Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0004919

Physical Location & Seq

Genomic Coordinates Reverse (-)

18974278 .. 18978072

Gene Structure 3795 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G200600.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGGCTGTTCCGGAAGTTGACAAGAAAATGCTTGGAGAGCTTGAAGCAATGGGATTTCCAAGACCTCGAGCAACACGAGCACTTCATTATTCTGGCAATGCTAGTTTAGGGGCTGCTATAGATTGGATCATTGATCACGAGAACGATGCCGACATTGATGAGATGCCCTTGGTAACAGTGGACATTAGCATTGGATCTCCAGAACCATTCTATTTCACAGAAGCGATGAAAATAAAAGCACAGGAGTTAAGGGATCAAGCACGCAAGAAGAAGGAAGAAGAAGAAAAGAAGTTGGAACGAGAAAGGGAGAAGGGGAGGATTCAATCTGGTAAGCAACTCATAGAAGCAAAACGAAGTTTAGAAGAAAATGAAAGAAAACGTAATATAGAGTTTCGGAAAGCTGAGAAAGAGGAAGAGAAACGAGCAAGAGAAAGAATTCGCTGGAAACTAAAACAGGATAAGTTAGAAAGAAGGGTCAATGTTGGATTGCCACCAGAACAGCTTGTAGCTGAGGAACGTACACCTGCGGTGAGGATAGAACAGAATCCATTTCCAGTCCGTTCTGTTGCAAAATCAGAACGTATGAGAGAATGTTTACGGTCCTTGAGGCGCAACCACAAGGATGACGATGCTAGAGTACGACAAGCCTTCCAGACCCTGCTGATTTATGTTGGAAATGTTGCAAGGAATCCTAATGAAGAAAAATTCAGGAAGATCAGACTCAGTAATCCGTTATTCTTGGATAGAGTTGGGAGTTTGACTGGAGGAATTGAGTTCCTTGAGCTCTGTGGGTTTGAGACAACTGAAGGGGAAGAGTTTTTGTATCTTCCTCACAATAAGGTTGACATGGCAACATTAAACTCAGCTGCTTCTGAGCTGAAGTCTGCATTGACAAACCCGTTCTTTGGCCTTCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PUB UBA

Protein Analysis

306

Amino Acids

35.31

Weight (kDa)

8.37

Isoelectric Point (pI)

