Rorug06G0163400

UBX domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0004919
Physical Location & Seq
Forward (+)
23277366 .. 23280887
3522 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0163400.1

Sequence Viewer

Length: 3522 bp
ATGGCAGACTGGGTCTTATCCCCAGCTTTGCAAGTGATCTTTGACAGAATAGCATCCCCTGTCATAGAAAAGTTTGCTGACTTGTGGGATTTCAAGGACAACCTCCAGAGCCTAAAAGAGACCTTGATGCTGATTCAACCTACTCTCGAGGATGCGGAAGAGCAACAATTCTGCAACAAAGCTGTCAAAATTTGGTTGTCAAAGCTCGAGAAGGCAGCTTATGATGCTGAGGACGAACTGCACTACTTGAATGCTAAAGGTATGATCCGTATCAATTGTGTTCAACTTCTTGATCTTAAGACTGCTTCCTACATCAAAGAGATGCTTCAGGCATTAGAAACAACTGTAAATGAGGGACTTATTAAGTTTACTTTTACAAGGCCTAATATGGTAGATCGTCGATCTTCCGTGTGGGAGACTAGCTCTTTTGTCATCAAGTCACAGATATATGGAAGAGATGATGACAAAGATAAGGTCGTGAAACTGTTGCTGTCTTCTCAAGCTTACCAGGAAGGATATGCATCTTGTATCGCAATAGTTGGTATTGGAGGAATTGGTAAGACCACTCTTGCTCAATTAGCATATAATGACGAGAGAGTAATCCAAAACTTCGATGTTAGGGTGTGGATTTATGTCTCTGATGATTTCAATGTCAAGAAGATCATGAAGACAATTATCGAGTCAGTAACGAACGATGAGTGCAGGTTCTCAGACATTGAACTTCTTCAGTCTCAGCTTTGGCGTTTGCTGCACAATAAAAGATACCTCCTCGTGTTGGATGATGTTTGGACTTCGCATCACAATGACTGGGACAAACTAAAACCTTTGTTTAGAGGGGGTGTTGATGGATGCAAAGTCATTGTTACCACCCGCAATACAAAAACCGCACTCATGACAGACTCCCCAAATTCCCCTTTTTATTTGAAGGGCTTAGAGGAGGAGGATTGCTGGGCTTTGTTCAAGCAACAGGCTTTTGGGCGAGGAGAAGAAGAGAAATATCCACACCTTTTGCCAATTGGTAAGCAGATTGTCAGAAAATGTGGAGGTGTGCCATTAGCAGCAAAAAGTTTGGGAAGTATAATGCGCTTCAAAAGAAGTCAACAACAGTGGTTGTCTGTGCAAAATACTGAACTTTGGAAATTGGATGTGTGCGAACTAGACATTCTTCCTGCCCTGATGTTGAGTTACTTTTATCTACCATTTCATCTTAGAAGATGCTTTACCTTCTGCTCAATATTTCCAAAAGGTTATGAATTCAACAAGCACAAGTTAATTCATATGTGGATGGCTGAAGGCTTATTATTGGAAGACGCGAGCAAGCGACCTGAAAATGTTGGTGATGACTATTTCACCAATTTGTTGTGGATGTCTTTCTTTCAAGAAGTAGATCGATGTGATGGTGGAGGTGTGATTTGGTACAAAATGAATGATGTCATTCATGACCTCTCACAGTATGTTGCAGGGAACACAACCATGATACTTGAAAATGGTTTCCAACCAAAGAATTTAGAAAAAATTCGCCACTCCTCTGTTGTTTATAGATATAGAGCAATTACAATTCCACAAGCTCTGTATGAAGCAAAACACCTGCGAAGTCTGTTATTTATTGGAGAATCTGGCTTGATAAAGGACTTTCTTTATAGAATCTCTTCAAGTTTTGAATACTTGCGTACGCTAGATGTGAACAGTTGTGATGTTCATGAATTGCCATATTCAGTGTGCCGCTTAATATGTTTGAGATATCTTGACCTGTCTTACACACCTATATCCACGCTTCCTGATTTCATGGCATGGAAACTCGCGTCTCTGCAGACTTTAAACCTACTTGGTTGCCCTAATCTGAGGCGTTTGCCTGCCTTGGGAGGCATGACAGGCCTAAGACATCTCGATATAACTGCATGCGCAAGTTTGACTCAGATGCCTAAGGGTATTGGAGAACTACATCAACTTGAGACATTGCCATTGTATGTTATTAGCTACAACGGCGAGGCCCATGAGCTGGGTGGTTTGAATCTTTATGGCAGGTTAAATCTCACACACTTGGAAAATGTAACCAAGGCAGTAGAAGCGAAATCAGCAGGATTGAGGATGAAGGAGAATATCGAGTCATTGGGACTATATTGGAGAGGCGAAGATGTGGATGAGTCAATCATGGTAAAACTACCTAAAGCCCAACAAGAAGCAGTCATCTCAGGATCTCAGAGAGTGCCACAGAATTCTGACCCTGTGGAAGAAATTCTTCAATCCTTGAAACCGCACGACAATCTGAAGATGCTAGTTATAAATGGGTATCCAGGAACTAGACTTCCTGATTGGACTCTCCCGAATCTAACTGCAGTTTATTTGAAGGAATGTAGAAACTGTCAGAATCTTCCAGCTCTTGGGAATCTCCTGATGCTTAAAACTCTTTCTCTGCAAGGAATGGATAGTCTGAAACACGTTGGTGCAGATTTCTACGGTGATGGTACCAGCATACCATTCTCGTCACTTCAAGAGTTATCGCTCTGTGATTTATCCAACTTGGAAGAGTGGTCGAGTGCAAATAACATGACTTCATTCCCGAGATTGAGGAAGTTAACCGTTAACAGATGTCCCAAGTTGGCACATATACCATTATCTGAATCTCTTCAACATTTGGAGTTGCGGGGTTGTAAACTACGTTTGATGTCCATAGCAAATTTAAGTTTACTTTCTGTGCTCGTCTTAGAAAATATTCCAGACCTATCCTCTCTCCCACAAGGACTTATTGCATCAGCTCATCTGTCTTGTCTGAAGATTTTGTCATGCCCCAAGCTTCGTTCACTGCCTTTGGAGATGGGAAATTGCCTTACTAGTCTGAAATCATTGACCATTGGTTGGTGTCAAGATCTTTCATCTCTGCCTGAGAGTTTGCAAAACCTCAAAGCCCTGGAATCACTGGAGATTAGTGACTGTCACTACATAATCTCCATGCCCGATGGTGCTATTGGAGGTTTGAGTTCCCTTCGAACTTTGTCCATTGAGAACTGCACTAGTCTGACTTCCTTGTCCTCAAGTTTGGAACATTTGACATTCCTTGAACACTTGACCATTATGTATTGTCCAAGTCTTGATTCTTTTCCAGAGGGTGTGCAACACCTCTCTGCCCTTCGAAGTTTGACTATCCTGAGCTGTCCTTGGTTTGACTCCCTGCCAAATGGCTTACAAAATGTCAGGACACTGCACTGTTTGGAAATTAGTAGCTGCACAAATCTAAGAGCTTTGCCAGAATGGTTTGAGAATCTTGACTCTCTTAGATCCTTGACCATATCTGCTTGTCCTAATTTAGAAGAATTGCCGGCAGGTCTAAAGCATCTCACTAAACTCCAGTACCTCTCTATCCAAGAATGTCCTGAGCTTGAGCAAAGATGCAGACAAGGAAATGGAGAGGATTGGTTCAAAATAGCTCATGTTCCACATAAATACATTGGTTCTCCTCAGGTCAGTCAATCCAGCGAAGCAAGCACCTCAGGCGGATCGTCTTCTCAAACATCTGCTCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PUB UBA

Protein Analysis

1173

Amino Acids

132.42

Weight (kDa)

5.95

Isoelectric Point (pI)

52.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 9 - 80 9.2e-17 Rx N-terminal domain
NB-ARC PF00931 153 - 326 2.5e-39 NB-ARC domain
WHD_DRP PF23559 412 - 482 3.6e-23 Disease resistance protein Winged helix domain
LRR_14 PF23598 529 - 861 2.9e-22 Leucine-rich repeat region
LRR_R13L1-DRL21 PF25019 665 - 808 6.4e-28 R13L1/DRL21 LRRs
LRR_13 PF23286 943 - 1128 1.9e-06 Disease resistance protein RPS4B-like, leucine-rich repeats
