Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0004919

Physical Location & Seq

Genomic Coordinates Forward (+)

49740073 .. 49743252

Gene Structure 3180 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG276300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGGCTGTTCCTCGAGTAAACAAGAAATTGCTTCAAGAGCTTGAATCAATGGGATTTCCCACAGCTCGGGCAACTCGGGCTCTTCATTATTCAGGTACTGCTAGCTTAGAGGCTTGTATAGACTGGATCATTGATCACGATAATGACCCGGACATTGATCAGATGCCCTTGTTAGAAAGAAGAGTTAAGCTTGGATTGCCACCAGGACACACAGCATCTGCGAAACTTTCTACACCTGTGAGGTGGGAAATCCAGAAATCATTGCCCGTCCAATCTGTTGCAAAGTCAGAACATATAAGAGAGTGTTTAAGGTCTCTGAGGCGCAACCACAAGGATGATGATGCTAGAGTACGACAAGCCTTCCAAACTCTGCTGATTTATGTTGGAAATGTTGCAAAGAATCCCGATCAAGAAAAATTCCGGAAGATTAGACTCGGTAATCCATCATTCTTGGATAGAGTTGGAAGTTTGATTGGAGGAATAGAGTTTCTTGAGCTCTGTGGGTTTGAGAGAACTGAAGCAGGAGAGTTCTTGTATCTTCCTCGTGATAAGGTTGACATGGCCACATTATACTCCGCTGCTTCTGAACTGAAGTCTGCATTGACAAACCCTTTCTTTGGCCTTCTGTCTAGAGATGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PUB UBA

Protein Analysis

213

Amino Acids

24.0

Weight (kDa)

8.43

Isoelectric Point (pI)

