Rh6CG278400

UBX domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0004919
Physical Location & Seq
Forward (+)
45504966 .. 45510422
5457 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG278400.1

Sequence Viewer

Length: 783 bp
ATGGTTCTATATTTGAAGCCTTCTAGCTCGAGGCATCTATATATTTACATGCCATTCCATTTTGTTGTTATTCTGTTGCATCTTTTCAGGGATCAAACACGCAAGAAGAGTAAAGAAGAAGAAAAGAAACTGGAATTACAAATGGAACGAGAAAGAGAGAAGGAGAGGATTCGATCTGGTAAGGAACTCATGGAAGCAAAGCAAATCTTAGAAGACAATGAAAGAAAACGTAATATAGTGTTTCGGAATTCTGAGAAAGAGGAAGAGAAACGAGCAAGAGAGAGAATTCGCTGGAAACTAGAACAAGATAAGTTAGAAAGAAGAGTTAAGCTTGGATTGCCACCAGGACACACAGCATCTGCGAAACTTTCTATACCTGTGAGGGGGGAAATCCAGAAATCATTGCCTGTCCAATCTGTTGCAAAGTCAGAACATATAAGAGAGCGTTTAAGGTCTCTGAGGCGCAACCACAAGGATGATGATGCTAGAGTACGACGAGCCTTCCAAACTCTGCTGATTTATGTTGGAAATGTTGCAAAGAATCCCGATCAAGAAAAATTCCGGAAGATTAGACTCGGTAATCCGTCATTCTTGGATAGAGTTGGAAGTTTGATTGGAGGAATAGAGTTTCTTGAGCTCTGTGGGTTTGAGAGAACTGAAGCAGGAGAGTTCTTGTATCTTCCTCGTGATAAGGTTGACATGGCCACATTATACTCCGCTGCTTCTGAACTGAAGTCTGCATTGACAAACCCTTTCTTTGGCCTTCTGTCTAGAGATGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PUB UBA

Protein Analysis

260

Amino Acids

30.63

Weight (kDa)

9.88

Isoelectric Point (pI)

