Rorug06G0163100

UBX domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0004919
Physical Location & Seq
Forward (+)
23251773 .. 23252432
660 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0163100.1

Sequence Viewer

Length: 660 bp
ATGGCAGACCTAGTTTTGTCCCCTGCTTTGCAAGTGATCTTTGATAGGCTGTCATCCCCTGTCCTACAAAAGGTTGCTGATATGTGGGAGCTCAAGGACAACCTACAAAGCCTGCATGAGGCCCTGATGCTGATTCAACCTACTCTCGAAGACGCCGAAGAACGACAGTTCACCAATAAAGCTGTCAGACTCTGGTTGTCAAAGCTCAAGAATGCAACTTATGATGCTGAGGACGATCTGGACTACTTGACTGCTAAAGGAATGATAAGGAGTTCTATCTATAAGTTTTCATTTGAAGAACTTATGAGTGCTACTAAAGATCGTACAAACGCTACTCAAATTAGTGCCATGCTTCAGGAGCTAGAGAAAACTGTGACTGAAGGACTCCTCAAGTTTAATGTTAAAGCAGGGCCGGCTAGAATGATAGATCGACATTCTGCCATAAGGGAAACTAGCTCTTTTGTGATCCAGTCAGAGATATATGGAAGAGACGATGAGAAAGACAAGTTAGTCCAACTGTTATTATCTTCTGATGAAGCTTTCCAGGAAGGATATGCAACTTGTATTCCAATAATAGGTATTGGAGGAATTGGTAAGACCACTCTTGCTCAGTTGGCATATAATGATAAAAGGGTAATTAATCCAACACTTCGATATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PUB UBA

Protein Analysis

219

Amino Acids

24.73

Weight (kDa)

5.1

Isoelectric Point (pI)

