Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0004919

Physical Location & Seq

Genomic Coordinates Reverse (-)

21944290 .. 21947452

Gene Structure 3163 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012745

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGCAAACCTTGCTGACGACCCAAATACAGACAGGGATGGCTGTTCCTCGAGTAAACAAGAAATTGCTTCAAGAGCTTGAATCAATGGGATTTCCCACAGCTCGGGCAACACGGGCTCTTCATTATTCAGGTACTGCTAGCTTAGATTCTTGTATAGACTGGATCGTTGATCACGAGAATGACCCGGACATTGATCAGATGCCCTTGGTAACAGTAGACATTGATATTGAATCTCCAGAGCCATTCCATATCACCGAGGCAATGAAAATAAAAGCACAAGAGTTAAGGGATCAAACATGCAAGAAGAGGAAAGAAGAAGAAAAGAAACTGGAATTACAAATGGAACGAGAAAGGGAGAAGGAGAGGATTCGATCTGGTAAGGAACTCATGGAAGCAAAGCAAATCTTAGAAGACAATGAAAGAAAACGTAATGTAGCGCTTCGGAATTCTGAGAAAGAGGAAGAGAAACGAGCAAAAGAGAGAATTCGCTGGAAACTAGAACAAGATAAGTTAGAAAGAAGAGTTAAGCTTGGATTGCCACCAGGACACACTGCATCTGCAAATCTTTCTATACCTGTGAGGGGGGAAATCCAGAAATCATTGCCCGTTCGATCTGTTGCAAGGTCAGAACATATGAGAGAGTGTTTAAGGTCTCTGAGGCGTAACCACAAGGATGATGATGCTAGAGTACGACGAGCCTTCCAAACTCTGCTGATTTATGTTGGAAATGTTGCAAAGAATCCCAATCAAGAAAAATTCCGGAAGATTAGACTCAGTAATCCGGCATTCTTGGATAGAGTTGGAAGTTTGACTGGAGGAATAGAGTTTCTTGAGCTCTCTGGGTTTGAGAGAACTGAAGCAGGAGAGTTCTTGTATCTTCCTCGTGATAAGGTTGACATGGCAATATTATACTCCGCTGCTTCTGAACTGAAGTCTGCATTGACAAACCCTTTCTTTGGCCTTCTGTCAAAAGATGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PUB UBA

Protein Analysis

327

Amino Acids

37.6

Weight (kDa)

8.96

Isoelectric Point (pI)