LRR_14 PF23598 993 - 1122 3.6e-12 Leucine-rich repeat region
LRR_R13L1-DRL21 PF25019 1060 - 1123 4.9e-07 R13L1/DRL21 LRRs
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2282
AarI CACCTGC 1 cut(s) 1596
AasI GACNNNNNNGTC 1 cut(s) 3025
Acc16I TGCGCA 1 cut(s) 1903
Acc36I ACCTGC 4 cut(s) 693, 1596, 2013, 3311
Acc65I GGTACC 1 cut(s) 2465
AccB1I GGYRCC 1 cut(s) 2465
AccB7I CCANNNNNTGG 3 cut(s) 1999, 2381, 2856
AccII CGCG 2 cut(s) 1313, 1802
AciI CCGC 7 cut(s) 155, 871, 885, 1723, 2255, 2644, 3492
AclWI GGATC 4 cut(s) 259, 2203, 3270, 3502
AcsI RAATTY 8 cut(s) 189, 907, 1253, 1504, 1515, 2215, 2235, 2677
AcuI CTGAAG 5 cut(s) 311, 710, 1311, 2288, 2792
AfaI GTAC 4 cut(s) 1418, 1672, 2467, 3350
AfiI CCNNNNNNNGG 5 cut(s) 775, 1859, 1999, 2381, 2856
AflII CTTAAG 1 cut(s) 296
AflIII ACRYGT 1 cut(s) 2437
AhlI ACTAGT 2 cut(s) 2831, 3011
AjnI CCWGG 3 cut(s) 507, 2293, 2907
AjuI GAANNNNNNNTTGG 2 cut(s) 3076, 3108
AleI CACNNNNGTG 1 cut(s) 2442
AloI GAACNNNNNNTCC 2 cut(s) 2290, 2322
Alw21I GWGCWC 1 cut(s) 2700
Alw26I GTCTC 6 cut(s) 113, 410, 640, 735, 1809, 1946
AlwI GGATC 4 cut(s) 259, 2203, 3270, 3502
Ama87I CYCGRG 3 cut(s) 146, 206, 2560
AoxI GGCC 3 cut(s) 380, 1873, 1989
ApeKI GCWGC 4 cut(s) 215, 748, 1058, 3222
ApoI RAATTY 8 cut(s) 189, 907, 1253, 1504, 1515, 2215, 2235, 2677
ArsI GACNNNNNNTTYG 2 cut(s) 459, 491
Asp700I GAANNNNTTC 7 cut(s) 723, 1515, 1648, 2235, 2238, 2625, 2712
Asp718I GGTACC 1 cut(s) 2465
AspLEI GCGC 2 cut(s) 1086, 1904
AspS9I GGNCC 1 cut(s) 1990
AsuHPI GGTGA 3 cut(s) 1342, 1349, 2471
AsuII TTCGAA 2 cut(s) 2986, 3130
AvaI CYCGRG 3 cut(s) 146, 206, 2560
AxyI CCTNAGG 3 cut(s) 1923, 3456, 3487
BaeI ACNNNNGTAYC 2 cut(s) 3332, 3365
BanI GGYRCC 1 cut(s) 2465
BarI GAAGNNNNNNTAC 2 cut(s) 1204, 1236
BauI CACGAG 1 cut(s) 770
BbsI GAAGAC 4 cut(s) 486, 674, 1314, 3492
Bbv12I GWGCWC 1 cut(s) 2700
BbvCI CCTCAGC 1 cut(s) 228
BbvI GCAGC 4 cut(s) 227, 735, 1070, 3209
BccI CCATC 6 cut(s) 839, 1279, 1391, 2456, 2809, 2951
BceAI ACGGC 1 cut(s) 1999
BcgI CGANNNNNNTGC 2 cut(s) 1877, 1911
BciT130I CCWGG 3 cut(s) 509, 2295, 2909
BciVI GTATCC 1 cut(s) 2301
