Rorug06G0163700

UBX domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0004919
Physical Location & Seq
Reverse (-)
23293963 .. 23296541
2579 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0163700.1

Sequence Viewer

Length: 822 bp
ATGAAGGTTGCGGTCTCCGGGAACTGCTCCATTATTAGCAGCTTGCCGTCGCGGTACTCGAAGAGAAAGAGCAACAGAGCACTTGCATTTGATATTGGAATTCATGAGACCATTGGTATTGATTATGCGTGTATGCAATTAGTAACAGTTGTGGTTCTCTATTCGACAGCAGCCTGCAGAGCAATATTGATGTTTTTCCAAGAGCTTGAGGTAGACTCTCCAAAGAGCCTGGAAAATGGGGAAGGTGGACGGCTGATAGCGCCACAGGAGGCTTGTAATCGAATTGCTGAAGTGGTGCAGGAGGCCATAAGGAAGATGGAAATGGTGGCTGATGAGAAAATGAGAATGTACAAGAAAGCCCGAATGGCTGTAGAGGCTTGTGACAGGGAACTCCAGGACAAGGCCAGGGAAGCTCAAGAACTAAAGCTTGAGAGGCAAAAAAAGAAGCAACAAGTCGAAGAGCTGGAGAAAATTGTGAGGCTAAAAAACGCAGAGGCTGATATGTTCCAACTCAAGGCCAATGAGGCTAAACGAGAGGCTGACAGGCTCCAGAGGATTGCTCTTGCCAAGTCAGATAAATCGGAGGAAGAATATGCTAGTAGTTACTTGAAACAACGATTAAGTGAAGTTGAGGCTGAGAAGCAGTATCTGTTTGAGAAGATCAAACTCCAAGAAAGCTCCCGGGTATCCCAGAACAGTGGTGGTAGTGTTGACCCTTCTCAGATGCTGATGTATTCGAAAATGCATGATCTTCTTTACAGTGGTGCTCCCAAGTCGGACTGCCTGCCAAATGAACGCCATCCTTTCAGAAAAAATCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PUB UBA

Protein Analysis

273

Amino Acids

31.14

Weight (kDa)

8.6

Isoelectric Point (pI)