63.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004919)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48690 AT5G48690 AT5G48690
fragaria_vesca	FvH4_2g18750 FvH4_2g18750
malus_domestica	MD05G1173000.v1.1
prunus_persica	Prupe.8G200600_v2.0.a1 Prupe.8G200600_v2.0.a1 Prupe.8G200600_v2.0.a1 Prupe.8G200600_v2.0.a1 Prupe.8G200600_v2.0.a1
pyrus_communis	pycom05g15970
rosa_chinensis	RchiOBHm_Chr6g0284421 RchiOBHm_Chr6g0284441
rosa_laevigata	RLG00000012745
rosa_multiflora	Rmu_sc0005959.1_g000001 Rmu_sc0032923.1_g000001
rosa_roxburghii	Rroxscaffold_7G00184710
rosa_rugosa	Rorug06G0163100 Rorug06G0163200 Rorug06G0163300 Rorug06G0163400 Rorug06G0163500 Rorug06G0163600 Rorug06G0163700
rosa_samantha	Rh6AG275900 Rh6BG276300 Rh6CG278300 Rh6CG278400
rosa_wichuraiana	Rw6G023740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	532
Acc36I	ACCTGC	1 cut(s)	532
AccIII	TCCGGA	1 cut(s)	10
AciI	CCGC	1 cut(s)	527
AclWI	GGATC	3 cut(s)	134, 202, 261
AcsI	RAATTY	2 cut(s)	435, 704
AcuI	CTGAAG	2 cut(s)	825, 899
AfaI	GTAC	2 cut(s)	520, 639
AfiI	CCNNNNNNNGG	1 cut(s)	905
AgsI	TTSAA	2 cut(s)	44, 323
AluBI	AGCT	7 cut(s)	40, 401, 502, 509, 784, 866, 877
AluI	AGCT	7 cut(s)	40, 401, 502, 509, 784, 866, 877
Alw21I	GWGCWC	2 cut(s)	82, 786
Alw26I	GTCTC	1 cut(s)	791
AlwI	GGATC	3 cut(s)	134, 202, 261
AlwNI	CAGNNNCTG	1 cut(s)	658
Ama87I	CYCGRG	1 cut(s)	66
Aor13HI	TCCGGA	1 cut(s)	10
AoxI	GGCC	1 cut(s)	907
ApeKI	GCWGC	2 cut(s)	113, 866
ApoI	RAATTY	2 cut(s)	435, 704
Asp700I	GAANNNNTTC	1 cut(s)	435
AspLEI	GCGC	1 cut(s)	612
AspS9I	GGNCC	1 cut(s)	600
AsuHPI	GGTGA	1 cut(s)	541
AvaI	CYCGRG	1 cut(s)	66
AvaII	GGWCC	1 cut(s)	600
BanII	GRGCYC	1 cut(s)	786
BauI	CACGAG	2 cut(s)	75, 137
Bbv12I	GWGCWC	2 cut(s)	82, 786
BbvCI	CCTCAGC	1 cut(s)	510
BbvI	GCAGC	2 cut(s)	100, 853
BcgI	CGANNNNNNTGC	2 cut(s)	128, 162
BclI	TGATCA	1 cut(s)	133
BcoDI	GTCTC	1 cut(s)	791
BfaI	CTAG	2 cut(s)	102, 633
BfmI	CTRYAG	2 cut(s)	117, 914
BfuAI	ACCTGC	1 cut(s)	532
BisI	GCNGC	2 cut(s)	114, 867
BlsI	GCNGC	2 cut(s)	115, 868
Bme18I	GGWCC	1 cut(s)	600
BmeT110I	CYCGRG	1 cut(s)	66
BmgT120I	GGNCC	1 cut(s)	600
BmsI	GCATC	3 cut(s)	136, 153, 619
BpmI	CTGGAG	2 cut(s)	183, 783
Bpu10I	CCTNAGC	1 cut(s)	510
BpuEI	CTTGAG	2 cut(s)	625, 800
BsaJI	CCNNGG	1 cut(s)	168
BsaWI	WCCGGW	1 cut(s)	10
Bsc4I	CCNNNNNNNGG	1 cut(s)	905
Bse1I	ACTGG	2 cut(s)	554, 766
Bse3DI	GCAATG	2 cut(s)	54, 103
BseAI	TCCGGA	1 cut(s)	10
BseDI	CCNNGG	1 cut(s)	168
BseGI	GGATG	1 cut(s)	628
BseLI	CCNNNNNNNGG	1 cut(s)	905
BseMI	GCAATG	2 cut(s)	54, 103
BseMII	CTCAG	5 cut(s)	393, 501, 736, 864, 876
BseNI	ACTGG	2 cut(s)	554, 766
BseXI	GCAGC	2 cut(s)	100, 853
BshFI	GGCC	1 cut(s)	909
BsiHKAI	GWGCWC	2 cut(s)	82, 786
BsiHKCI	CYCGRG	1 cut(s)	66
BsiSI	CCGG	1 cut(s)	11
BslI	CCNNNNNNNGG	1 cut(s)	905