BcoDI GTCTC 6 cut(s) 113, 410, 640, 735, 1809, 1946
BcuI ACTAGT 2 cut(s) 2831, 3011
BfaI CTAG 7 cut(s) 420, 1157, 1676, 2276, 2301, 2832, 3012
BfmI CTRYAG 2 cut(s) 1808, 2334
BfrI CTTAAG 1 cut(s) 296
BfuAI ACCTGC 4 cut(s) 693, 1596, 2013, 3311
BfuI GTATCC 1 cut(s) 2301
BglII AGATCT 1 cut(s) 2866
BisI GCNGC 5 cut(s) 216, 749, 1059, 1723, 3223
BlsI GCNGC 5 cut(s) 217, 750, 1060, 1724, 3224
Bme1390I CCNGG 3 cut(s) 509, 2295, 2909
BmeT110I CYCGRG 3 cut(s) 146, 206, 2560
BmgT120I GGNCC 1 cut(s) 1990
BmiI GGNNCC 1 cut(s) 2467
BmrFI CCNGG 3 cut(s) 509, 2295, 2909
BmrI ACTGGG 2 cut(s) 19, 817
BmuI ACTGGG 2 cut(s) 19, 817
BpiI GAAGAC 4 cut(s) 486, 674, 1314, 3492
BplI GAGNNNNNCTC 2 cut(s) 407, 439
BpmI CTGGAG 3 cut(s) 89, 2939, 3329
Bpu10I CCTNAGC 3 cut(s) 228, 3146, 3372
Bpu14I TTCGAA 2 cut(s) 2986, 3130
BpuEI CTTGAG 4 cut(s) 483, 1970, 3016, 3398
Bsa29I ATCGAT 1 cut(s) 1390
BsaBI GATNNNNATC 2 cut(s) 269, 520
BsaI GGTCTC 1 cut(s) 113
BsaJI CCNNGG 4 cut(s) 1857, 2055, 2907, 3155
BsaXI ACNNNNNCTCC 2 cut(s) 2930, 2960
Bsc4I CCNNNNNNNGG 5 cut(s) 775, 1859, 1999, 2381, 2856
Bse118I RCCGGY 1 cut(s) 3316
Bse1I ACTGG 4 cut(s) 14, 812, 2922, 3346
Bse21I CCTNAGG 3 cut(s) 1923, 3456, 3487
Bse3DI GCAATG 1 cut(s) 1955
Bse8I GATNNNNATC 2 cut(s) 269, 520
BseBI CCWGG 3 cut(s) 509, 2295, 2909
BseCI ATCGAT 1 cut(s) 1390
BseDI CCNNGG 4 cut(s) 1857, 2055, 2907, 3155
BseGI GGATG 9 cut(s) 53, 157, 784, 854, 1150, 1290, 1371, 2094, 2146
BseJI GATNNNNATC 2 cut(s) 269, 520
BseLI CCNNNNNNNGG 5 cut(s) 775, 1859, 1999, 2381, 2856
BseMI GCAATG 1 cut(s) 1955
BseNI ACTGG 4 cut(s) 14, 812, 2922, 3346
BseRI GAGGAG 6 cut(s) 758, 950, 953, 996, 1516, 3444
BseXI GCAGC 4 cut(s) 227, 735, 1070, 3209
BseYI CCCAGC 3 cut(s) 22, 948, 1999
BsgI GTGCAG 7 cut(s) 224, 721, 734, 2466, 2992, 3185, 3208
Bsh1236I CGCG 2 cut(s) 1313, 1802
BshFI GGCC 3 cut(s) 382, 1875, 1991
BshNI GGYRCC 1 cut(s) 2465
BshVI ATCGAT 1 cut(s) 1390
BsiHKAI GWGCWC 1 cut(s) 2700
BsiHKCI CYCGRG 3 cut(s) 146, 206, 2560
BsiSI CCGG 1 cut(s) 3317
BsiWI CGTACG 1 cut(s) 1670
BslFI GGGAC 4 cut(s) 369, 824, 2127, 2577
BslI CCNNNNNNNGG 5 cut(s) 775, 1859, 1999, 2381, 2856
BsmAI GTCTC 6 cut(s) 113, 410, 640, 735, 1809, 1946