53.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Oberon_cc PF16312 118 - 252 1.7e-51 Coiled-coil region of Oberon
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 213
AccII CGCG 1 cut(s) 52
AciI CCGC 2 cut(s) 11, 52
AcsI RAATTY 1 cut(s) 99
AcuI CTGAAG 1 cut(s) 309
AfaI GTAC 2 cut(s) 56, 350
AfiI CCNNNNNNNGG 2 cut(s) 400, 514
AgsI TTSAA 1 cut(s) 610
AjnI CCWGG 3 cut(s) 228, 393, 404
AluBI AGCT 6 cut(s) 42, 205, 413, 427, 463, 678
AluI AGCT 6 cut(s) 42, 205, 413, 427, 463, 678
Alw21I GWGCWC 2 cut(s) 82, 769
Alw26I GTCTC 2 cut(s) 19, 101
AlwNI CAGNNNCTG 3 cut(s) 497, 649, 727
Ama87I CYCGRG 1 cut(s) 681
AoxI GGCC 3 cut(s) 303, 402, 516
ApeKI GCWGC 2 cut(s) 39, 170
ApoI RAATTY 1 cut(s) 99
AspLEI GCGC 1 cut(s) 262
AsuC2I CCSGG 3 cut(s) 19, 682, 683
AsuII TTCGAA 1 cut(s) 737
AvaI CYCGRG 1 cut(s) 681
Bbv12I GWGCWC 2 cut(s) 82, 769
BbvI GCAGC 2 cut(s) 51, 182
BccI CCATC 2 cut(s) 310, 807
BceAI ACGGC 2 cut(s) 31, 266
BciT130I CCWGG 3 cut(s) 230, 395, 406
BciVI GTATCC 1 cut(s) 697
BcnI CCSGG 3 cut(s) 19, 682, 683
BcoDI GTCTC 2 cut(s) 19, 101
BfaI CTAG 1 cut(s) 597
BfmI CTRYAG 2 cut(s) 175, 369
BfoI RGCGCY 1 cut(s) 263
BfuI GTATCC 1 cut(s) 697
BglI GCCNNNNNGGC 2 cut(s) 365, 524
BisI GCNGC 2 cut(s) 40, 171
BlsI GCNGC 2 cut(s) 41, 172
Bme1390I CCNGG 6 cut(s) 19, 230, 395, 406, 682, 683
BmeT110I CYCGRG 1 cut(s) 681
BmiI GGNNCC 1 cut(s) 548
BmrFI CCNGG 6 cut(s) 19, 230, 395, 406, 682, 683
BmsI GCATC 1 cut(s) 714
BplI GAGNNNNNCTC 4 cut(s) 200, 232, 544, 576
BpmI CTGGAG 3 cut(s) 377, 485, 533
Bpu14I TTCGAA 1 cut(s) 737
BpuEI CTTGAG 4 cut(s) 227, 399, 449, 497
BpuMI CCSGG 3 cut(s) 19, 682, 683
BsaI GGTCTC 2 cut(s) 19, 101
BsaJI CCNNGG 2 cut(s) 405, 681
Bsc4I CCNNNNNNNGG 2 cut(s) 400, 514
BseBI CCWGG 3 cut(s) 230, 395, 406
BseDI CCNNGG 2 cut(s) 405, 681
BseGI GGATG 1 cut(s) 799
BseLI CCNNNNNNNGG 2 cut(s) 400, 514
BseMII CTCAG 2 cut(s) 627, 734
BseXI GCAGC 2 cut(s) 51, 182
BsgI GTGCAG 1 cut(s) 317
Bsh1236I CGCG 1 cut(s) 52
BshFI GGCC 3 cut(s) 305, 404, 518
BsiHKAI GWGCWC 2 cut(s) 82, 769
BsiHKCI CYCGRG 1 cut(s) 681
BsiSI CCGG 2 cut(s) 18, 682
BslI CCNNNNNNNGG 2 cut(s) 400, 514
BsmAI GTCTC 2 cut(s) 19, 101
BsnI GGCC 3 cut(s) 305, 404, 518
Bso31I GGTCTC 2 cut(s) 19, 101
BsoBI CYCGRG 1 cut(s) 681
Bsp119I TTCGAA 1 cut(s) 737
Bsp1286I GDGCHC 2 cut(s) 82, 769
Bsp1407I TGTACA 1 cut(s) 348
Bsp143I GATC 2 cut(s) 660, 748
BspACI CCGC 2 cut(s) 11, 52
BspANI GGCC 3 cut(s) 305, 404, 518
BspCNI CTCAG 2 cut(s) 628, 733
BspFNI CGCG 1 cut(s) 52
BspHI TCATGA 1 cut(s) 103
BspLI GGNNCC 1 cut(s) 548
BspMAI CTGCAG 1 cut(s) 179
BspQI GCTCTTC 1 cut(s) 453