55.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UBA_7	PF22562	19 - 66	1.9e-15	UBA-like domain
PUB	PF09409	229 - 299	6e-21	PUB domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004919)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48690 AT5G48690 AT5G48690
fragaria_vesca	FvH4_2g18750 FvH4_2g18750
malus_domestica	MD05G1173000.v1.1
prunus_persica	Prupe.8G200600_v2.0.a1 Prupe.8G200600_v2.0.a1 Prupe.8G200600_v2.0.a1 Prupe.8G200600_v2.0.a1 Prupe.8G200600_v2.0.a1
pyrus_communis	pycom05g15970
rosa_chinensis	RchiOBHm_Chr6g0284421 RchiOBHm_Chr6g0284441
rosa_laevigata	RLG00000012745
rosa_multiflora	Rmu_sc0005959.1_g000001 Rmu_sc0032923.1_g000001
rosa_roxburghii	Rroxscaffold_7G00184710
rosa_rugosa	Rorug06G0163100 Rorug06G0163200 Rorug06G0163300 Rorug06G0163400 Rorug06G0163500 Rorug06G0163600 Rorug06G0163700
rosa_samantha	Rh6AG275900 Rh6BG276300 Rh6CG278300 Rh6CG278400
rosa_wichuraiana	Rw6G023740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	216
AccIII	TCCGGA	1 cut(s)	759
AciI	CCGC	1 cut(s)	915
AclWI	GGATC	2 cut(s)	170, 297
AcsI	RAATTY	3 cut(s)	445, 483, 755
AcuI	CTGAAG	2 cut(s)	876, 950
AfaI	GTAC	2 cut(s)	133, 690
AfeI	AGCGCT	1 cut(s)	438
AfiI	CCNNNNNNNGG	3 cut(s)	102, 581, 956
AgsI	TTSAA	3 cut(s)	71, 80, 230
AjnI	CCWGG	1 cut(s)	541
AluBI	AGCT	5 cut(s)	76, 101, 141, 529, 835
AluI	AGCT	5 cut(s)	76, 101, 141, 529, 835
Alw21I	GWGCWC	1 cut(s)	837
Alw26I	GTCTC	1 cut(s)	657
AlwI	GGATC	2 cut(s)	170, 297
AlwNI	CAGNNNCTG	1 cut(s)	134
Ama87I	CYCGRG	2 cut(s)	48, 102
Aor13HI	TCCGGA	1 cut(s)	759
Aor51HI	AGCGCT	1 cut(s)	438
AoxI	GGCC	1 cut(s)	958
ApeKI	GCWGC	1 cut(s)	917
ApoI	RAATTY	3 cut(s)	445, 483, 755
AspLEI	GCGC	1 cut(s)	439
AsuC2I	CCSGG	1 cut(s)	185
AsuHPI	GGTGA	1 cut(s)	244
AsuNHI	GCTAGC	1 cut(s)	137
AvaI	CYCGRG	2 cut(s)	48, 102
BanII	GRGCYC	2 cut(s)	118, 837
BauI	CACGAG	2 cut(s)	173, 882
BbsI	GAAGAC	1 cut(s)	417
Bbv12I	GWGCWC	1 cut(s)	837
BbvI	GCAGC	1 cut(s)	904
BccI	CCATC	1 cut(s)	31
BciT130I	CCWGG	1 cut(s)	543
BclI	TGATCA	2 cut(s)	169, 193
BcnI	CCSGG	1 cut(s)	185
BcoDI	GTCTC	1 cut(s)	657
BfaI	CTAG	3 cut(s)	138, 497, 684
BfoI	RGCGCY	1 cut(s)	440
BisI	GCNGC	1 cut(s)	918
BlsI	GCNGC	1 cut(s)	919
Bme1390I	CCNGG	2 cut(s)	185, 543
BmeT110I	CYCGRG	2 cut(s)	48, 102
BmrFI	CCNGG	2 cut(s)	185, 543
BmsI	GCATC	3 cut(s)	189, 563, 670
BmtI	GCTAGC	1 cut(s)	141
BpiI	GAAGAC	1 cut(s)	417