BsmBI CGTCTC 1 cut(s) 1809
BsmFI GGGAC 4 cut(s) 369, 824, 2127, 2577
BsmI GAATGC 1 cut(s) 256
BsnI GGCC 3 cut(s) 382, 1875, 1991
Bso31I GGTCTC 1 cut(s) 113
BsoBI CYCGRG 3 cut(s) 146, 206, 2560
Bsp119I TTCGAA 2 cut(s) 2986, 3130
Bsp1286I GDGCHC 1 cut(s) 2700
BspACI CCGC 7 cut(s) 155, 871, 885, 1723, 2255, 2644, 3492
BspANI GGCC 3 cut(s) 382, 1875, 1991
BspDI ATCGAT 1 cut(s) 1390
BspFNI CGCG 2 cut(s) 1313, 1802
BspHI TCATGA 4 cut(s) 663, 891, 1438, 1699
BspLI GGNNCC 1 cut(s) 2467
BspMAI CTGCAG 2 cut(s) 1812, 2338
BspMI ACCTGC 4 cut(s) 693, 1596, 2013, 3311
BspPI GGATC 4 cut(s) 259, 2203, 3270, 3502
BspQI GCTCTTC 1 cut(s) 153
BspT104I TTCGAA 2 cut(s) 2986, 3130
BspT107I GGYRCC 1 cut(s) 2465
BspTI CTTAAG 1 cut(s) 296
BspTNI GGTCTC 1 cut(s) 113
BsrDI GCAATG 1 cut(s) 1955
BsrFI RCCGGY 1 cut(s) 3316
BsrI ACTGG 4 cut(s) 14, 812, 2922, 3346
BssAI RCCGGY 1 cut(s) 3316
BssECI CCNNGG 4 cut(s) 1857, 2055, 2907, 3155
BssSI CACGAG 1 cut(s) 770
BssT1I CCWWGG 3 cut(s) 1857, 2055, 3155
Bst2BI CACGAG 1 cut(s) 770
Bst2UI CCWGG 3 cut(s) 509, 2295, 2909
Bst6I CTCTTC 6 cut(s) 153, 448, 984, 1654, 2520, 2631
BstAFI CTTAAG 1 cut(s) 296
BstBI TTCGAA 2 cut(s) 2986, 3130
BstC8I GCNNGC 6 cut(s) 1315, 1319, 1854, 1900, 3318, 3481
BstF5I GGATG 9 cut(s) 53, 157, 784, 854, 1150, 1290, 1371, 2094, 2146
BstFNI CGCG 2 cut(s) 1313, 1802
BstHHI GCGC 2 cut(s) 1086, 1904
BstMAI GTCTC 6 cut(s) 113, 410, 640, 735, 1809, 1946
BstMWI GCNNNNNNNGC 9 cut(s) 224, 578, 748, 1872, 1983, 2066, 2075, 3480, 3489
BstNI CCWGG 3 cut(s) 509, 2295, 2909
BstNSI RCATGY 1 cut(s) 1902
BstSCI CCNGG 3 cut(s) 507, 2293, 2907
BstSFI CTRYAG 2 cut(s) 1808, 2334
BstUI CGCG 2 cut(s) 1313, 1802
BstV1I GCAGC 4 cut(s) 227, 735, 1070, 3209
BstV2I GAAGAC 4 cut(s) 486, 674, 1314, 3492
BstX2I RGATCY 3 cut(s) 2195, 2866, 3275
BstYI RGATCY 3 cut(s) 2195, 2866, 3275
Bsu15I ATCGAT 1 cut(s) 1390
Bsu36I CCTNAGG 3 cut(s) 1923, 3456, 3487
BsuI GTATCC 1 cut(s) 2301
BsuRI GGCC 3 cut(s) 382, 1875, 1991
BsuTUI ATCGAT 1 cut(s) 1390
BtsCI GGATG 9 cut(s) 53, 157, 784, 854, 1150, 1290, 1371, 2094, 2146
BtsI GCAGTG 2 cut(s) 2801, 3197
BtsIMutI CAGTG 6 cut(s) 1112, 1722, 2801, 2915, 3197, 3202
