Rorug06G0163300

UBX domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0004919
Physical Location & Seq
Forward (+)
23257215 .. 23258465
1251 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0163300.1

Sequence Viewer

Length: 1251 bp
ATGCTAGTCATAAATGGGTATCCAGGAACTAGACTTCCTGATTGGACTCTTCCGAATCTAACTGCAGTTTATTTGAAGGAATGTAGAAATTGTCAGAATCTTCCAGCTCTTGGGAATCTCCTGATGCTTAAAACTCTTTCTTTGCAAGGAATAGATAGTCTGAAACACGTTGGTGCAGATTTCTATGGTGATGGTACCACCATACCATTCTTGTCACTTGAAGAGTTATCGCTCTGTGATTTATCCAACTTGGAAGAATGGTCGAGTGCAAATAACATGACTTCATTCCCGAGATTGAGGAAGTTAACCGTTAACAGATGTCCCAAGTTAGCACATATACCATTATCTGAATCTCTTCAACATTTGGAGTTGCGGGGTTGTAAACTACGTTTGATGTCCATGGCAAATTTAAGTTTACTTTCTGTGCTCGTCTTAGAAAATATTCCAGACCTATCCTCTCTCCCACAAGGACTTATTGCATCAGCTCATCTGTCTTGTCTGAAGATTTTGTCATGCCCCAAGCTTCGTTCACTGCCTTTGGAGATGGGAAATTGCCTTACTAGTCTGAAATCATTGACCATTGGTTGGTGTCAAGATCTTTCGTCTCTGCCTGAGAGTTTGCAAAACCTCAAAGCCCTGGAATCACTGGAGATTAGTGACTGTCACTACATAATCTCCATGCCCGATGGTGCTATTGGAGGTTTGAGTTCCCTTCGAACTTTGTCCATTGAGAACTGCACTAGTCTGACTTCCTTGTCTTCGAGTTTGGAACATTTGACATTCCTTGAACACTTGACCATTATGTATTGTCCAAGTCTTGATTCTTTTCCAGAGGGTGTGCAACACCTCTCTGCCCTTCGAAGTTTGACTATCCTGAGCTGTCCTTGGTTTGACTCTCTGCCAAATGGCTTACAAAATGTCAGGACACTGCACTGTTTGGAAATTAGTAGCTGCACAAATCTAAGAGCTTTGCCAGAATGGTTTGAGAATCTTGACTCTCTTAGATCCTTGACCATATCTGCTTGTCCTAATTTAGAAGAATTGCCGGCAGGTCTAAAGCATCTCACTAAACTCCAGTACCTCTCTATCCAAGAATGTCCTGAGCTTGAGCAAAGATGCAGACAAGGAAGTGGAGAGGATTGGTTCAAAATAGCTCATGTTCCACATAAATACATTGGTTCTCCTCAGGTCAGTCAATCCAGCGAAGCAAGCACCTCAGGCGGATCGTCTTCTCAAACATCTGCTCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PUB UBA

Protein Analysis

416

Amino Acids

45.7

Weight (kDa)

5.65

Isoelectric Point (pI)