44.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 8 - 88 4.2e-18 Rx N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 509
AclWI GGATC 1 cut(s) 460
AcuI CTGAAG 2 cut(s) 338, 399
AcyI GRCGYC 1 cut(s) 153
AfaI GTAC 1 cut(s) 325
AfiI CCNNNNNNNGG 3 cut(s) 70, 118, 575
AgsI TTSAA 2 cut(s) 137, 296
AjnI CCWGG 1 cut(s) 543
AluBI AGCT 6 cut(s) 91, 182, 205, 361, 456, 539
AluI AGCT 6 cut(s) 91, 182, 205, 361, 456, 539
Alw21I GWGCWC 1 cut(s) 93
Alw26I GTCTC 1 cut(s) 483
AlwI GGATC 1 cut(s) 460
AlwNI CAGNNNCTG 1 cut(s) 192
AoxI GGCC 2 cut(s) 120, 410
AseI ATTAAT 1 cut(s) 639
AspS9I GGNCC 2 cut(s) 121, 410
AsuHPI GGTGA 1 cut(s) 163
BanII GRGCYC 1 cut(s) 93
BbsI GAAGAC 1 cut(s) 156
Bbv12I GWGCWC 1 cut(s) 93
BbvCI CCTCAGC 1 cut(s) 228
BciT130I CCWGG 1 cut(s) 545
BcoDI GTCTC 1 cut(s) 483
BfaI CTAG 4 cut(s) 11, 362, 417, 453
Bme1390I CCNGG 1 cut(s) 545
BmgT120I GGNCC 2 cut(s) 121, 410
BmrFI CCNGG 1 cut(s) 545
BmsI GCATC 2 cut(s) 117, 214
BpiI GAAGAC 1 cut(s) 156
Bpu10I CCTNAGC 1 cut(s) 228
BpuEI CTTGAG 3 cut(s) 77, 191, 374
BsaHI GRCGYC 1 cut(s) 153
Bsc4I CCNNNNNNNGG 3 cut(s) 70, 118, 575
Bse118I RCCGGY 1 cut(s) 412
Bse1I ACTGG 1 cut(s) 469
BseBI CCWGG 1 cut(s) 545
BseGI GGATG 1 cut(s) 53
BseLI CCNNNNNNNGG 3 cut(s) 70, 118, 575
BseMII CTCAG 2 cut(s) 219, 623
BseNI ACTGG 1 cut(s) 469
BseRI GAGGAG 1 cut(s) 377
BshFI GGCC 2 cut(s) 122, 412
BsiHKAI GWGCWC 1 cut(s) 93
BsiSI CCGG 1 cut(s) 413
BslFI GGGAC 1 cut(s) 4
BslI CCNNNNNNNGG 3 cut(s) 70, 118, 575
BsmAI GTCTC 1 cut(s) 483
BsmBI CGTCTC 1 cut(s) 483
BsmFI GGGAC 1 cut(s) 4
BsmI GAATGC 1 cut(s) 217
BsnI GGCC 2 cut(s) 122, 412
Bsp1286I GDGCHC 1 cut(s) 93
Bsp143I GATC 5 cut(s) 36, 235, 319, 427, 465
BspANI GGCC 2 cut(s) 122, 412
BspCNI CTCAG 2 cut(s) 220, 622
BspPI GGATC 1 cut(s) 460
BsrFI RCCGGY 1 cut(s) 412
BsrI ACTGG 1 cut(s) 469
BssAI RCCGGY 1 cut(s) 412
BssMI GATC 5 cut(s) 36, 235, 319, 427, 465
BssNI GRCGYC 1 cut(s) 153
Bst2UI CCWGG 1 cut(s) 545
Bst4CI ACNGT 3 cut(s) 168, 373, 519
Bst6I CTCTTC 1 cut(s) 481
BstACI GRCGYC 1 cut(s) 153
BstC8I GCNNGC 2 cut(s) 113, 414
BstDEI CTNAG 2 cut(s) 228, 609
BstENI CCTNNNNNAGG 2 cut(s) 68, 116
BstF5I GGATG 1 cut(s) 53
BstKTI GATC 5 cut(s) 39, 238, 322, 430, 468
BstMAI GTCTC 1 cut(s) 483
BstMBI GATC 5 cut(s) 36, 235, 319, 427, 465
BstMWI GCNNNNNNNGC 3 cut(s) 358, 413, 614
BstNI CCWGG 1 cut(s) 545
BstSCI CCNGG 1 cut(s) 543
BstV2I GAAGAC 1 cut(s) 156
BsuRI GGCC 2 cut(s) 122, 412
BtsCI GGATG 1 cut(s) 53
Cac8I GCNNGC 2 cut(s) 113, 414
CaiI CAGNNNCTG 1 cut(s) 192
Cfr10I RCCGGY 1 cut(s) 412
Cfr13I GGNCC 2 cut(s) 121, 410
CseI GACGC 1 cut(s) 161
Csp6I GTAC 1 cut(s) 324
CviAII CATG 2 cut(s) 116, 349
CviQI GTAC 1 cut(s) 324
DdeI CTNAG 2 cut(s) 228, 609
DpnI GATC 5 cut(s) 38, 237, 321, 429, 467
DpnII GATC 5 cut(s) 36, 235, 319, 427, 465
DrdI GACNNNNNNGTC 1 cut(s) 509
DseDI GACNNNNNNGTC 1 cut(s) 509
Eam1104I CTCTTC 1 cut(s) 481
EarI CTCTTC 1 cut(s) 481
Ecl136II GAGCTC 1 cut(s) 91
Eco24I GRGCYC 1 cut(s) 93
Eco53kI GAGCTC 1 cut(s) 91
Eco57I CTGAAG 2 cut(s) 338, 399
EcoICRI GAGCTC 1 cut(s) 91
