Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0032923.1

Orthogroup ID

OG0004919

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 498

Gene Structure 498 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0032923.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 171 bp

atggctgttcctcgagtaaacaagaaattgcttcaagagcttgaatcaatgggatttcccacagctcgggcaactcgggctcttcattattcaggtactgctagcttagaggcttgtatagactggaccattgatcacgcgaatgacccggacattgatcagatgcccttg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PUB UBA

Protein Analysis

57

Amino Acids

6.34

Weight (kDa)

5.0

Isoelectric Point (pI)

50.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004919)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48690 AT5G48690 AT5G48690
fragaria_vesca	FvH4_2g18750 FvH4_2g18750
malus_domestica	MD05G1173000.v1.1
prunus_persica	Prupe.8G200600_v2.0.a1 Prupe.8G200600_v2.0.a1 Prupe.8G200600_v2.0.a1 Prupe.8G200600_v2.0.a1 Prupe.8G200600_v2.0.a1
pyrus_communis	pycom05g15970
rosa_chinensis	RchiOBHm_Chr6g0284421 RchiOBHm_Chr6g0284441
rosa_laevigata	RLG00000012745
rosa_multiflora	Rmu_sc0005959.1_g000001 Rmu_sc0032923.1_g000001
rosa_roxburghii	Rroxscaffold_7G00184710
rosa_rugosa	Rorug06G0163100 Rorug06G0163200 Rorug06G0163300 Rorug06G0163400 Rorug06G0163500 Rorug06G0163600 Rorug06G0163700
rosa_samantha	Rh6AG275900 Rh6BG276300 Rh6CG278300 Rh6CG278400
rosa_wichuraiana	Rw6G023740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	140
AfaI	GTAC	1 cut(s)	97
AfiI	CCNNNNNNNGG	1 cut(s)	66
AgsI	TTSAA	2 cut(s)	35, 44
AluBI	AGCT	3 cut(s)	40, 65, 105
AluI	AGCT	3 cut(s)	40, 65, 105
AlwNI	CAGNNNCTG	1 cut(s)	98
Ama87I	CYCGRG	3 cut(s)	12, 66, 75
AspS9I	GGNCC	1 cut(s)	126
AsuC2I	CCSGG	1 cut(s)	149
AsuNHI	GCTAGC	1 cut(s)	101
AvaI	CYCGRG	3 cut(s)	12, 66, 75
AvaII	GGWCC	1 cut(s)	126
BanII	GRGCYC	1 cut(s)	82
BclI	TGATCA	2 cut(s)	133, 157
BcnI	CCSGG	1 cut(s)	149
BfaI	CTAG	1 cut(s)	102
Bme1390I	CCNGG	1 cut(s)	149
Bme18I	GGWCC	1 cut(s)	126
BmeT110I	CYCGRG	3 cut(s)	12, 66, 75
BmgT120I	GGNCC	1 cut(s)	126
BmrFI	CCNGG	1 cut(s)	149
BmsI	GCATC	1 cut(s)	153
BmtI	GCTAGC	1 cut(s)	105
BpuMI	CCSGG	1 cut(s)	149
Bsc4I	CCNNNNNNNGG	1 cut(s)	66
Bse1I	ACTGG	1 cut(s)	128
BseLI	CCNNNNNNNGG	1 cut(s)	66
BseNI	ACTGG	1 cut(s)	128
Bsh1236I	CGCG	1 cut(s)	140
BsiHKCI	CYCGRG	3 cut(s)	12, 66, 75
BsiSI	CCGG	1 cut(s)	149
BslI	CCNNNNNNNGG	1 cut(s)	66
BsoBI	CYCGRG	3 cut(s)	12, 66, 75
Bsp1286I	GDGCHC	1 cut(s)	82
Bsp143I	GATC	2 cut(s)	133, 157
BspFNI	CGCG	1 cut(s)	140
BspOI	GCTAGC	1 cut(s)	105
BspQI	GCTCTTC	1 cut(s)	87