BspT104I TTCGAA 1 cut(s) 737
BspTNI GGTCTC 2 cut(s) 19, 101
BsrGI TGTACA 1 cut(s) 348
BssECI CCNNGG 2 cut(s) 405, 681
BssMI GATC 2 cut(s) 660, 748
Bst2UI CCWGG 3 cut(s) 230, 395, 406
Bst4CI ACNGT 3 cut(s) 148, 698, 761
Bst6I CTCTTC 2 cut(s) 56, 453
BstAUI TGTACA 1 cut(s) 348
BstBI TTCGAA 1 cut(s) 737
BstC8I GCNNGC 3 cut(s) 44, 175, 785
BstDEI CTNAG 2 cut(s) 636, 720
BstF5I GGATG 1 cut(s) 799
BstFNI CGCG 1 cut(s) 52
BstH2I RGCGCY 1 cut(s) 263
BstHHI GCGC 1 cut(s) 262
BstKTI GATC 2 cut(s) 663, 751
BstMAI GTCTC 2 cut(s) 19, 101
BstMBI GATC 2 cut(s) 660, 748
BstMWI GCNNNNNNNGC 7 cut(s) 179, 259, 365, 374, 410, 433, 524
BstNI CCWGG 3 cut(s) 230, 395, 406
BstSCI CCNGG 6 cut(s) 17, 228, 393, 404, 680, 681
BstSFI CTRYAG 2 cut(s) 175, 369
BstUI CGCG 1 cut(s) 52
BstV1I GCAGC 2 cut(s) 51, 182
BstXI CCANNNNNNTGG 1 cut(s) 698
BsuI GTATCC 1 cut(s) 697
BsuRI GGCC 3 cut(s) 305, 404, 518
BtsCI GGATG 1 cut(s) 799
BtsIMutI CAGTG 2 cut(s) 703, 766
Cac8I GCNNGC 3 cut(s) 44, 175, 785
CaiI CAGNNNCTG 3 cut(s) 497, 649, 727
CciI TCATGA 1 cut(s) 103
CfoI GCGC 1 cut(s) 262
Cfr9I CCCGGG 1 cut(s) 681
Csp6I GTAC 2 cut(s) 55, 349
CviAII CATG 2 cut(s) 104, 746
CviQI GTAC 2 cut(s) 55, 349
DdeI CTNAG 2 cut(s) 636, 720
DpnI GATC 2 cut(s) 662, 750
DpnII GATC 2 cut(s) 660, 748
Eam1104I CTCTTC 2 cut(s) 56, 453
EarI CTCTTC 2 cut(s) 56, 453
Eco31I GGTCTC 2 cut(s) 19, 101
Eco57I CTGAAG 1 cut(s) 309
Eco88I CYCGRG 1 cut(s) 681
EcoRI GAATTC 1 cut(s) 99
EcoRII CCWGG 3 cut(s) 228, 393, 404
EcoT22I ATGCAT 1 cut(s) 747
FaeI CATG 2 cut(s) 107, 749
FaiI YATR 7 cut(s) 105, 126, 134, 308, 503, 594, 747
FatI CATG 2 cut(s) 103, 745
FblI GTMKAC 1 cut(s) 213
Fnu4HI GCNGC 2 cut(s) 40, 171
FokI GGATG 1 cut(s) 786
Fsp4HI GCNGC 2 cut(s) 40, 171
FspBI CTAG 1 cut(s) 597
GlaI GCGC 1 cut(s) 261
GluI GCNGC 2 cut(s) 40, 171
GsuI CTGGAG 3 cut(s) 377, 485, 533
HaeII RGCGCY 1 cut(s) 263
HaeIII GGCC 3 cut(s) 305, 404, 518
HapII CCGG 2 cut(s) 18, 682
HhaI GCGC 1 cut(s) 262
Hin1II CATG 2 cut(s) 107, 749
Hin6I GCGC 1 cut(s) 260
HinP1I GCGC 1 cut(s) 260
HincII GTYRAC 1 cut(s) 712
HindII GTYRAC 1 cut(s) 712
HindIII AAGCTT 1 cut(s) 425
HinfI GANTC 1 cut(s) 215
HpaII CCGG 2 cut(s) 18, 682
Hpy166II GTNNAC 3 cut(s) 214, 248, 712
Hpy188I TCNGA 5 cut(s) 574, 583, 723, 778, 809
Hpy188III TCNNGA 3 cut(s) 104, 416, 550
Hpy8I GTNNAC 3 cut(s) 214, 248, 712
Hpy99I CGWCG 1 cut(s) 52
HpyAV CCTTC 2 cut(s) 236, 726
HpyCH4III ACNGT 3 cut(s) 148, 698, 761
HpyCH4V TGCA 5 cut(s) 86, 136, 177, 298, 745
HpyF10VI GCNNNNNNNGC 7 cut(s) 179, 259, 365, 374, 410, 433, 524
HpyF3I CTNAG 2 cut(s) 636, 720