50.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UBA_7	PF22562	7 - 54	2e-16	UBA-like domain
PUB	PF09409	116 - 186	8e-21	PUB domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004919)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48690 AT5G48690 AT5G48690
fragaria_vesca	FvH4_2g18750 FvH4_2g18750
malus_domestica	MD05G1173000.v1.1
prunus_persica	Prupe.8G200600_v2.0.a1 Prupe.8G200600_v2.0.a1 Prupe.8G200600_v2.0.a1 Prupe.8G200600_v2.0.a1 Prupe.8G200600_v2.0.a1
pyrus_communis	pycom05g15970
rosa_chinensis	RchiOBHm_Chr6g0284421 RchiOBHm_Chr6g0284441
rosa_laevigata	RLG00000012745
rosa_multiflora	Rmu_sc0005959.1_g000001 Rmu_sc0032923.1_g000001
rosa_roxburghii	Rroxscaffold_7G00184710
rosa_rugosa	Rorug06G0163100 Rorug06G0163200 Rorug06G0163300 Rorug06G0163400 Rorug06G0163500 Rorug06G0163600 Rorug06G0163700
rosa_samantha	Rh6AG275900 Rh6BG276300 Rh6CG278300 Rh6CG278400
rosa_wichuraiana	Rw6G023740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	420
AciI	CCGC	1 cut(s)	576
AclWI	GGATC	1 cut(s)	134
AcoI	YGGCCR	1 cut(s)	561
AcsI	RAATTY	1 cut(s)	416
AcuI	CTGAAG	2 cut(s)	537, 611
AfaI	GTAC	2 cut(s)	97, 351
AfiI	CCNNNNNNNGG	2 cut(s)	66, 617
AgsI	TTSAA	2 cut(s)	35, 44
AjnI	CCWGG	1 cut(s)	202
AluBI	AGCT	5 cut(s)	40, 65, 105, 190, 496
AluI	AGCT	5 cut(s)	40, 65, 105, 190, 496
Alw21I	GWGCWC	1 cut(s)	498
Alw26I	GTCTC	1 cut(s)	318
AlwI	GGATC	1 cut(s)	134
AlwNI	CAGNNNCTG	2 cut(s)	98, 218
Ama87I	CYCGRG	3 cut(s)	12, 66, 75
Aor13HI	TCCGGA	1 cut(s)	420
AoxI	GGCC	2 cut(s)	561, 619
ApeKI	GCWGC	1 cut(s)	578
ApoI	RAATTY	1 cut(s)	416
AspLEI	GCGC	1 cut(s)	324
AsuC2I	CCSGG	1 cut(s)	149
AsuNHI	GCTAGC	1 cut(s)	101
AvaI	CYCGRG	3 cut(s)	12, 66, 75
BalI	TGGCCA	1 cut(s)	563
BanII	GRGCYC	2 cut(s)	82, 498
BauI	CACGAG	1 cut(s)	543
Bbv12I	GWGCWC	1 cut(s)	498
BbvI	GCAGC	1 cut(s)	565
BccI	CCATC	1 cut(s)	451
BciT130I	CCWGG	1 cut(s)	204
BclI	TGATCA	2 cut(s)	133, 157
BcnI	CCSGG	1 cut(s)	149
BcoDI	GTCTC	1 cut(s)	318
BfaI	CTAG	3 cut(s)	102, 345, 630
BisI	GCNGC	1 cut(s)	579
BlsI	GCNGC	1 cut(s)	580
Bme1390I	CCNGG	2 cut(s)	149, 204
BmeT110I	CYCGRG	3 cut(s)	12, 66, 75
BmrFI	CCNGG	2 cut(s)	149, 204
BmsI	GCATC	3 cut(s)	153, 224, 331
BmtI	GCTAGC	1 cut(s)	105
BpuEI	CTTGAG	1 cut(s)	512
BpuMI	CCSGG	1 cut(s)	149
BsaI	GGTCTC	1 cut(s)	318
BsaWI	WCCGGW	1 cut(s)	420
Bsc4I	CCNNNNNNNGG	2 cut(s)	66, 617
Bse1I	ACTGG	1 cut(s)	128
Bse3DI	GCAATG	1 cut(s)	260
BseAI	TCCGGA	1 cut(s)	420
BseBI	CCWGG	1 cut(s)	204
BseGI	GGATG	1 cut(s)	340
BseLI	CCNNNNNNNGG	2 cut(s)	66, 617
BseMI	GCAATG	1 cut(s)	260
BseMII	CTCAG	1 cut(s)	308
BseNI	ACTGG	1 cut(s)	128
