RchiOBHm_Chr6g0284421

UBX domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0004919
Physical Location & Seq
Forward (+)
47655150 .. 47658292
3143 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ25505

Sequence Viewer

Length: 822 bp
ATGGCTGTTCCTCGAGTAAACAAGAAATTACTTCAAGAGCTTGAAACAATGGGATTTCCCACAGCTTGGGAAACTCGGGCTCTTCATTATTCAGGTGGGTTTTTAGTCTACATTTTCATTTCTAGCTTTGATAGTCCTTTGAGTATCAGCTTCGATCGAGGCTATGCTAAACTGGAAATTTGTAGAGTTTATGGTACAAAATTAAAGGGTAGTTGGGTCCTTTGGTGTTTTATGTGCCTGTCAAAATGGGTTTATTTGCAATTCATGGATCAAACACGCAAGAAGAGGAAAGAAGAAGAAAAGAAACTGGAATTACAAATGGAACGAGAAAGGGAGAAGAGAATTCGATCCGGTAAGGAACTCATGGAAGCAAAGCAAATCTTAGAAGACAATGAAAGAAAATGTAATATAGCATTTCGGAATTCTGAGAAAGAGGAAGAGAAACGAGCAAGAGAGAGAATTCGCTGGAAACTGGAACAAGATAAGAAATCATTGCCCGTCCGATCTGTTGCAAAGTCAGAACACATGAGAGAGTGTTTAAGGTCTCTGAGGCGCAACCACAAGGTTTTACTTTCAGCATGCAGATTTTCCCATCTTATTATGTTTGGGTGGATTTGGGATGATGATGCTAGGGTACGACGAGCCTTCCAAACTCTGCTGATTTATGTTGGAAATGTTGCAAAGAATCCCGATCAAGAAAAATTCCGGAAGATTAGACTCAGTAATCCGTCATTCTCGGATAGAGTTGGAAGATTGATTGGAGGAATAGAGTTTCTTGAGCTCTGTGGGTTTGAGAGAACTGAAGCAGGAGAGTTCTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PUB UBA

Protein Analysis

273

Amino Acids

32.52

Weight (kDa)

9.63

Isoelectric Point (pI)