BveI ACCTGC 4 cut(s) 693, 1596, 2013, 3311
Cac8I GCNNGC 6 cut(s) 1315, 1319, 1854, 1900, 3318, 3481
CciI TCATGA 4 cut(s) 663, 891, 1438, 1699
CfoI GCGC 2 cut(s) 1086, 1904
Cfr10I RCCGGY 1 cut(s) 3316
Cfr13I GGNCC 1 cut(s) 1990
ClaI ATCGAT 1 cut(s) 1390
CseI GACGC 2 cut(s) 1319, 1791
Csp6I GTAC 4 cut(s) 1417, 1671, 2466, 3349
CspCI CAANNNNNGTGG 4 cut(s) 990, 1025, 1088, 1123
CviQI GTAC 4 cut(s) 1417, 1671, 2466, 3349
DraI TTTAAA 1 cut(s) 1818
DrdI GACNNNNNNGTC 1 cut(s) 3025
DseDI GACNNNNNNGTC 1 cut(s) 3025
Eam1104I CTCTTC 6 cut(s) 153, 448, 984, 1654, 2520, 2631
EarI CTCTTC 6 cut(s) 153, 448, 984, 1654, 2520, 2631
EciI GGCGGA 1 cut(s) 3507
Eco130I CCWWGG 3 cut(s) 1857, 2055, 3155
Eco147I AGGCCT 2 cut(s) 382, 1875
Eco31I GGTCTC 1 cut(s) 113
Eco32I GATATC 1 cut(s) 1742
Eco57I CTGAAG 5 cut(s) 311, 710, 1311, 2288, 2792
Eco81I CCTNAGG 3 cut(s) 1923, 3456, 3487
Eco88I CYCGRG 3 cut(s) 146, 206, 2560
EcoRI GAATTC 2 cut(s) 1253, 2215
EcoRII CCWGG 3 cut(s) 507, 2293, 2907
EcoRV GATATC 1 cut(s) 1742
EcoT14I CCWWGG 3 cut(s) 1857, 2055, 3155
EcoT22I ATGCAT 1 cut(s) 523
ErhI CCWWGG 3 cut(s) 1857, 2055, 3155
Esp3I CGTCTC 1 cut(s) 1809
FalI AAGNNNNNCTT 4 cut(s) 309, 341, 2223, 2255
FaqI GGGAC 4 cut(s) 369, 824, 2127, 2577
FauI CCCGC 2 cut(s) 878, 2637
FauNDI CATATG 1 cut(s) 1278
Fnu4HI GCNGC 5 cut(s) 216, 749, 1059, 1723, 3223
FokI GGATG 9 cut(s) 40, 164, 791, 861, 1157, 1297, 1378, 2101, 2153
Fsp4HI GCNGC 5 cut(s) 216, 749, 1059, 1723, 3223
FspBI CTAG 7 cut(s) 420, 1157, 1676, 2276, 2301, 2832, 3012
FspI TGCGCA 1 cut(s) 1903
GlaI GCGC 2 cut(s) 1085, 1903
GluI GCNGC 5 cut(s) 216, 749, 1059, 1723, 3223
GsaI CCCAGC 3 cut(s) 26, 952, 2003
GsuI CTGGAG 3 cut(s) 89, 2939, 3329
HaeIII GGCC 3 cut(s) 382, 1875, 1991
HapII CCGG 1 cut(s) 3317
HgaI GACGC 2 cut(s) 1319, 1791
HhaI GCGC 2 cut(s) 1086, 1904
Hin6I GCGC 2 cut(s) 1084, 1902
HinP1I GCGC 2 cut(s) 1084, 1902
HincII GTYRAC 3 cut(s) 1100, 2577, 2584
HindII GTYRAC 3 cut(s) 1100, 2577, 2584
HindIII AAGCTT 2 cut(s) 501, 2792
HpaI GTTAAC 2 cut(s) 2577, 2584
HpaII CCGG 1 cut(s) 3317
HphI GGTGA 3 cut(s) 1342, 1349, 2471
Hpy166II GTNNAC 8 cut(s) 369, 1100, 1684, 2577, 2584, 2654, 2687, 2801