BseXI	GCAGC	1 cut(s)	565
BshFI	GGCC	2 cut(s)	563, 621
BsiHKAI	GWGCWC	1 cut(s)	498
BsiHKCI	CYCGRG	3 cut(s)	12, 66, 75
BsiSI	CCGG	2 cut(s)	149, 421
BslI	CCNNNNNNNGG	2 cut(s)	66, 617
BsmAI	GTCTC	1 cut(s)	318
BsnI	GGCC	2 cut(s)	563, 621
Bso31I	GGTCTC	1 cut(s)	318
BsoBI	CYCGRG	3 cut(s)	12, 66, 75
Bsp1286I	GDGCHC	2 cut(s)	82, 498
Bsp13I	TCCGGA	1 cut(s)	420
Bsp143I	GATC	4 cut(s)	126, 133, 157, 406
BspACI	CCGC	1 cut(s)	576
BspANI	GGCC	2 cut(s)	563, 621
BspCNI	CTCAG	1 cut(s)	309
BspEI	TCCGGA	1 cut(s)	420
BspOI	GCTAGC	1 cut(s)	105
BspPI	GGATC	1 cut(s)	134
BspQI	GCTCTTC	1 cut(s)	87
BspTNI	GGTCTC	1 cut(s)	318
BsrDI	GCAATG	1 cut(s)	260
BsrI	ACTGG	1 cut(s)	128
BssMI	GATC	4 cut(s)	126, 133, 157, 406
BssSI	CACGAG	1 cut(s)	543
Bst2BI	CACGAG	1 cut(s)	543
Bst2UI	CCWGG	1 cut(s)	204
Bst6I	CTCTTC	2 cut(s)	87, 175
BstC8I	GCNNGC	1 cut(s)	103
BstDEI	CTNAG	2 cut(s)	106, 317
BstF5I	GGATG	1 cut(s)	340
BstHHI	GCGC	1 cut(s)	324
BstKTI	GATC	4 cut(s)	129, 136, 160, 409
BstMAI	GTCTC	1 cut(s)	318
BstMBI	GATC	4 cut(s)	126, 133, 157, 406
BstMWI	GCNNNNNNNGC	3 cut(s)	37, 77, 196
BstNI	CCWGG	1 cut(s)	204
BstSCI	CCNGG	2 cut(s)	147, 202
BstV1I	GCAGC	1 cut(s)	565
BsuRI	GGCC	2 cut(s)	563, 621
BtsCI	GGATG	1 cut(s)	340
Cac8I	GCNNGC	1 cut(s)	103
CaiI	CAGNNNCTG	2 cut(s)	98, 218
CfoI	GCGC	1 cut(s)	324
Csp6I	GTAC	2 cut(s)	96, 350
CviAII	CATG	1 cut(s)	559
CviQI	GTAC	2 cut(s)	96, 350
DdeI	CTNAG	2 cut(s)	106, 317
DpnI	GATC	4 cut(s)	128, 135, 159, 408
DpnII	GATC	4 cut(s)	126, 133, 157, 406
EaeI	YGGCCR	1 cut(s)	561
Eam1104I	CTCTTC	2 cut(s)	87, 175
EarI	CTCTTC	2 cut(s)	87, 175
Ecl136II	GAGCTC	1 cut(s)	496
Eco24I	GRGCYC	2 cut(s)	82, 498
Eco31I	GGTCTC	1 cut(s)	318
Eco53kI	GAGCTC	1 cut(s)	496
Eco57I	CTGAAG	2 cut(s)	537, 611
Eco88I	CYCGRG	3 cut(s)	12, 66, 75
EcoICRI	GAGCTC	1 cut(s)	496
EcoRII	CCWGG	1 cut(s)	202
EcoT38I	GRGCYC	2 cut(s)	82, 498
FaeI	CATG	1 cut(s)	562
FaiI	YATR	6 cut(s)	119, 294, 296, 381, 560, 571
FatI	CATG	1 cut(s)	558
FbaI	TGATCA	2 cut(s)	133, 157
Fnu4HI	GCNGC	1 cut(s)	579
FokI	GGATG	1 cut(s)	347
FriOI	GRGCYC	2 cut(s)	82, 498
Fsp4HI	GCNGC	1 cut(s)	579
FspBI	CTAG	3 cut(s)	102, 345, 630
GlaI	GCGC	1 cut(s)	323
GluI	GCNGC	1 cut(s)	579
HaeIII	GGCC	2 cut(s)	563, 621
HapII	CCGG	2 cut(s)	149, 421
HhaI	GCGC	1 cut(s)	324
Hin1II	CATG	1 cut(s)	562
Hin6I	GCGC	1 cut(s)	322
HinP1I	GCGC	1 cut(s)	322
HincII	GTYRAC	1 cut(s)	556
HindII	GTYRAC	1 cut(s)	556
HindIII	AAGCTT	1 cut(s)	188
HinfI	GANTC	3 cut(s)	44, 400, 432
HpaII	CCGG	2 cut(s)	149, 421
Hpy166II	GTNNAC	2 cut(s)	19, 556
Hpy188I	TCNGA	4 cut(s)	162, 289, 318, 586
Hpy188III	TCNNGA	9 cut(s)	35, 137, 253, 404, 410, 421, 491, 545, 630