55.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PUB PF09409 211 - 272 5e-19 PUB domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 66
AccI GTMKAC 1 cut(s) 108
AccIII TCCGGA 1 cut(s) 705
AclWI GGATC 2 cut(s) 276, 342
AcsI RAATTY 5 cut(s) 177, 342, 421, 459, 701
AcuI CTGAAG 1 cut(s) 822
AfaI GTAC 2 cut(s) 196, 636
AfiI CCNNNNNNNGG 1 cut(s) 66
AgsI TTSAA 2 cut(s) 35, 44
AluBI AGCT 5 cut(s) 40, 65, 126, 150, 781
AluI AGCT 5 cut(s) 40, 65, 126, 150, 781
Alw21I GWGCWC 1 cut(s) 783
Alw26I GTCTC 1 cut(s) 549
AlwI GGATC 2 cut(s) 276, 342
Ama87I CYCGRG 2 cut(s) 12, 75
Aor13HI TCCGGA 1 cut(s) 705
ApoI RAATTY 5 cut(s) 177, 342, 421, 459, 701
AspLEI GCGC 1 cut(s) 555
AspS9I GGNCC 1 cut(s) 217
AvaI CYCGRG 2 cut(s) 12, 75
AvaII GGWCC 1 cut(s) 217
BanII GRGCYC 2 cut(s) 82, 783
BbsI GAAGAC 1 cut(s) 393
Bbv12I GWGCWC 1 cut(s) 783
BccI CCATC 1 cut(s) 600
BcoDI GTCTC 1 cut(s) 549
BfaI CTAG 2 cut(s) 123, 630
Bme18I GGWCC 1 cut(s) 217
BmeT110I CYCGRG 2 cut(s) 12, 75
BmgT120I GGNCC 1 cut(s) 217
BmiI GGNNCC 1 cut(s) 218
BmsI GCATC 1 cut(s) 616
BpiI GAAGAC 1 cut(s) 393
BpuEI CTTGAG 1 cut(s) 797
BsaI GGTCTC 1 cut(s) 549
BsaWI WCCGGW 2 cut(s) 350, 705
Bsc4I CCNNNNNNNGG 1 cut(s) 66
Bse1I ACTGG 3 cut(s) 177, 312, 477
Bse3DI GCAATG 1 cut(s) 491
BseAI TCCGGA 1 cut(s) 705
BseGI GGATG 1 cut(s) 625
BseLI CCNNNNNNNGG 1 cut(s) 66
BseMI GCAATG 1 cut(s) 491
BseMII CTCAG 3 cut(s) 417, 539, 733
BseNI ACTGG 3 cut(s) 177, 312, 477
Bsh1285I CGRYCG 1 cut(s) 157
BsiEI CGRYCG 1 cut(s) 157
BsiHKAI GWGCWC 1 cut(s) 783
BsiHKCI CYCGRG 2 cut(s) 12, 75
BsiSI CCGG 2 cut(s) 351, 706
BslI CCNNNNNNNGG 1 cut(s) 66
BsmAI GTCTC 1 cut(s) 549
Bso31I GGTCTC 1 cut(s) 549
BsoBI CYCGRG 2 cut(s) 12, 75
Bsp1286I GDGCHC 2 cut(s) 82, 783
Bsp13I TCCGGA 1 cut(s) 705
Bsp143I GATC 5 cut(s) 154, 268, 347, 503, 691
BspCNI CTCAG 3 cut(s) 418, 540, 732
BspEI TCCGGA 1 cut(s) 705
BspLI GGNNCC 1 cut(s) 218
BspPI GGATC 2 cut(s) 276, 342
BspQI GCTCTTC 1 cut(s) 87
BspTNI GGTCTC 1 cut(s) 549
BsrDI GCAATG 1 cut(s) 491
BsrI ACTGG 3 cut(s) 177, 312, 477
BssMI GATC 5 cut(s) 154, 268, 347, 503, 691
Bst6I CTCTTC 4 cut(s) 87, 278, 332, 432
BstC8I GCNNGC 1 cut(s) 580
BstDEI CTNAG 4 cut(s) 382, 426, 548, 719
BstF5I GGATG 1 cut(s) 625
BstHHI GCGC 1 cut(s) 555
BstKTI GATC 5 cut(s) 157, 271, 350, 506, 694
BstMAI GTCTC 1 cut(s) 549
BstMBI GATC 5 cut(s) 154, 268, 347, 503, 691
BstMCI CGRYCG 1 cut(s) 157
BstNSI RCATGY 1 cut(s) 582
BstV2I GAAGAC 1 cut(s) 393
BtsCI GGATG 1 cut(s) 625
Cac8I GCNNGC 1 cut(s) 580
CfoI GCGC 1 cut(s) 555
Cfr13I GGNCC 1 cut(s) 217
Csp6I GTAC 2 cut(s) 195, 635
CviAII CATG 4 cut(s) 265, 364, 526, 579
CviJI RGCY 9 cut(s) 5, 40, 65, 80, 126, 150, 162, 644, 781
CviKI_1 RGCY 9 cut(s) 5, 40, 65, 80, 126, 150, 162, 644, 781
CviQI GTAC 2 cut(s) 195, 635
DdeI CTNAG 4 cut(s) 382, 426, 548, 719
DpnI GATC 5 cut(s) 156, 270, 349, 505, 693
DpnII GATC 5 cut(s) 154, 268, 347, 503, 691
Eam1104I CTCTTC 4 cut(s) 87, 278, 332, 432
EarI CTCTTC 4 cut(s) 87, 278, 332, 432
Ecl136II GAGCTC 1 cut(s) 781
Eco24I GRGCYC 2 cut(s) 82, 783
Eco31I GGTCTC 1 cut(s) 549
Eco47I GGWCC 1 cut(s) 217
Eco53kI GAGCTC 1 cut(s) 781
Eco57I CTGAAG 1 cut(s) 822
Eco88I CYCGRG 2 cut(s) 12, 75
EcoICRI GAGCTC 1 cut(s) 781
EcoO109I RGGNCCY 1 cut(s) 217