BpmI	CTGGAG	2 cut(s)	219, 834
BpuEI	CTTGAG	1 cut(s)	851
BpuMI	CCSGG	1 cut(s)	185
BsaI	GGTCTC	1 cut(s)	657
BsaJI	CCNNGG	2 cut(s)	204, 255
BsaWI	WCCGGW	1 cut(s)	759
Bsc4I	CCNNNNNNNGG	3 cut(s)	102, 581, 956
Bse1I	ACTGG	3 cut(s)	164, 333, 817
Bse3DI	GCAATG	2 cut(s)	267, 599
BseAI	TCCGGA	1 cut(s)	759
BseBI	CCWGG	1 cut(s)	543
BseDI	CCNNGG	2 cut(s)	204, 255
BseGI	GGATG	2 cut(s)	42, 679
BseLI	CCNNNNNNNGG	3 cut(s)	102, 581, 956
BseMI	GCAATG	2 cut(s)	267, 599
BseMII	CTCAG	3 cut(s)	441, 647, 787
BseNI	ACTGG	3 cut(s)	164, 333, 817
BseXI	GCAGC	1 cut(s)	904
BshFI	GGCC	1 cut(s)	960
BsiHKAI	GWGCWC	1 cut(s)	837
BsiHKCI	CYCGRG	2 cut(s)	48, 102
BsiSI	CCGG	3 cut(s)	185, 760, 782
BslI	CCNNNNNNNGG	3 cut(s)	102, 581, 956
BsmAI	GTCTC	1 cut(s)	657
BsmI	GAATGC	1 cut(s)	785
BsnI	GGCC	1 cut(s)	960
Bso31I	GGTCTC	1 cut(s)	657
BsoBI	CYCGRG	2 cut(s)	48, 102
Bsp1286I	GDGCHC	2 cut(s)	118, 837
Bsp13I	TCCGGA	1 cut(s)	759
Bsp143I	GATC	6 cut(s)	162, 169, 193, 289, 371, 611
BspACI	CCGC	1 cut(s)	915
BspANI	GGCC	1 cut(s)	960
BspCNI	CTCAG	3 cut(s)	442, 648, 786
BspEI	TCCGGA	1 cut(s)	759
BspOI	GCTAGC	1 cut(s)	141
BspPI	GGATC	2 cut(s)	170, 297
BspQI	GCTCTTC	1 cut(s)	123
BspTNI	GGTCTC	1 cut(s)	657
BsrDI	GCAATG	2 cut(s)	267, 599
BsrI	ACTGG	3 cut(s)	164, 333, 817
BssECI	CCNNGG	2 cut(s)	204, 255
BssMI	GATC	6 cut(s)	162, 169, 193, 289, 371, 611
BssSI	CACGAG	2 cut(s)	173, 882
BssT1I	CCWWGG	1 cut(s)	204
Bst2BI	CACGAG	2 cut(s)	173, 882
Bst2UI	CCWGG	1 cut(s)	543
Bst4CI	ACNGT	1 cut(s)	214
Bst6I	CTCTTC	4 cut(s)	123, 299, 456, 514
BstAPI	GCANNNNNTGC	1 cut(s)	10
BstC8I	GCNNGC	1 cut(s)	139
BstDEI	CTNAG	5 cut(s)	142, 406, 450, 656, 773
BstF5I	GGATG	2 cut(s)	42, 679
BstH2I	RGCGCY	1 cut(s)	440
BstHHI	GCGC	1 cut(s)	439
BstKTI	GATC	6 cut(s)	165, 172, 196, 292, 374, 614
BstMAI	GTCTC	1 cut(s)	657
BstMBI	GATC	6 cut(s)	162, 169, 193, 289, 371, 611
BstMWI	GCNNNNNNNGC	4 cut(s)	10, 73, 113, 535
BstNI	CCWGG	1 cut(s)	543
BstNSI	RCATGY	1 cut(s)	300
BstSCI	CCNGG	2 cut(s)	183, 541
BstV1I	GCAGC	1 cut(s)	904
BstV2I	GAAGAC	1 cut(s)	417
BsuRI	GGCC	1 cut(s)	960
BtsCI	GGATG	2 cut(s)	42, 679
BtsI	GCAGTG	1 cut(s)	549
BtsIMutI	CAGTG	1 cut(s)	549
Cac8I	GCNNGC	1 cut(s)	139
CaiI	CAGNNNCTG	1 cut(s)	134
CfoI	GCGC	1 cut(s)	439
Csp6I	GTAC	2 cut(s)	132, 689
CviAII	CATG	3 cut(s)	297, 388, 898
CviQI	GTAC	2 cut(s)	132, 689
DdeI	CTNAG	5 cut(s)	142, 406, 450, 656, 773