Hpy8I	GTNNAC	2 cut(s)	19, 556
HpyAV	CCTTC	2 cut(s)	370, 632
HpyCH4V	TGCA	3 cut(s)	281, 395, 599
HpyF10VI	GCNNNNNNNGC	3 cut(s)	37, 77, 196
HpyF3I	CTNAG	2 cut(s)	106, 317
Hsp92II	CATG	1 cut(s)	562
HspAI	GCGC	1 cut(s)	322
Kpn2I	TCCGGA	1 cut(s)	420
Ksp22I	TGATCA	2 cut(s)	133, 157
Kzo9I	GATC	4 cut(s)	126, 133, 157, 406
LguI	GCTCTTC	1 cut(s)	87
LpnPI	CCDG	9 cut(s)	78, 109, 162, 189, 216, 249, 266, 434, 507
Lsp1109I	GCAGC	1 cut(s)	565
LweI	GCATC	3 cut(s)	153, 224, 331
MaeI	CTAG	3 cut(s)	102, 345, 630
MalI	GATC	4 cut(s)	128, 135, 159, 408
MboI	GATC	4 cut(s)	126, 133, 157, 406
MboII	GAAGA	4 cut(s)	74, 192, 436, 530
MhlI	GDGCHC	2 cut(s)	82, 498
MlsI	TGGCCA	1 cut(s)	563
MluCI	AATT	2 cut(s)	26, 416
MluNI	TGGCCA	1 cut(s)	563
MlyI	GAGTC	1 cut(s)	426
MmeI	TCCRAC	2 cut(s)	364, 442
MnlI	CCTC	6 cut(s)	21, 103, 234, 312, 470, 552
Mox20I	TGGCCA	1 cut(s)	563
MroI	TCCGGA	1 cut(s)	420
MscI	TGGCCA	1 cut(s)	563
MseI	TTAA	2 cut(s)	186, 308
MslI	CAYNNNNRTG	2 cut(s)	141, 333
Msp20I	TGGCCA	1 cut(s)	563
MspA1I	CMGCKG	1 cut(s)	578
MspI	CCGG	2 cut(s)	149, 421
MspR9I	CCNGG	2 cut(s)	149, 204
MvaI	CCWGG	1 cut(s)	204
MwoI	GCNNNNNNNGC	3 cut(s)	37, 77, 196
NciI	CCSGG	1 cut(s)	149
NdeII	GATC	4 cut(s)	126, 133, 157, 406
NheI	GCTAGC	1 cut(s)	101
NlaIII	CATG	1 cut(s)	562
PaeR7I	CTCGAG	1 cut(s)	12
PciSI	GCTCTTC	1 cut(s)	87
PfeI	GAWTC	2 cut(s)	44, 400
PkrI	GCNGC	1 cut(s)	580
PleI	GAGTC	1 cut(s)	426
PpsI	GAGTC	1 cut(s)	426
Psp124BI	GAGCTC	1 cut(s)	498
Psp6I	CCWGG	1 cut(s)	202
PspGI	CCWGG	1 cut(s)	202
PspXI	VCTCGAGB	1 cut(s)	12
PstNI	CAGNNNCTG	2 cut(s)	98, 218
RsaI	GTAC	2 cut(s)	97, 351
RsaNI	GTAC	2 cut(s)	96, 350
RseI	CAYNNNNRTG	2 cut(s)	141, 333
SacI	GAGCTC	1 cut(s)	498
SapI	GCTCTTC	1 cut(s)	87
SaqAI	TTAA	2 cut(s)	186, 308
SatI	GCNGC	1 cut(s)	579
Sau3AI	GATC	4 cut(s)	126, 133, 157, 406
SchI	GAGTC	1 cut(s)	426
ScrFI	CCNGG	2 cut(s)	149, 204
SduI	GDGCHC	2 cut(s)	82, 498
SfaNI	GCATC	3 cut(s)	153, 224, 331
Sfr274I	CTCGAG	1 cut(s)	12
SlaI	CTCGAG	1 cut(s)	12
SmiMI	CAYNNNNRTG	2 cut(s)	141, 333
SmlI	CTYRAG	2 cut(s)	12, 491
SmoI	CTYRAG	2 cut(s)	12, 491
Sse9I	AATT	2 cut(s)	26, 416
SsiI	CCGC	1 cut(s)	576
SspMI	CTAG	3 cut(s)	102, 345, 630
SstI	GAGCTC	1 cut(s)	498
StyD4I	CCNGG	2 cut(s)	147, 202
TaqI	TCGA	1 cut(s)	13
TasI	AATT	2 cut(s)	26, 416
TfiI	GAWTC	2 cut(s)	44, 400
Tru1I	TTAA	2 cut(s)	186, 308
Tru9I	TTAA	2 cut(s)	186, 308
TseI	GCWGC	1 cut(s)	578
TspDTI	ATGAA	1 cut(s)	74
XapI	RAATTY	1 cut(s)	416
XbaI	TCTAGA	1 cut(s)	629
XhoI	CTCGAG	1 cut(s)	12
XspI	CTAG	3 cut(s)	102, 345, 630

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.