BsmAI	GTCTC	1 cut(s)	791
BsnI	GGCC	1 cut(s)	909
BsoBI	CYCGRG	1 cut(s)	66
Bsp1286I	GDGCHC	2 cut(s)	82, 786
Bsp13I	TCCGGA	1 cut(s)	10
Bsp143I	GATC	5 cut(s)	126, 133, 194, 253, 714
BspACI	CCGC	1 cut(s)	527
BspANI	GGCC	1 cut(s)	909
BspCNI	CTCAG	5 cut(s)	394, 502, 735, 865, 875
BspEI	TCCGGA	1 cut(s)	10
BspMI	ACCTGC	1 cut(s)	532
BspPI	GGATC	3 cut(s)	134, 202, 261
BsrDI	GCAATG	2 cut(s)	54, 103
BsrI	ACTGG	2 cut(s)	554, 766
BssECI	CCNNGG	1 cut(s)	168
BssMI	GATC	5 cut(s)	126, 133, 194, 253, 714
BssSI	CACGAG	2 cut(s)	75, 137
BssT1I	CCWWGG	1 cut(s)	168
Bst2BI	CACGAG	2 cut(s)	75, 137
Bst4CI	ACNGT	2 cut(s)	178, 600
Bst6I	CTCTTC	2 cut(s)	408, 807
BstC8I	GCNNGC	1 cut(s)	262
BstDEI	CTNAG	5 cut(s)	402, 510, 722, 862, 873
BstF5I	GGATG	1 cut(s)	628
BstHHI	GCGC	1 cut(s)	612
BstKTI	GATC	5 cut(s)	129, 136, 197, 256, 717
BstMAI	GTCTC	1 cut(s)	791
BstMBI	GATC	5 cut(s)	126, 133, 194, 253, 714
BstMWI	GCNNNNNNNGC	2 cut(s)	37, 77
BstSFI	CTRYAG	2 cut(s)	117, 914
BstV1I	GCAGC	2 cut(s)	100, 853
BstX2I	RGATCY	1 cut(s)	194
BstYI	RGATCY	1 cut(s)	194
BsuRI	GGCC	1 cut(s)	909
BtgZI	GCGATG	1 cut(s)	239
BtsCI	GGATG	1 cut(s)	628
BtsIMutI	CAGTG	1 cut(s)	183
BveI	ACCTGC	1 cut(s)	532
Cac8I	GCNNGC	1 cut(s)	262
CaiI	CAGNNNCTG	1 cut(s)	658
CfoI	GCGC	1 cut(s)	612
Cfr13I	GGNCC	1 cut(s)	600
Csp6I	GTAC	2 cut(s)	519, 638
CviAII	CATG	1 cut(s)	847
CviQI	GTAC	2 cut(s)	519, 638
DdeI	CTNAG	5 cut(s)	402, 510, 722, 862, 873
DpnI	GATC	5 cut(s)	128, 135, 196, 255, 716
DpnII	GATC	5 cut(s)	126, 133, 194, 253, 714
Eam1104I	CTCTTC	2 cut(s)	408, 807
EarI	CTCTTC	2 cut(s)	408, 807
Ecl136II	GAGCTC	1 cut(s)	784
Eco130I	CCWWGG	1 cut(s)	168
Eco24I	GRGCYC	1 cut(s)	786
Eco47I	GGWCC	1 cut(s)	600
Eco53kI	GAGCTC	1 cut(s)	784
Eco57I	CTGAAG	2 cut(s)	825, 899
Eco88I	CYCGRG	1 cut(s)	66
EcoICRI	GAGCTC	1 cut(s)	784
EcoRI	GAATTC	1 cut(s)	435
EcoT14I	CCWWGG	1 cut(s)	168
EcoT38I	GRGCYC	1 cut(s)	786
ErhI	CCWWGG	1 cut(s)	168
FaeI	CATG	1 cut(s)	850
FaiI	YATR	6 cut(s)	119, 341, 386, 584, 669, 848
FatI	CATG	1 cut(s)	846
FbaI	TGATCA	1 cut(s)	133
Fnu4HI	GCNGC	2 cut(s)	114, 867
FokI	GGATG	1 cut(s)	635
FriOI	GRGCYC	1 cut(s)	786
Fsp4HI	GCNGC	2 cut(s)	114, 867
FspBI	CTAG	2 cut(s)	102, 633
GlaI	GCGC	1 cut(s)	611
GluI	GCNGC	2 cut(s)	114, 867
GsuI	CTGGAG	2 cut(s)	183, 783
HaeIII	GGCC	1 cut(s)	909
HapII	CCGG	1 cut(s)	11
HhaI	GCGC	1 cut(s)	612
Hin1II	CATG	1 cut(s)	850
Hin6I	GCGC	1 cut(s)	610
HinP1I	GCGC	1 cut(s)	610
HincII	GTYRAC	2 cut(s)	19, 844
HindII	GTYRAC	2 cut(s)	19, 844
HinfI	GANTC	4 cut(s)	319, 544, 688, 720
HpaII	CCGG	1 cut(s)	11
HphI	GGTGA	1 cut(s)	541
Hpy166II	GTNNAC	5 cut(s)	19, 181, 521, 596, 844
Hpy188I	TCNGA	4 cut(s)	396, 577, 719, 874
Hpy188III	TCNNGA	5 cut(s)	11, 137, 200, 652, 709
Hpy8I	GTNNAC	5 cut(s)	19, 181, 521, 596, 844