EcoNI CCTNNNNNAGG 2 cut(s) 68, 116
EcoO109I RGGNCCY 1 cut(s) 121
EcoRII CCWGG 1 cut(s) 543
EcoT38I GRGCYC 1 cut(s) 93
Esp3I CGTCTC 1 cut(s) 483
FaeI CATG 2 cut(s) 119, 352
FaqI GGGAC 1 cut(s) 4
FatI CATG 2 cut(s) 115, 348
FokI GGATG 1 cut(s) 40
FriOI GRGCYC 1 cut(s) 93
FspBI CTAG 4 cut(s) 11, 362, 417, 453
HaeIII GGCC 2 cut(s) 122, 412
HapII CCGG 1 cut(s) 413
HgaI GACGC 1 cut(s) 161
Hin1I GRCGYC 1 cut(s) 153
Hin1II CATG 2 cut(s) 119, 352
HindIII AAGCTT 1 cut(s) 537
HinfI GANTC 3 cut(s) 133, 189, 384
HpaII CCGG 1 cut(s) 413
HphI GGTGA 1 cut(s) 163
Hpy166II GTNNAC 1 cut(s) 171
Hpy188I TCNGA 3 cut(s) 188, 475, 532
Hpy188III TCNNGA 4 cut(s) 146, 208, 239, 356
Hpy8I GTNNAC 1 cut(s) 171
HpyAV CCTTC 2 cut(s) 374, 542
HpyCH4III ACNGT 3 cut(s) 168, 373, 519
HpyCH4V TGCA 4 cut(s) 31, 115, 215, 557
HpyF10VI GCNNNNNNNGC 3 cut(s) 358, 413, 614
HpyF3I CTNAG 2 cut(s) 228, 609
Hsp92I GRCGYC 1 cut(s) 153
Hsp92II CATG 2 cut(s) 119, 352
KroI GCCGGC 1 cut(s) 412
KroNI GCCGGC 1 cut(s) 414
Kzo9I GATC 5 cut(s) 36, 235, 319, 427, 465
LmnI GCTCC 2 cut(s) 88, 358
LweI GCATC 2 cut(s) 117, 214
MaeI CTAG 4 cut(s) 11, 362, 417, 453
MaeIII GTNAC 1 cut(s) 373
MalI GATC 5 cut(s) 38, 237, 321, 429, 467
MboI GATC 5 cut(s) 36, 235, 319, 427, 465
MboII GAAGA 5 cut(s) 161, 170, 308, 498, 519
MhlI GDGCHC 1 cut(s) 93
MluCI AATT 3 cut(s) 339, 588, 636
MlyI GAGTC 2 cut(s) 183, 378
MmeI TCCRAC 1 cut(s) 538
MnlI CCTC 4 cut(s) 112, 223, 398, 578
MroNI GCCGGC 1 cut(s) 412
MseI TTAA 3 cut(s) 396, 402, 639
MspI CCGG 1 cut(s) 413
MspR9I CCNGG 1 cut(s) 545
Mva1269I GAATGC 1 cut(s) 217
MvaI CCWGG 1 cut(s) 545
MwoI GCNNNNNNNGC 3 cut(s) 358, 413, 614
NaeI GCCGGC 1 cut(s) 414
NdeII GATC 5 cut(s) 36, 235, 319, 427, 465
NgoMIV GCCGGC 1 cut(s) 412
NlaIII CATG 2 cut(s) 119, 352
NmuCI GTSAC 1 cut(s) 373
PcsI WCGNNNNNNNCGW 1 cut(s) 153
PctI GAATGC 1 cut(s) 217
PdiI GCCGGC 1 cut(s) 414
PfeI GAWTC 1 cut(s) 133
PfoI TCCNGGA 1 cut(s) 543
PleI GAGTC 2 cut(s) 183, 378
PpsI GAGTC 2 cut(s) 183, 378
PshBI ATTAAT 1 cut(s) 639
Psp124BI GAGCTC 1 cut(s) 93
Psp6I CCWGG 1 cut(s) 543
PspGI CCWGG 1 cut(s) 543
PspPI GGNCC 2 cut(s) 121, 410
PstNI CAGNNNCTG 1 cut(s) 192
RsaI GTAC 1 cut(s) 325
RsaNI GTAC 1 cut(s) 324
SacI GAGCTC 1 cut(s) 93
SaqAI TTAA 3 cut(s) 396, 402, 639
Sau3AI GATC 5 cut(s) 36, 235, 319, 427, 465
Sau96I GGNCC 2 cut(s) 121, 410
SchI GAGTC 2 cut(s) 183, 378
ScrFI CCNGG 1 cut(s) 545
SduI GDGCHC 1 cut(s) 93
SfaNI GCATC 2 cut(s) 117, 214
SmlI CTYRAG 3 cut(s) 92, 206, 389
SmoI CTYRAG 3 cut(s) 92, 206, 389
Sse9I AATT 3 cut(s) 339, 588, 636
SspMI CTAG 4 cut(s) 11, 362, 417, 453
SstI GAGCTC 1 cut(s) 93
StyD4I CCNGG 1 cut(s) 543
TaaI ACNGT 3 cut(s) 168, 373, 519
TaqI TCGA 3 cut(s) 147, 430, 652
TasI AATT 3 cut(s) 339, 588, 636
TfiI GAWTC 1 cut(s) 133
Tru1I TTAA 3 cut(s) 396, 402, 639
Tru9I TTAA 3 cut(s) 396, 402, 639
TseFI GTSAC 1 cut(s) 373
Tsp45I GTSAC 1 cut(s) 373
TspDTI ATGAA 2 cut(s) 279, 549
VspI ATTAAT 1 cut(s) 639
XagI CCTNNNNNAGG 2 cut(s) 68, 116
XspI CTAG 4 cut(s) 11, 362, 417, 453
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.