DpnI	GATC	6 cut(s)	164, 171, 195, 291, 373, 613
DpnII	GATC	6 cut(s)	162, 169, 193, 289, 371, 611
Eam1104I	CTCTTC	4 cut(s)	123, 299, 456, 514
EarI	CTCTTC	4 cut(s)	123, 299, 456, 514
Ecl136II	GAGCTC	1 cut(s)	835
Eco130I	CCWWGG	1 cut(s)	204
Eco24I	GRGCYC	2 cut(s)	118, 837
Eco31I	GGTCTC	1 cut(s)	657
Eco47III	AGCGCT	1 cut(s)	438
Eco53kI	GAGCTC	1 cut(s)	835
Eco57I	CTGAAG	2 cut(s)	876, 950
Eco88I	CYCGRG	2 cut(s)	48, 102
EcoICRI	GAGCTC	1 cut(s)	835
EcoRI	GAATTC	2 cut(s)	445, 483
EcoRII	CCWGG	1 cut(s)	541
EcoT14I	CCWWGG	1 cut(s)	204
EcoT38I	GRGCYC	2 cut(s)	118, 837
ErhI	CCWWGG	1 cut(s)	204
FaeI	CATG	3 cut(s)	300, 391, 901
FalI	AAGNNNNNCTT	2 cut(s)	389, 421
FatI	CATG	3 cut(s)	296, 387, 897
FauNDI	CATATG	1 cut(s)	633
FbaI	TGATCA	2 cut(s)	169, 193
FblI	GTMKAC	1 cut(s)	216
Fnu4HI	GCNGC	1 cut(s)	918
FokI	GGATG	2 cut(s)	49, 686
FriOI	GRGCYC	2 cut(s)	118, 837
Fsp4HI	GCNGC	1 cut(s)	918
FspBI	CTAG	3 cut(s)	138, 497, 684
GlaI	GCGC	1 cut(s)	438
GluI	GCNGC	1 cut(s)	918
GsuI	CTGGAG	2 cut(s)	219, 834
HaeII	RGCGCY	1 cut(s)	440
HaeIII	GGCC	1 cut(s)	960
HapII	CCGG	3 cut(s)	185, 760, 782
HhaI	GCGC	1 cut(s)	439
Hin1II	CATG	3 cut(s)	300, 391, 901
Hin6I	GCGC	1 cut(s)	437
HinP1I	GCGC	1 cut(s)	437
HincII	GTYRAC	1 cut(s)	895
HindII	GTYRAC	1 cut(s)	895
HindIII	AAGCTT	1 cut(s)	527
HinfI	GANTC	6 cut(s)	80, 146, 230, 367, 739, 771
HpaII	CCGG	3 cut(s)	185, 760, 782
HphI	GGTGA	1 cut(s)	244
Hpy166II	GTNNAC	3 cut(s)	55, 217, 895
Hpy188I	TCNGA	6 cut(s)	198, 444, 451, 628, 657, 925
Hpy188III	TCNNGA	8 cut(s)	71, 173, 236, 592, 749, 760, 830, 884
Hpy8I	GTNNAC	3 cut(s)	55, 217, 895
Hpy99I	CGWCG	1 cut(s)	696
HpyAV	CCTTC	3 cut(s)	352, 709, 971
HpyCH4III	ACNGT	1 cut(s)	214
HpyCH4IV	ACGT	1 cut(s)	427
HpyCH4V	TGCA	7 cut(s)	4, 300, 554, 560, 620, 734, 938
HpyF10VI	GCNNNNNNNGC	4 cut(s)	10, 73, 113, 535
HpyF3I	CTNAG	5 cut(s)	142, 406, 450, 656, 773
HpySE526I	ACGT	1 cut(s)	427
Hsp92II	CATG	3 cut(s)	300, 391, 901
HspAI	GCGC	1 cut(s)	437
Kpn2I	TCCGGA	1 cut(s)	759
Ksp22I	TGATCA	2 cut(s)	169, 193
Kzo9I	GATC	6 cut(s)	162, 169, 193, 289, 371, 611
LguI	GCTCTTC	1 cut(s)	123
Lsp1109I	GCAGC	1 cut(s)	904
LweI	GCATC	3 cut(s)	189, 563, 670
MaeI	CTAG	3 cut(s)	138, 497, 684
MaeII	ACGT	1 cut(s)	427
MaeIII	GTNAC	2 cut(s)	208, 662
MalI	GATC	6 cut(s)	164, 171, 195, 291, 373, 613
MboI	GATC	6 cut(s)	162, 169, 193, 289, 371, 611