BsrI	ACTGG	1 cut(s)	128
BssMI	GATC	2 cut(s)	133, 157
Bst6I	CTCTTC	1 cut(s)	87
BstC8I	GCNNGC	1 cut(s)	103
BstDEI	CTNAG	1 cut(s)	106
BstFNI	CGCG	1 cut(s)	140
BstKTI	GATC	2 cut(s)	136, 160
BstMBI	GATC	2 cut(s)	133, 157
BstMWI	GCNNNNNNNGC	2 cut(s)	37, 77
BstSCI	CCNGG	1 cut(s)	147
BstUI	CGCG	1 cut(s)	140
Cac8I	GCNNGC	1 cut(s)	103
CaiI	CAGNNNCTG	1 cut(s)	98
Cfr13I	GGNCC	1 cut(s)	126
Csp6I	GTAC	1 cut(s)	96
CviJI	RGCY	6 cut(s)	5, 40, 65, 80, 105, 113
CviKI_1	RGCY	6 cut(s)	5, 40, 65, 80, 105, 113
CviQI	GTAC	1 cut(s)	96
DdeI	CTNAG	1 cut(s)	106
DpnI	GATC	2 cut(s)	135, 159
DpnII	GATC	2 cut(s)	133, 157
Eam1104I	CTCTTC	1 cut(s)	87
EarI	CTCTTC	1 cut(s)	87
Eco24I	GRGCYC	1 cut(s)	82
Eco47I	GGWCC	1 cut(s)	126
Eco88I	CYCGRG	3 cut(s)	12, 66, 75
EcoT38I	GRGCYC	1 cut(s)	82
FaiI	YATR	1 cut(s)	119
FbaI	TGATCA	2 cut(s)	133, 157
FriOI	GRGCYC	1 cut(s)	82
FspBI	CTAG	1 cut(s)	102
HapII	CCGG	1 cut(s)	149
HinfI	GANTC	1 cut(s)	44
HpaII	CCGG	1 cut(s)	149
Hpy166II	GTNNAC	1 cut(s)	19
Hpy188I	TCNGA	1 cut(s)	162
Hpy188III	TCNNGA	1 cut(s)	35
Hpy8I	GTNNAC	1 cut(s)	19
HpyF10VI	GCNNNNNNNGC	2 cut(s)	37, 77
HpyF3I	CTNAG	1 cut(s)	106
Ksp22I	TGATCA	2 cut(s)	133, 157
Kzo9I	GATC	2 cut(s)	133, 157
LguI	GCTCTTC	1 cut(s)	87
LpnPI	CCDG	3 cut(s)	78, 109, 162
LweI	GCATC	1 cut(s)	153
MaeI	CTAG	1 cut(s)	102
MalI	GATC	2 cut(s)	135, 159
MboI	GATC	2 cut(s)	133, 157
MboII	GAAGA	1 cut(s)	74
MhlI	GDGCHC	1 cut(s)	82
MluCI	AATT	1 cut(s)	26
MnlI	CCTC	2 cut(s)	21, 103
MslI	CAYNNNNRTG	1 cut(s)	141
MspI	CCGG	1 cut(s)	149
MspR9I	CCNGG	1 cut(s)	149
MvnI	CGCG	1 cut(s)	140
MwoI	GCNNNNNNNGC	2 cut(s)	37, 77
NciI	CCSGG	1 cut(s)	149
NdeII	GATC	2 cut(s)	133, 157
NheI	GCTAGC	1 cut(s)	101
PaeR7I	CTCGAG	1 cut(s)	12
PciSI	GCTCTTC	1 cut(s)	87
PfeI	GAWTC	1 cut(s)	44
PspPI	GGNCC	1 cut(s)	126
PspXI	VCTCGAGB	1 cut(s)	12
PstNI	CAGNNNCTG	1 cut(s)	98
RsaI	GTAC	1 cut(s)	97
RsaNI	GTAC	1 cut(s)	96
RseI	CAYNNNNRTG	1 cut(s)	141
SapI	GCTCTTC	1 cut(s)	87
Sau3AI	GATC	2 cut(s)	133, 157
Sau96I	GGNCC	1 cut(s)	126
ScrFI	CCNGG	1 cut(s)	149
SduI	GDGCHC	1 cut(s)	82
SetI	ASST	4 cut(s)	42, 67, 97, 107
SfaNI	GCATC	1 cut(s)	153
Sfr274I	CTCGAG	1 cut(s)	12
SinI	GGWCC	1 cut(s)	126
SlaI	CTCGAG	1 cut(s)	12
SmiMI	CAYNNNNRTG	1 cut(s)	141
SmlI	CTYRAG	1 cut(s)	12
SmoI	CTYRAG	1 cut(s)	12
Sse9I	AATT	1 cut(s)	26
SspMI	CTAG	1 cut(s)	102
StyD4I	CCNGG	1 cut(s)	147
TaqI	TCGA	1 cut(s)	13
TasI	AATT	1 cut(s)	26
TfiI	GAWTC	1 cut(s)	44
TspDTI	ATGAA	1 cut(s)	74
VpaK11BI	GGWCC	1 cut(s)	126
XhoI	CTCGAG	1 cut(s)	12
XspI	CTAG	1 cut(s)	102

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.