EcoRI GAATTC 3 cut(s) 342, 421, 459
EcoT38I GRGCYC 2 cut(s) 82, 783
FaeI CATG 4 cut(s) 268, 367, 529, 582
FalI AAGNNNNNCTT 2 cut(s) 365, 397
FatI CATG 4 cut(s) 264, 363, 525, 578
FblI GTMKAC 1 cut(s) 108
FokI GGATG 1 cut(s) 632
FriOI GRGCYC 2 cut(s) 82, 783
FspBI CTAG 2 cut(s) 123, 630
GlaI GCGC 1 cut(s) 554
HapII CCGG 2 cut(s) 351, 706
HhaI GCGC 1 cut(s) 555
Hin1II CATG 4 cut(s) 268, 367, 529, 582
Hin6I GCGC 1 cut(s) 553
HinP1I GCGC 1 cut(s) 553
HinfI GANTC 2 cut(s) 685, 717
HpaII CCGG 2 cut(s) 351, 706
Hpy166II GTNNAC 2 cut(s) 19, 109
Hpy188I TCNGA 6 cut(s) 420, 427, 503, 520, 549, 739
Hpy188III TCNNGA 5 cut(s) 35, 689, 695, 706, 776
Hpy8I GTNNAC 2 cut(s) 19, 109
Hpy99I CGWCG 1 cut(s) 642
HpyAV CCTTC 1 cut(s) 655
HpyCH4V TGCA 4 cut(s) 259, 512, 582, 680
HpyF3I CTNAG 4 cut(s) 382, 426, 548, 719
Hsp92II CATG 4 cut(s) 268, 367, 529, 582
HspAI GCGC 1 cut(s) 553
Kpn2I TCCGGA 1 cut(s) 705
Kzo9I GATC 5 cut(s) 154, 268, 347, 503, 691
LguI GCTCTTC 1 cut(s) 87
LpnPI CCDG 9 cut(s) 78, 158, 251, 293, 364, 451, 458, 719, 792
LweI GCATC 1 cut(s) 616
MaeI CTAG 2 cut(s) 123, 630
MalI GATC 5 cut(s) 156, 270, 349, 505, 693
MboI GATC 5 cut(s) 154, 268, 347, 503, 691
MboII GAAGA 9 cut(s) 74, 295, 305, 308, 349, 398, 449, 721, 762
MhlI GDGCHC 2 cut(s) 82, 783
MluCI AATT 9 cut(s) 26, 177, 200, 260, 311, 342, 421, 459, 701
MlyI GAGTC 1 cut(s) 711
MmeI TCCRAC 2 cut(s) 649, 727
MnlI CCTC 6 cut(s) 21, 152, 279, 427, 543, 755
MroI TCCGGA 1 cut(s) 705
MseI TTAA 2 cut(s) 203, 539
MspI CCGG 2 cut(s) 351, 706
NdeII GATC 5 cut(s) 154, 268, 347, 503, 691
NlaIII CATG 4 cut(s) 268, 367, 529, 582
NlaIV GGNNCC 1 cut(s) 218
NspI RCATGY 1 cut(s) 582
PaeI GCATGC 1 cut(s) 582
PaeR7I CTCGAG 1 cut(s) 12
PciSI GCTCTTC 1 cut(s) 87
PfeI GAWTC 1 cut(s) 685
PflMI CCANNNNNTGG 1 cut(s) 66
Ple19I CGATCG 1 cut(s) 157
PleI GAGTC 1 cut(s) 711
PpsI GAGTC 1 cut(s) 711
PpuMI RGGWCCY 1 cut(s) 217
Psp124BI GAGCTC 1 cut(s) 783
Psp5II RGGWCCY 1 cut(s) 217
PspN4I GGNNCC 1 cut(s) 218
PspPI GGNCC 1 cut(s) 217
PspPPI RGGWCCY 1 cut(s) 217
PspXI VCTCGAGB 1 cut(s) 12
PvuI CGATCG 1 cut(s) 157
RsaI GTAC 2 cut(s) 196, 636
RsaNI GTAC 2 cut(s) 195, 635
SacI GAGCTC 1 cut(s) 783
SapI GCTCTTC 1 cut(s) 87
SaqAI TTAA 2 cut(s) 203, 539
Sau3AI GATC 5 cut(s) 154, 268, 347, 503, 691
Sau96I GGNCC 1 cut(s) 217
SchI GAGTC 1 cut(s) 711
SduI GDGCHC 2 cut(s) 82, 783
SetI ASST 8 cut(s) 42, 67, 97, 128, 152, 545, 567, 783
SfaNI GCATC 1 cut(s) 616
Sfr274I CTCGAG 1 cut(s) 12
SinI GGWCC 1 cut(s) 217
SlaI CTCGAG 1 cut(s) 12
SmlI CTYRAG 2 cut(s) 12, 776
SmoI CTYRAG 2 cut(s) 12, 776
SphI GCATGC 1 cut(s) 582
Sse9I AATT 9 cut(s) 26, 177, 200, 260, 311, 342, 421, 459, 701
SspMI CTAG 2 cut(s) 123, 630
SstI GAGCTC 1 cut(s) 783
TaqI TCGA 4 cut(s) 13, 153, 157, 346
TasI AATT 9 cut(s) 26, 177, 200, 260, 311, 342, 421, 459, 701
TfiI GAWTC 1 cut(s) 685
Tru1I TTAA 2 cut(s) 203, 539
Tru9I TTAA 2 cut(s) 203, 539
TspDTI ATGAA 4 cut(s) 74, 106, 253, 408
TspGWI ACGGA 1 cut(s) 717
Van91I CCANNNNNTGG 1 cut(s) 66
VpaK11BI GGWCC 1 cut(s) 217
XapI RAATTY 5 cut(s) 177, 342, 421, 459, 701
XceI RCATGY 1 cut(s) 582
XhoI CTCGAG 1 cut(s) 12
XmiI GTMKAC 1 cut(s) 108
XspI CTAG 2 cut(s) 123, 630
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.