Hsp92II CATG 2 cut(s) 107, 749
HspAI GCGC 1 cut(s) 260
Kzo9I GATC 2 cut(s) 660, 748
LguI GCTCTTC 1 cut(s) 453
LmnI GCTCC 4 cut(s) 32, 552, 683, 772
Lsp1109I GCAGC 2 cut(s) 51, 182
LweI GCATC 1 cut(s) 714
MaeI CTAG 1 cut(s) 597
MaeIII GTNAC 3 cut(s) 142, 380, 602
MalI GATC 2 cut(s) 662, 750
MboI GATC 2 cut(s) 660, 748
MboII GAAGA 6 cut(s) 73, 325, 470, 599, 670, 743
MhlI GDGCHC 2 cut(s) 82, 769
MluCI AATT 4 cut(s) 99, 137, 282, 471
MlyI GAGTC 1 cut(s) 209
MmeI TCCRAC 2 cut(s) 532, 756
Mph1103I ATGCAT 1 cut(s) 747
MseI TTAA 1 cut(s) 620
MspI CCGG 2 cut(s) 18, 682
MspR9I CCNGG 6 cut(s) 19, 230, 395, 406, 682, 683
MvaI CCWGG 3 cut(s) 230, 395, 406
MvnI CGCG 1 cut(s) 52
MwoI GCNNNNNNNGC 7 cut(s) 179, 259, 365, 374, 410, 433, 524
NciI CCSGG 3 cut(s) 19, 682, 683
NdeII GATC 2 cut(s) 660, 748
NlaIII CATG 2 cut(s) 107, 749
NlaIV GGNNCC 1 cut(s) 548
NmuCI GTSAC 1 cut(s) 380
NsiI ATGCAT 1 cut(s) 747
NspV TTCGAA 1 cut(s) 737
PagI TCATGA 1 cut(s) 103
PciSI GCTCTTC 1 cut(s) 453
PcsI WCGNNNNNNNCGW 1 cut(s) 56
PfoI TCCNGGA 2 cut(s) 17, 393
PkrI GCNGC 2 cut(s) 41, 172
PleI GAGTC 1 cut(s) 209
PpsI GAGTC 1 cut(s) 209
Psp6I CCWGG 3 cut(s) 228, 393, 404
PspGI CCWGG 3 cut(s) 228, 393, 404
PspN4I GGNNCC 1 cut(s) 548
PstI CTGCAG 1 cut(s) 179
PstNI CAGNNNCTG 3 cut(s) 497, 649, 727
RsaI GTAC 2 cut(s) 56, 350
RsaNI GTAC 2 cut(s) 55, 349
SapI GCTCTTC 1 cut(s) 453
SaqAI TTAA 1 cut(s) 620
SatI GCNGC 2 cut(s) 40, 171
Sau3AI GATC 2 cut(s) 660, 748
SchI GAGTC 1 cut(s) 209
ScrFI CCNGG 6 cut(s) 19, 230, 395, 406, 682, 683
SduI GDGCHC 2 cut(s) 82, 769
SetI ASST 9 cut(s) 9, 44, 207, 213, 247, 415, 429, 465, 680
SfaNI GCATC 1 cut(s) 714
SfcI CTRYAG 2 cut(s) 175, 369
SfuI TTCGAA 1 cut(s) 737
SmaI CCCGGG 1 cut(s) 683
SmlI CTYRAG 4 cut(s) 206, 414, 428, 512
SmoI CTYRAG 4 cut(s) 206, 414, 428, 512
Sse9I AATT 4 cut(s) 99, 137, 282, 471
SsiI CCGC 2 cut(s) 11, 52
SspI AATATT 1 cut(s) 186
SspMI CTAG 1 cut(s) 597
StyD4I CCNGG 6 cut(s) 17, 228, 393, 404, 680, 681
TaaI ACNGT 3 cut(s) 148, 698, 761
TaqI TCGA 5 cut(s) 59, 164, 280, 456, 737
TasI AATT 4 cut(s) 99, 137, 282, 471
TatI WGTACW 1 cut(s) 348
Tru1I TTAA 1 cut(s) 620
Tru9I TTAA 1 cut(s) 620
TscAI CASTG 2 cut(s) 703, 766
TseFI GTSAC 1 cut(s) 380
TseI GCWGC 2 cut(s) 39, 170
Tsp45I GTSAC 1 cut(s) 380
TspDTI ATGAA 3 cut(s) 17, 92, 807
TspMI CCCGGG 1 cut(s) 681
TspRI CASTG 2 cut(s) 703, 766
XapI RAATTY 1 cut(s) 99
XcmI CCANNNNNNNNNTGG 2 cut(s) 313, 698
XmaI CCCGGG 1 cut(s) 681
XmiI GTMKAC 1 cut(s) 213
XspI CTAG 1 cut(s) 597
Zsp2I ATGCAT 1 cut(s) 747
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.