HpyAV	CCTTC	5 cut(s)	265, 304, 465, 658, 800
HpyCH4III	ACNGT	2 cut(s)	178, 600
HpyCH4IV	ACGT	3 cut(s)	379, 517, 580
HpyCH4V	TGCA	3 cut(s)	569, 683, 887
HpyF10VI	GCNNNNNNNGC	2 cut(s)	37, 77
HpyF3I	CTNAG	5 cut(s)	402, 510, 722, 862, 873
HpySE526I	ACGT	3 cut(s)	379, 517, 580
Hsp92II	CATG	1 cut(s)	850
HspAI	GCGC	1 cut(s)	610
Kpn2I	TCCGGA	1 cut(s)	10
Ksp22I	TGATCA	1 cut(s)	133
Kzo9I	GATC	5 cut(s)	126, 133, 194, 253, 714
Lsp1109I	GCAGC	2 cut(s)	100, 853
LweI	GCATC	3 cut(s)	136, 153, 619
MaeI	CTAG	2 cut(s)	102, 633
MaeII	ACGT	3 cut(s)	379, 517, 580
MaeIII	GTNAC	1 cut(s)	172
MalI	GATC	5 cut(s)	128, 135, 196, 255, 716
MboI	GATC	5 cut(s)	126, 133, 194, 253, 714
MflI	RGATCY	1 cut(s)	194
MhlI	GDGCHC	2 cut(s)	82, 786
MluCI	AATT	3 cut(s)	435, 704, 768
MlyI	GAGTC	1 cut(s)	714
MmeI	TCCRAC	3 cut(s)	273, 463, 652
MnlI	CCTC	8 cut(s)	75, 309, 403, 505, 525, 600, 758, 840
MroI	TCCGGA	1 cut(s)	10
MroXI	GAANNNNTTC	1 cut(s)	435
MseI	TTAA	2 cut(s)	248, 857
MslI	CAYNNNNRTG	1 cut(s)	621
MspA1I	CMGCKG	1 cut(s)	866
MspI	CCGG	1 cut(s)	11
MwoI	GCNNNNNNNGC	2 cut(s)	37, 77
NdeII	GATC	5 cut(s)	126, 133, 194, 253, 714
NlaIII	CATG	1 cut(s)	850
PaeR7I	CTCGAG	1 cut(s)	66
PaqCI	CACCTGC	1 cut(s)	532
PcsI	WCGNNNNNNNCGW	1 cut(s)	73
PdmI	GAANNNNTTC	1 cut(s)	435
PfeI	GAWTC	3 cut(s)	319, 544, 688
PkrI	GCNGC	2 cut(s)	115, 868
PleI	GAGTC	1 cut(s)	714
PpsI	GAGTC	1 cut(s)	714
Psp124BI	GAGCTC	1 cut(s)	786
PspPI	GGNCC	1 cut(s)	600
PspXI	VCTCGAGB	1 cut(s)	66
PstNI	CAGNNNCTG	1 cut(s)	658
PsuI	RGATCY	1 cut(s)	194
PvuII	CAGCTG	1 cut(s)	866
RsaI	GTAC	2 cut(s)	520, 639
RsaNI	GTAC	2 cut(s)	519, 638
RseI	CAYNNNNRTG	1 cut(s)	621
SacI	GAGCTC	1 cut(s)	786
SaqAI	TTAA	2 cut(s)	248, 857
SatI	GCNGC	2 cut(s)	114, 867
Sau3AI	GATC	5 cut(s)	126, 133, 194, 253, 714
Sau96I	GGNCC	1 cut(s)	600
SchI	GAGTC	1 cut(s)	714
SduI	GDGCHC	2 cut(s)	82, 786
SfaNI	GCATC	3 cut(s)	136, 153, 619
SfcI	CTRYAG	2 cut(s)	117, 914
Sfr274I	CTCGAG	1 cut(s)	66
SinI	GGWCC	1 cut(s)	600
SlaI	CTCGAG	1 cut(s)	66
SmiMI	CAYNNNNRTG	1 cut(s)	621
SmlI	CTYRAG	3 cut(s)	66, 604, 779
SmoI	CTYRAG	3 cut(s)	66, 604, 779
Sse9I	AATT	3 cut(s)	435, 704, 768
SsiI	CCGC	1 cut(s)	527
SspMI	CTAG	2 cut(s)	102, 633
SstI	GAGCTC	1 cut(s)	786
StyI	CCWWGG	1 cut(s)	168
TaaI	ACNGT	2 cut(s)	178, 600
TaiI	ACGT	3 cut(s)	382, 520, 583
TaqI	TCGA	1 cut(s)	67
TasI	AATT	3 cut(s)	435, 704, 768
TfiI	GAWTC	3 cut(s)	319, 544, 688
Tru1I	TTAA	2 cut(s)	248, 857
Tru9I	TTAA	2 cut(s)	248, 857
TscAI	CASTG	1 cut(s)	183
TseI	GCWGC	2 cut(s)	113, 866
TspDTI	ATGAA	4 cut(s)	74, 242, 384, 711
TspGWI	ACGGA	2 cut(s)	548, 720
TspRI	CASTG	1 cut(s)	183
VpaK11BI	GGWCC	1 cut(s)	600
XapI	RAATTY	2 cut(s)	435, 704
XhoI	CTCGAG	1 cut(s)	66
XmnI	GAANNNNTTC	1 cut(s)	435
XspI	CTAG	2 cut(s)	102, 633

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.