55.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PUB PF09409 163 - 233 1.5e-20 PUB domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 561
AciI CCGC 1 cut(s) 717
AclWI GGATC 1 cut(s) 99
AcoI YGGCCR 1 cut(s) 702
AcsI RAATTY 3 cut(s) 247, 285, 557
AcuI CTGAAG 2 cut(s) 678, 752
AfaI GTAC 1 cut(s) 492
AfiI CCNNNNNNNGG 2 cut(s) 383, 758
AgsI TTSAA 1 cut(s) 16
AjnI CCWGG 1 cut(s) 343
AluBI AGCT 3 cut(s) 27, 331, 637
AluI AGCT 3 cut(s) 27, 331, 637
Alw21I GWGCWC 1 cut(s) 639
Alw26I GTCTC 1 cut(s) 459
AlwI GGATC 1 cut(s) 99
AlwNI CAGNNNCTG 1 cut(s) 359
Ama87I CYCGRG 1 cut(s) 28
Aor13HI TCCGGA 1 cut(s) 561
AoxI GGCC 2 cut(s) 702, 760
ApeKI GCWGC 1 cut(s) 719
ApoI RAATTY 3 cut(s) 247, 285, 557
AspLEI GCGC 1 cut(s) 465
AvaI CYCGRG 1 cut(s) 28
BalI TGGCCA 1 cut(s) 704
BanII GRGCYC 1 cut(s) 639
BauI CACGAG 1 cut(s) 684
BbsI GAAGAC 1 cut(s) 219
Bbv12I GWGCWC 1 cut(s) 639
BbvI GCAGC 1 cut(s) 706
BciT130I CCWGG 1 cut(s) 345
BcoDI GTCTC 1 cut(s) 459
BfaI CTAG 4 cut(s) 24, 299, 486, 771
BisI GCNGC 1 cut(s) 720
BlsI GCNGC 1 cut(s) 721
Bme1390I CCNGG 1 cut(s) 345
BmeT110I CYCGRG 1 cut(s) 28
BmrFI CCNGG 1 cut(s) 345
BmsI GCATC 4 cut(s) 43, 88, 365, 472
BpiI GAAGAC 1 cut(s) 219
BpuEI CTTGAG 1 cut(s) 653
BsaI GGTCTC 1 cut(s) 459
BsaWI WCCGGW 1 cut(s) 561
Bsc4I CCNNNNNNNGG 2 cut(s) 383, 758
Bse1I ACTGG 1 cut(s) 135
Bse3DI GCAATG 1 cut(s) 401
BseAI TCCGGA 1 cut(s) 561
BseBI CCWGG 1 cut(s) 345
BseGI GGATG 1 cut(s) 481
BseLI CCNNNNNNNGG 2 cut(s) 383, 758
BseMI GCAATG 1 cut(s) 401
BseMII CTCAG 2 cut(s) 243, 449
BseNI ACTGG 1 cut(s) 135
BseXI GCAGC 1 cut(s) 706
BshFI GGCC 2 cut(s) 704, 762
BsiHKAI GWGCWC 1 cut(s) 639
BsiHKCI CYCGRG 1 cut(s) 28
BsiSI CCGG 1 cut(s) 562
BslI CCNNNNNNNGG 2 cut(s) 383, 758
BsmAI GTCTC 1 cut(s) 459
BsnI GGCC 2 cut(s) 704, 762
Bso31I GGTCTC 1 cut(s) 459
BsoBI CYCGRG 1 cut(s) 28
Bsp1286I GDGCHC 1 cut(s) 639
Bsp13I TCCGGA 1 cut(s) 561
Bsp143I GATC 3 cut(s) 91, 173, 547
BspACI CCGC 1 cut(s) 717
BspANI GGCC 2 cut(s) 704, 762
BspCNI CTCAG 2 cut(s) 244, 450
BspEI TCCGGA 1 cut(s) 561
BspPI GGATC 1 cut(s) 99
BspTNI GGTCTC 1 cut(s) 459
BsrDI GCAATG 1 cut(s) 401
BsrI ACTGG 1 cut(s) 135
BssMI GATC 3 cut(s) 91, 173, 547
BssSI CACGAG 1 cut(s) 684
Bst2BI CACGAG 1 cut(s) 684
Bst2UI CCWGG 1 cut(s) 345
Bst6I CTCTTC 3 cut(s) 101, 258, 316
BstDEI CTNAG 3 cut(s) 208, 252, 458
BstF5I GGATG 1 cut(s) 481
BstHHI GCGC 1 cut(s) 465
BstKTI GATC 3 cut(s) 94, 176, 550
BstMAI GTCTC 1 cut(s) 459
BstMBI GATC 3 cut(s) 91, 173, 547
BstMWI GCNNNNNNNGC 1 cut(s) 337
BstNI CCWGG 1 cut(s) 345
BstNSI RCATGY 1 cut(s) 52
BstSCI CCNGG 1 cut(s) 343
BstV1I GCAGC 1 cut(s) 706
BstV2I GAAGAC 1 cut(s) 219
BsuRI GGCC 2 cut(s) 704, 762
BtsCI GGATG 1 cut(s) 481
CaiI CAGNNNCTG 1 cut(s) 359
CfoI GCGC 1 cut(s) 465
Csp6I GTAC 1 cut(s) 491
CviAII CATG 3 cut(s) 49, 190, 700
CviJI RGCY 7 cut(s) 19, 27, 331, 500, 637, 704, 762
CviKI_1 RGCY 7 cut(s) 19, 27, 331, 500, 637, 704, 762
CviQI GTAC 1 cut(s) 491
DdeI CTNAG 3 cut(s) 208, 252, 458
DpnI GATC 3 cut(s) 93, 175, 549
DpnII GATC 3 cut(s) 91, 173, 547
EaeI YGGCCR 1 cut(s) 702
Eam1104I CTCTTC 3 cut(s) 101, 258, 316
EarI CTCTTC 3 cut(s) 101, 258, 316
Ecl136II GAGCTC 1 cut(s) 637
Eco24I GRGCYC 1 cut(s) 639
Eco31I GGTCTC 1 cut(s) 459
Eco53kI GAGCTC 1 cut(s) 637
Eco57I CTGAAG 2 cut(s) 678, 752
Eco88I CYCGRG 1 cut(s) 28
EcoICRI GAGCTC 1 cut(s) 637
EcoRI GAATTC 2 cut(s) 247, 285
