG	1 cut(s)	264
TaiI	ACGT	1 cut(s)	490
TaqI	TCGA	3 cut(s)	109, 172, 430
TasI	AATT	6 cut(s)	67, 122, 386, 505, 543, 815
TatI	WGTACW	1 cut(s)	85
TfiI	GAWTC	4 cut(s)	140, 290, 427, 799
Tru1I	TTAA	2 cut(s)	39, 707
Tru9I	TTAA	2 cut(s)	39, 707
TscAI	CASTG	1 cut(s)	616
TseI	GCWGC	1 cut(s)	977
TspDTI	ATGAA	3 cut(s)	24, 170, 338
TspGWI	ACGGA	2 cut(s)	329, 831
TspRI	CASTG	1 cut(s)	616
XapI	RAATTY	3 cut(s)	505, 543, 815
XhoI	CTCGAG	2 cut(s)	108, 171
XmiI	GTMKAC	1 cut(s)	276
XspI	CTAG	3 cut(s)	198, 557, 744

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.