61.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_R13L1-DRL21 PF25019 2 - 50 1.3e-10 R13L1/DRL21 LRRs
LRR_14 PF23598 169 - 292 1.2e-09 Leucine-rich repeat region
LRR_13 PF23286 186 - 372 2.1e-07 Disease resistance protein RPS4B-like, leucine-rich repeats
LRR_14 PF23598 237 - 365 1e-12 Leucine-rich repeat region
LRR_R13L1-DRL21 PF25019 304 - 366 5.6e-07 R13L1/DRL21 LRRs
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 754
Acc36I ACCTGC 1 cut(s) 1040
Acc65I GGTACC 1 cut(s) 194
AccB1I GGYRCC 1 cut(s) 194
AccB7I CCANNNNNTGG 2 cut(s) 110, 585
AciI CCGC 2 cut(s) 373, 1221
AclWI GGATC 2 cut(s) 999, 1231
AcsI RAATTY 1 cut(s) 406
AcuI CTGAAG 1 cut(s) 521
AfaI GTAC 2 cut(s) 196, 1079
AfiI CCNNNNNNNGG 2 cut(s) 110, 585
AflIII ACRYGT 1 cut(s) 166
AgsI TTSAA 5 cut(s) 76, 221, 359, 788, 1147
AhlI ACTAGT 2 cut(s) 560, 740
AjnI CCWGG 2 cut(s) 22, 636
AjuI GAANNNNNNNTTGG 2 cut(s) 805, 837
AleI CACNNNNGTG 1 cut(s) 171
AloI GAACNNNNNNTCC 2 cut(s) 19, 51
AluBI AGCT 8 cut(s) 107, 485, 523, 879, 951, 968, 1105, 1154
AluI AGCT 8 cut(s) 107, 485, 523, 879, 951, 968, 1105, 1154
Alw21I GWGCWC 1 cut(s) 429
Alw26I GTCTC 1 cut(s) 609
AlwI GGATC 2 cut(s) 999, 1231
Ama87I CYCGRG 1 cut(s) 289
ApeKI GCWGC 1 cut(s) 951
ApoI RAATTY 1 cut(s) 406
Asp700I GAANNNNTTC 2 cut(s) 354, 441
Asp718I GGTACC 1 cut(s) 194
AsuHPI GGTGA 1 cut(s) 200
AsuII TTCGAA 2 cut(s) 715, 859
AvaI CYCGRG 1 cut(s) 289
AxyI CCTNAGG 2 cut(s) 1185, 1216
BaeI ACNNNNGTAYC 2 cut(s) 1061, 1094
BanI GGYRCC 1 cut(s) 194
BbsI GAAGAC 2 cut(s) 750, 1221
Bbv12I GWGCWC 1 cut(s) 429
BbvI GCAGC 1 cut(s) 938
BccI CCATC 3 cut(s) 185, 538, 680
BciT130I CCWGG 2 cut(s) 24, 638
BciVI GTATCC 1 cut(s) 30
BcoDI GTCTC 1 cut(s) 609
BcuI ACTAGT 2 cut(s) 560, 740
BfaI CTAG 4 cut(s) 5, 30, 561, 741
BfmI CTRYAG 1 cut(s) 63
BfuAI ACCTGC 1 cut(s) 1040
BfuI GTATCC 1 cut(s) 30
BglII AGATCT 1 cut(s) 595
BisI GCNGC 1 cut(s) 952
BlsI GCNGC 1 cut(s) 953
Bme1390I CCNGG 2 cut(s) 24, 638
BmeT110I CYCGRG 1 cut(s) 289
BmiI GGNNCC 1 cut(s) 196
BmrFI CCNGG 2 cut(s) 24, 638
BmsI GCATC 4 cut(s) 114, 488, 1069, 1106
BpiI GAAGAC 2 cut(s) 750, 1221
BpmI CTGGAG 2 cut(s) 668, 1058
Bpu10I CCTNAGC 2 cut(s) 875, 1101
Bpu14I TTCGAA 2 cut(s) 715, 859
BpuEI CTTGAG 1 cut(s) 1127