Hpy8I GTNNAC 8 cut(s) 369, 1100, 1684, 2577, 2584, 2654, 2687, 2801
Hpy99I CGWCG 1 cut(s) 402
HpyAV CCTTC 9 cut(s) 205, 506, 919, 1234, 1286, 2086, 2341, 2993, 3137
HpyCH4IV ACGT 2 cut(s) 2439, 2659
HpyF10VI GCNNNNNNNGC 9 cut(s) 224, 578, 748, 1872, 1983, 2066, 2075, 3480, 3489
HpySE526I ACGT 2 cut(s) 2439, 2659
HspAI GCGC 2 cut(s) 1084, 1902
KpnI GGTACC 1 cut(s) 2469
KroI GCCGGC 1 cut(s) 3316
KroNI GCCGGC 1 cut(s) 3318
KspAI GTTAAC 2 cut(s) 2577, 2584
LguI GCTCTTC 1 cut(s) 153
Lsp1109I GCAGC 4 cut(s) 227, 735, 1070, 3209
MaeI CTAG 7 cut(s) 420, 1157, 1676, 2276, 2301, 2832, 3012
MaeII ACGT 2 cut(s) 2439, 2659
MaeIII GTNAC 8 cut(s) 438, 685, 862, 1184, 2050, 2484, 2927, 2933
MfeI CAATTG 2 cut(s) 274, 1014
MflI RGATCY 3 cut(s) 2195, 2866, 3275
MhlI GDGCHC 1 cut(s) 2700
MlyI GAGTC 8 cut(s) 689, 893, 1906, 2114, 2153, 2311, 3158, 3260
MmeI TCCRAC 3 cut(s) 756, 1519, 2541
Mph1103I ATGCAT 1 cut(s) 523
MroNI GCCGGC 1 cut(s) 3316
MroXI GAANNNNTTC 7 cut(s) 723, 1515, 1648, 2235, 2238, 2625, 2712
MslI CAYNNNNRTG 3 cut(s) 801, 1472, 2442
MspCI CTTAAG 1 cut(s) 296
MspI CCGG 1 cut(s) 3317
MspR9I CCNGG 3 cut(s) 509, 2295, 2909
MunI CAATTG 2 cut(s) 274, 1014
Mva1269I GAATGC 1 cut(s) 256
MvaI CCWGG 3 cut(s) 509, 2295, 2909
MvnI CGCG 2 cut(s) 1313, 1802
MwoI GCNNNNNNNGC 9 cut(s) 224, 578, 748, 1872, 1983, 2066, 2075, 3480, 3489
NaeI GCCGGC 1 cut(s) 3318
NdeI CATATG 1 cut(s) 1278
NgoMIV GCCGGC 1 cut(s) 3316
NlaIV GGNNCC 1 cut(s) 2467
NmuCI GTSAC 4 cut(s) 438, 2484, 2927, 2933
NsbI TGCGCA 1 cut(s) 1903
NsiI ATGCAT 1 cut(s) 523
NspI RCATGY 1 cut(s) 1902
NspV TTCGAA 2 cut(s) 2986, 3130
OliI CACNNNNGTG 1 cut(s) 2442
PaeI GCATGC 1 cut(s) 1902
PaeR7I CTCGAG 2 cut(s) 146, 206
PagI TCATGA 4 cut(s) 663, 891, 1438, 1699
PaqCI CACCTGC 1 cut(s) 1596
PceI AGGCCT 2 cut(s) 382, 1875
PciSI GCTCTTC 1 cut(s) 153
PctI GAATGC 1 cut(s) 256
PdiI GCCGGC 1 cut(s) 3318
PdmI GAANNNNTTC 7 cut(s) 723, 1515, 1648, 2235, 2238, 2625, 2712
Pfl23II CGTACG 1 cut(s) 1670
PflFI GACNNNGTC 1 cut(s) 11
PflMI CCANNNNNTGG 3 cut(s) 1999, 2381, 2856
PfoI TCCNGGA 1 cut(s) 2293
PkrI GCNGC 5 cut(s) 217, 750, 1060, 1724, 3224
PleI GAGTC 8 cut(s) 688, 893, 1906, 2113, 2152, 2311, 3158, 3260