EcoRII CCWGG 1 cut(s) 343
EcoT38I GRGCYC 1 cut(s) 639
FaeI CATG 3 cut(s) 52, 193, 703
FalI AAGNNNNNCTT 2 cut(s) 191, 223
FatI CATG 3 cut(s) 48, 189, 699
Fnu4HI GCNGC 1 cut(s) 720
FokI GGATG 1 cut(s) 488
FriOI GRGCYC 1 cut(s) 639
Fsp4HI GCNGC 1 cut(s) 720
FspBI CTAG 4 cut(s) 24, 299, 486, 771
GlaI GCGC 1 cut(s) 464
GluI GCNGC 1 cut(s) 720
HaeIII GGCC 2 cut(s) 704, 762
HapII CCGG 1 cut(s) 562
HhaI GCGC 1 cut(s) 465
Hin1II CATG 3 cut(s) 52, 193, 703
Hin6I GCGC 1 cut(s) 463
HinP1I GCGC 1 cut(s) 463
HincII GTYRAC 1 cut(s) 697
HindII GTYRAC 1 cut(s) 697
HindIII AAGCTT 1 cut(s) 329
HinfI GANTC 3 cut(s) 169, 541, 573
HpaII CCGG 1 cut(s) 562
Hpy166II GTNNAC 1 cut(s) 697
Hpy188I TCNGA 5 cut(s) 246, 253, 430, 459, 727
Hpy188III TCNNGA 7 cut(s) 394, 545, 551, 562, 632, 686, 771
Hpy8I GTNNAC 1 cut(s) 697
Hpy99I CGWCG 1 cut(s) 498
HpyAV CCTTC 4 cut(s) 30, 154, 511, 773
HpyCH4IV ACGT 1 cut(s) 229
HpyCH4V TGCA 4 cut(s) 79, 422, 536, 740
HpyF10VI GCNNNNNNNGC 1 cut(s) 337
HpyF3I CTNAG 3 cut(s) 208, 252, 458
HpySE526I ACGT 1 cut(s) 229
Hsp92II CATG 3 cut(s) 52, 193, 703
HspAI GCGC 1 cut(s) 463
Kpn2I TCCGGA 1 cut(s) 561
Kzo9I GATC 3 cut(s) 91, 173, 547
Lsp1109I GCAGC 1 cut(s) 706
LweI GCATC 4 cut(s) 43, 88, 365, 472
MaeI CTAG 4 cut(s) 24, 299, 486, 771
MaeII ACGT 1 cut(s) 229
MalI GATC 3 cut(s) 93, 175, 549
MboI GATC 3 cut(s) 91, 173, 547
MboII GAAGA 8 cut(s) 118, 128, 131, 224, 275, 333, 577, 671
MhlI GDGCHC 1 cut(s) 639
MlsI TGGCCA 1 cut(s) 704
MluCI AATT 4 cut(s) 134, 247, 285, 557
MluNI TGGCCA 1 cut(s) 704
MlyI GAGTC 1 cut(s) 567
MmeI TCCRAC 2 cut(s) 505, 583
MnlI CCTC 7 cut(s) 24, 159, 253, 375, 453, 611, 693
Mox20I TGGCCA 1 cut(s) 704
MroI TCCGGA 1 cut(s) 561
MscI TGGCCA 1 cut(s) 704
MseI TTAA 2 cut(s) 327, 449
MslI CAYNNNNRTG 1 cut(s) 474
Msp20I TGGCCA 1 cut(s) 704
MspA1I CMGCKG 1 cut(s) 719
MspI CCGG 1 cut(s) 562
MspR9I CCNGG 1 cut(s) 345
MvaI CCWGG 1 cut(s) 345
MwoI GCNNNNNNNGC 1 cut(s) 337
NdeII GATC 3 cut(s) 91, 173, 547
NlaIII CATG 3 cut(s) 52, 193, 703
NspI RCATGY 1 cut(s) 52
PaeR7I CTCGAG 1 cut(s) 28
PfeI GAWTC 2 cut(s) 169, 541
PkrI GCNGC 1 cut(s) 721
PleI GAGTC 1 cut(s) 567
PpsI GAGTC 1 cut(s) 567
Psp124BI GAGCTC 1 cut(s) 639
Psp6I CCWGG 1 cut(s) 343
PspGI CCWGG 1 cut(s) 343
PspXI VCTCGAGB 1 cut(s) 28
PstNI CAGNNNCTG 1 cut(s) 359
RsaI GTAC 1 cut(s) 492
RsaNI GTAC 1 cut(s) 491
RseI CAYNNNNRTG 1 cut(s) 474
SacI GAGCTC 1 cut(s) 639
SaqAI TTAA 2 cut(s) 327, 449
SatI GCNGC 1 cut(s) 720
Sau3AI GATC 3 cut(s) 91, 173, 547
SchI GAGTC 1 cut(s) 567
ScrFI CCNGG 1 cut(s) 345
SduI GDGCHC 1 cut(s) 639
SetI ASST 7 cut(s) 29, 232, 333, 379, 455, 639, 696
SfaNI GCATC 4 cut(s) 43, 88, 365, 472
Sfr274I CTCGAG 1 cut(s) 28
SlaI CTCGAG 1 cut(s) 28
SmiMI CAYNNNNRTG 1 cut(s) 474
SmlI CTYRAG 2 cut(s) 28, 632
SmoI CTYRAG 2 cut(s) 28, 632
Sse9I AATT 4 cut(s) 134, 247, 285, 557
SsiI CCGC 1 cut(s) 717
SspMI CTAG 4 cut(s) 24, 299, 486, 771
SstI GAGCTC 1 cut(s) 639
StyD4I CCNGG 1 cut(s) 343
TaiI ACGT 1 cut(s) 232
TaqI TCGA 2 cut(s) 29, 172
TasI AATT 4 cut(s) 134, 247, 285, 557
TfiI GAWTC 2 cut(s) 169, 541
Tru1I TTAA 2 cut(s) 327, 449
Tru9I TTAA 2 cut(s) 327, 449
TseI GCWGC 1 cut(s) 719
TspDTI ATGAA 1 cut(s) 234
TspGWI ACGGA 1 cut(s) 573
XapI RAATTY 3 cut(s) 247, 285, 557
XbaI TCTAGA 1 cut(s) 770
XceI RCATGY 1 cut(s) 52
XhoI CTCGAG 1 cut(s) 28
XspI CTAG 4 cut(s) 24, 299, 486, 771
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.