BsaJI CCNNGG 3 cut(s) 399, 636, 884
BsaXI ACNNNNNCTCC 2 cut(s) 659, 689
Bsc4I CCNNNNNNNGG 2 cut(s) 110, 585
Bse118I RCCGGY 1 cut(s) 1045
Bse1I ACTGG 2 cut(s) 651, 1075
Bse21I CCTNAGG 2 cut(s) 1185, 1216
BseBI CCWGG 2 cut(s) 24, 638
BseDI CCNNGG 3 cut(s) 399, 636, 884
BseLI CCNNNNNNNGG 2 cut(s) 110, 585
BseMII CTCAG 5 cut(s) 603, 866, 1092, 1199, 1230
BseNI ACTGG 2 cut(s) 651, 1075
BseRI GAGGAG 1 cut(s) 1173
BseXI GCAGC 1 cut(s) 938
BsgI GTGCAG 4 cut(s) 195, 721, 914, 937
BshNI GGYRCC 1 cut(s) 194
BsiHKAI GWGCWC 1 cut(s) 429
BsiHKCI CYCGRG 1 cut(s) 289
BsiSI CCGG 1 cut(s) 1046
BslFI GGGAC 1 cut(s) 306
BslI CCNNNNNNNGG 2 cut(s) 110, 585
BsmAI GTCTC 1 cut(s) 609
BsmBI CGTCTC 1 cut(s) 609
BsmFI GGGAC 1 cut(s) 306
BsoBI CYCGRG 1 cut(s) 289
Bsp119I TTCGAA 2 cut(s) 715, 859
Bsp1286I GDGCHC 1 cut(s) 429
Bsp143I GATC 3 cut(s) 595, 1004, 1223
Bsp19I CCATGG 1 cut(s) 399
BspACI CCGC 2 cut(s) 373, 1221
BspCNI CTCAG 5 cut(s) 604, 867, 1093, 1198, 1229
BspLI GGNNCC 1 cut(s) 196
BspMAI CTGCAG 1 cut(s) 67
BspMI ACCTGC 1 cut(s) 1040
BspPI GGATC 2 cut(s) 999, 1231
BspT104I TTCGAA 2 cut(s) 715, 859
BspT107I GGYRCC 1 cut(s) 194
BsrFI RCCGGY 1 cut(s) 1045
BsrI ACTGG 2 cut(s) 651, 1075
BssAI RCCGGY 1 cut(s) 1045
BssECI CCNNGG 3 cut(s) 399, 636, 884
BssMI GATC 3 cut(s) 595, 1004, 1223
BssT1I CCWWGG 2 cut(s) 399, 884
Bst2UI CCWGG 2 cut(s) 24, 638
Bst4CI ACNGT 3 cut(s) 310, 662, 935
Bst6I CTCTTC 3 cut(s) 54, 216, 360
BstBI TTCGAA 2 cut(s) 715, 859
BstC8I GCNNGC 2 cut(s) 1047, 1210
BstDEI CTNAG 9 cut(s) 433, 612, 875, 962, 1001, 1101, 1185, 1216, 1245
BstDSI CCRYGG 1 cut(s) 399
BstKTI GATC 3 cut(s) 598, 1007, 1226
BstMAI GTCTC 1 cut(s) 609
BstMBI GATC 3 cut(s) 595, 1004, 1223
BstMWI GCNNNNNNNGC 2 cut(s) 1209, 1218
BstNI CCWGG 2 cut(s) 24, 638
BstSCI CCNGG 2 cut(s) 22, 636
BstSFI CTRYAG 1 cut(s) 63
BstV1I GCAGC 1 cut(s) 938
BstV2I GAAGAC 2 cut(s) 750, 1221
BstX2I RGATCY 2 cut(s) 595, 1004
BstYI RGATCY 2 cut(s) 595, 1004
Bsu36I CCTNAGG 2 cut(s) 1185, 1216
BsuI GTATCC 1 cut(s) 30
BtgI CCRYGG 1 cut(s) 399
BtsI GCAGTG 2 cut(s) 530, 926
BtsIMutI CAGTG 4 cut(s) 530, 644, 926, 931
BveI ACCTGC 1 cut(s) 1040
Cac8I GCNNGC 2 cut(s) 1047, 1210
Cfr10I RCCGGY 1 cut(s) 1045
Csp6I GTAC 2 cut(s) 195, 1078
CviAII CATG 5 cut(s) 277, 400, 513, 679, 1157