PpsI GAGTC 8 cut(s) 688, 893, 1906, 2113, 2152, 2311, 3158, 3260
PsiI TTATAA 1 cut(s) 2282
Psp6I CCWGG 3 cut(s) 507, 2293, 2907
PspFI CCCAGC 3 cut(s) 22, 948, 1999
PspGI CCWGG 3 cut(s) 507, 2293, 2907
PspLI CGTACG 1 cut(s) 1670
PspN4I GGNNCC 1 cut(s) 2467
PspPI GGNCC 1 cut(s) 1990
PstI CTGCAG 2 cut(s) 1812, 2338
PsuI RGATCY 3 cut(s) 2195, 2866, 3275
PsyI GACNNNGTC 1 cut(s) 11
RsaI GTAC 4 cut(s) 1418, 1672, 2467, 3350
RsaNI GTAC 4 cut(s) 1417, 1671, 2466, 3349
RseI CAYNNNNRTG 3 cut(s) 801, 1472, 2442
SapI GCTCTTC 1 cut(s) 153
SatI GCNGC 5 cut(s) 216, 749, 1059, 1723, 3223
Sau96I GGNCC 1 cut(s) 1990
SchI GAGTC 8 cut(s) 689, 893, 1906, 2114, 2153, 2311, 3158, 3260
ScrFI CCNGG 3 cut(s) 509, 2295, 2909
SduI GDGCHC 1 cut(s) 2700
SfcI CTRYAG 2 cut(s) 1808, 2334
Sfr274I CTCGAG 2 cut(s) 146, 206
SfuI TTCGAA 2 cut(s) 2986, 3130
SlaI CTCGAG 2 cut(s) 146, 206
SmiMI CAYNNNNRTG 3 cut(s) 801, 1472, 2442
SmlI CTYRAG 7 cut(s) 146, 206, 296, 498, 1949, 3031, 3377
SmoI CTYRAG 7 cut(s) 146, 206, 296, 498, 1949, 3031, 3377
SpeI ACTAGT 2 cut(s) 2831, 3011
SphI GCATGC 1 cut(s) 1902
SseBI AGGCCT 2 cut(s) 382, 1875
SsiI CCGC 7 cut(s) 155, 871, 885, 1723, 2255, 2644, 3492
SspI AATATT 2 cut(s) 1236, 2713
SspMI CTAG 7 cut(s) 420, 1157, 1676, 2276, 2301, 2832, 3012
StuI AGGCCT 2 cut(s) 382, 1875
StyD4I CCNGG 3 cut(s) 507, 2293, 2907
StyI CCWWGG 3 cut(s) 1857, 2055, 3155
TaiI ACGT 2 cut(s) 2442, 2662
TauI GCSGC 1 cut(s) 1725
TscAI CASTG 6 cut(s) 1112, 1722, 2808, 2922, 3204, 3209
TseFI GTSAC 4 cut(s) 438, 2484, 2927, 2933
TseI GCWGC 4 cut(s) 215, 748, 1058, 3222
Tsp45I GTSAC 4 cut(s) 438, 2484, 2927, 2933
TspGWI ACGGA 2 cut(s) 257, 397
TspRI CASTG 6 cut(s) 1112, 1722, 2808, 2922, 3204, 3209
Tth111I GACNNNGTC 1 cut(s) 11
Van91I CCANNNNNTGG 3 cut(s) 1999, 2381, 2856
Vha464I CTTAAG 1 cut(s) 296
XapI RAATTY 8 cut(s) 189, 907, 1253, 1504, 1515, 2215, 2235, 2677
XceI RCATGY 1 cut(s) 1902
XcmI CCANNNNNNNNNTGG 1 cut(s) 2000
XhoI CTCGAG 2 cut(s) 146, 206
XmnI GAANNNNTTC 7 cut(s) 723, 1515, 1648, 2235, 2238, 2625, 2712
XspI CTAG 7 cut(s) 420, 1157, 1676, 2276, 2301, 2832, 3012
Zsp2I ATGCAT 1 cut(s) 523
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.