MboII	GAAGA	9 cut(s)	110, 316, 326, 329, 422, 473, 531, 775, 869
MhlI	GDGCHC	2 cut(s)	118, 837
MluCI	AATT	5 cut(s)	62, 332, 445, 483, 755
MlyI	GAGTC	1 cut(s)	765
MmeI	TCCRAC	2 cut(s)	703, 781
MnlI	CCTC	9 cut(s)	57, 250, 300, 357, 451, 573, 651, 809, 891
MroI	TCCGGA	1 cut(s)	759
MseI	TTAA	3 cut(s)	284, 525, 647
MslI	CAYNNNNRTG	2 cut(s)	177, 672
MspA1I	CMGCKG	1 cut(s)	917
MspI	CCGG	3 cut(s)	185, 760, 782
MspR9I	CCNGG	2 cut(s)	185, 543
Mva1269I	GAATGC	1 cut(s)	785
MvaI	CCWGG	1 cut(s)	543
MwoI	GCNNNNNNNGC	4 cut(s)	10, 73, 113, 535
NciI	CCSGG	1 cut(s)	185
NdeI	CATATG	1 cut(s)	633
NdeII	GATC	6 cut(s)	162, 169, 193, 289, 371, 611
NheI	GCTAGC	1 cut(s)	137
NlaIII	CATG	3 cut(s)	300, 391, 901
NspI	RCATGY	1 cut(s)	300
PaeR7I	CTCGAG	1 cut(s)	48
PciSI	GCTCTTC	1 cut(s)	123
PcsI	WCGNNNNNNNCGW	1 cut(s)	171
PctI	GAATGC	1 cut(s)	785
PfeI	GAWTC	5 cut(s)	80, 146, 230, 367, 739
PkrI	GCNGC	1 cut(s)	919
PleI	GAGTC	1 cut(s)	765
PpsI	GAGTC	1 cut(s)	765
Psp124BI	GAGCTC	1 cut(s)	837
Psp6I	CCWGG	1 cut(s)	541
PspGI	CCWGG	1 cut(s)	541
PspXI	VCTCGAGB	1 cut(s)	48
PstNI	CAGNNNCTG	1 cut(s)	134
RsaI	GTAC	2 cut(s)	133, 690
RsaNI	GTAC	2 cut(s)	132, 689
RseI	CAYNNNNRTG	2 cut(s)	177, 672
SacI	GAGCTC	1 cut(s)	837
SapI	GCTCTTC	1 cut(s)	123
SaqAI	TTAA	3 cut(s)	284, 525, 647
SatI	GCNGC	1 cut(s)	918
Sau3AI	GATC	6 cut(s)	162, 169, 193, 289, 371, 611
SchI	GAGTC	1 cut(s)	765
ScrFI	CCNGG	2 cut(s)	185, 543
SduI	GDGCHC	2 cut(s)	118, 837
SfaNI	GCATC	3 cut(s)	189, 563, 670
Sfr274I	CTCGAG	1 cut(s)	48
SlaI	CTCGAG	1 cut(s)	48
SmiMI	CAYNNNNRTG	2 cut(s)	177, 672
SmlI	CTYRAG	2 cut(s)	48, 830
SmoI	CTYRAG	2 cut(s)	48, 830
Sse9I	AATT	5 cut(s)	62, 332, 445, 483, 755
SsiI	CCGC	1 cut(s)	915
SspI	AATATT	1 cut(s)	906
SspMI	CTAG	3 cut(s)	138, 497, 684
SstI	GAGCTC	1 cut(s)	837
StyD4I	CCNGG	2 cut(s)	183, 541
StyI	CCWWGG	1 cut(s)	204
TaaI	ACNGT	1 cut(s)	214
TaiI	ACGT	1 cut(s)	430
TaqI	TCGA	3 cut(s)	49, 370, 610
TasI	AATT	5 cut(s)	62, 332, 445, 483, 755
TfiI	GAWTC	5 cut(s)	80, 146, 230, 367, 739
Tru1I	TTAA	3 cut(s)	284, 525, 647
Tru9I	TTAA	3 cut(s)	284, 525, 647
TscAI	CASTG	1 cut(s)	556
TseI	GCWGC	1 cut(s)	917
TspDTI	ATGAA	3 cut(s)	110, 278, 432
TspRI	CASTG	1 cut(s)	556
XapI	RAATTY	3 cut(s)	445, 483, 755
XceI	RCATGY	1 cut(s)	300
XhoI	CTCGAG	1 cut(s)	48
XmiI	GTMKAC	1 cut(s)	216
XspI	CTAG	3 cut(s)	138, 497, 684

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.