CviQI GTAC 2 cut(s) 195, 1078
DdeI CTNAG 9 cut(s) 433, 612, 875, 962, 1001, 1101, 1185, 1216, 1245
DpnI GATC 3 cut(s) 597, 1006, 1225
DpnII GATC 3 cut(s) 595, 1004, 1223
DrdI GACNNNNNNGTC 1 cut(s) 754
DseDI GACNNNNNNGTC 1 cut(s) 754
Eam1104I CTCTTC 3 cut(s) 54, 216, 360
EarI CTCTTC 3 cut(s) 54, 216, 360
EciI GGCGGA 1 cut(s) 1236
Eco130I CCWWGG 2 cut(s) 399, 884
Eco57I CTGAAG 1 cut(s) 521
Eco81I CCTNAGG 2 cut(s) 1185, 1216
Eco88I CYCGRG 1 cut(s) 289
EcoRII CCWGG 2 cut(s) 22, 636
EcoT14I CCWWGG 2 cut(s) 399, 884
ErhI CCWWGG 2 cut(s) 399, 884
Esp3I CGTCTC 1 cut(s) 609
FaeI CATG 5 cut(s) 280, 403, 516, 682, 1160
FaqI GGGAC 1 cut(s) 306
FatI CATG 5 cut(s) 276, 399, 512, 678, 1156
FauI CCCGC 1 cut(s) 366
Fnu4HI GCNGC 1 cut(s) 952
Fsp4HI GCNGC 1 cut(s) 952
FspBI CTAG 4 cut(s) 5, 30, 561, 741
GluI GCNGC 1 cut(s) 952
GsuI CTGGAG 2 cut(s) 668, 1058
HapII CCGG 1 cut(s) 1046
Hin1II CATG 5 cut(s) 280, 403, 516, 682, 1160
HincII GTYRAC 2 cut(s) 306, 313
HindII GTYRAC 2 cut(s) 306, 313
HindIII AAGCTT 1 cut(s) 521
HpaI GTTAAC 2 cut(s) 306, 313
HpaII CCGG 1 cut(s) 1046
HphI GGTGA 1 cut(s) 200
Hpy166II GTNNAC 5 cut(s) 306, 313, 383, 416, 530
Hpy188I TCNGA 7 cut(s) 54, 96, 162, 349, 501, 567, 747
Hpy8I GTNNAC 5 cut(s) 306, 313, 383, 416, 530
HpyAV CCTTC 3 cut(s) 70, 722, 866
HpyCH4III ACNGT 3 cut(s) 310, 662, 935
HpyCH4IV ACGT 2 cut(s) 168, 388
HpyF10VI GCNNNNNNNGC 2 cut(s) 1209, 1218
HpyF3I CTNAG 9 cut(s) 433, 612, 875, 962, 1001, 1101, 1185, 1216, 1245
HpySE526I ACGT 2 cut(s) 168, 388
Hsp92II CATG 5 cut(s) 280, 403, 516, 682, 1160
KpnI GGTACC 1 cut(s) 198
KroI GCCGGC 1 cut(s) 1045
KroNI GCCGGC 1 cut(s) 1047
KspAI GTTAAC 2 cut(s) 306, 313
Kzo9I GATC 3 cut(s) 595, 1004, 1223
Lsp1109I GCAGC 1 cut(s) 938
LweI GCATC 4 cut(s) 114, 488, 1069, 1106
MaeI CTAG 4 cut(s) 5, 30, 561, 741
MaeII ACGT 2 cut(s) 168, 388
MaeIII GTNAC 3 cut(s) 213, 656, 662
MalI GATC 3 cut(s) 597, 1006, 1225
MboI GATC 3 cut(s) 595, 1004, 1223
MboII GAAGA 9 cut(s) 41, 92, 233, 266, 347, 514, 750, 1049, 1221
MflI RGATCY 2 cut(s) 595, 1004
MhlI GDGCHC 1 cut(s) 429
MluCI AATT 6 cut(s) 88, 406, 550, 942, 1030, 1040
MlyI GAGTC 3 cut(s) 40, 887, 989
MmeI TCCRAC 1 cut(s) 270
MroNI GCCGGC 1 cut(s) 1045
MroXI GAANNNNTTC 2 cut(s) 354, 441
MseI TTAA 4 cut(s) 129, 305, 312, 410
MslI CAYNNNNRTG 1 cut(s) 171
MspI CCGG 1 cut(s) 1046
MspR9I CCNGG 2 cut(s) 24, 638
MvaI CCWGG 2 cut(s) 24, 638
MwoI GCNNNNNNNGC 2 cut(s) 1209, 1218
NaeI GCCGGC 1 cut(s) 1047
NcoI CCATGG 1 cut(s) 399
NdeII GATC 3 cut(s) 595, 1004, 1223
NgoMIV GCCGGC 1 cut(s) 1045
NlaIII CATG 5 cut(s) 280, 403, 516, 682, 1160
NlaIV GGNNCC 1 cut(s) 196
NmuCI GTSAC 3 cut(s) 213, 656, 662
NspV TTCGAA 2 cut(s) 715, 859
OliI CACNNNNGTG 1 cut(s) 171
PdiI GCCGGC 1 cut(s) 1047
PdmI GAANNNNTTC 2 cut(s) 354, 441
PfeI GAWTC 7 cut(s) 55, 97, 115, 350, 641, 821, 988
PflMI CCANNNNNTGG 2 cut(s) 110, 585
PfoI TCCNGGA 1 cut(s) 22
PkrI GCNGC 1 cut(s) 953
PleI GAGTC 3 cut(s) 40, 887, 989
PpsI GAGTC 3 cut(s) 40, 887, 989
Psp6I CCWGG 2 cut(s) 22, 636
PspGI CCWGG 2 cut(s) 22, 636
PspN4I GGNNCC 1 cut(s) 196
PstI CTGCAG 1 cut(s) 67
PsuI RGATCY 2 cut(s) 595, 1004
RsaI GTAC 2 cut(s) 196, 1079
RsaNI GTAC 2 cut(s) 195, 1078
RseI CAYNNNNRTG 1 cut(s) 171
SaqAI TTAA 4 cut(s) 129, 305, 312, 410
SatI GCNGC 1 cut(s) 952
Sau3AI GATC 3 cut(s) 595, 1004, 1223
SchI GAGTC 3 cut(s) 40, 887, 989
ScrFI CCNGG 2 cut(s) 24, 638
SduI GDGCHC 1 cut(s) 429
SfaNI GCATC 4 cut(s) 114, 488, 1069, 1106
SfcI CTRYAG 1 cut(s) 63
SfuI TTCGAA 2 cut(s) 715, 859
SmiMI CAYNNNNRTG 1 cut(s) 171
SmlI CTYRAG 1 cut(s) 1106
SmoI CTYRAG 1 cut(s) 1106
SpeI ACTAGT 2 cut(s) 560, 740
Sse9I AATT 6 cut(s) 88, 406, 550, 942, 1030, 1040
SsiI CCGC 2 cut(s) 373, 1221
SspI AATATT 1 cut(s) 442
SspMI CTAG 4 cut(s) 5, 30, 561, 741
StyD4I CCNGG 2 cut(s) 22, 636
StyI CCWWGG 2 cut(s) 399, 884
TaaI ACNGT 3 cut(s) 310, 662, 935
TaiI ACGT 2 cut(s) 171, 391
TaqI TCGA 4 cut(s) 263, 715, 761, 859
TasI AATT 6 cut(s) 88, 406, 550, 942, 1030, 1040
TfiI GAWTC 7 cut(s) 55, 97, 115, 350, 641, 821, 988
Tru1I TTAA 4 cut(s) 129, 305, 312, 410
Tru9I TTAA 4 cut(s) 129, 305, 312, 410
TscAI CASTG 4 cut(s) 537, 651, 933, 938
TseFI GTSAC 3 cut(s) 213, 656, 662
TseI GCWGC 1 cut(s) 951
Tsp45I GTSAC 3 cut(s) 213, 656, 662
TspDTI ATGAA 1 cut(s) 273
TspRI CASTG 4 cut(s) 537, 651, 933, 938
Van91I CCANNNNNTGG 2 cut(s) 110, 585
XapI RAATTY 1 cut(s) 406
XmnI GAANNNNTTC 2 cut(s) 354, 441
XspI CTAG 4 cut(s) 5, 30, 561, 741
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.