Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004919

Physical Location & Seq

Genomic Coordinates Forward (+)

47675925 .. 47679535

Gene Structure 3611 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ25507

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGGCTGTTCCTCGAGTAAACAAGAAATTGCTTCAAGAGCTTGAATCAATGGGATTTCCCACAGCTCGGGCAACTCGGGCTCTTCATTATTCAGGTACTGCTAGCTTAGAGGCTTGTATAGACTGGATCGTTGATCACGAGAATGACCCGGACATTGATCAGATGCCCTTGGTAACAGTAGACATTGATATTGAATCTCCAGAGCCATTCCATATCACCGAGGCAATGAAAATAAAAGCACAAGAGTTAAGGGATCAAACACGCAAGAAGAGTAAAGAAGAAGAAAAGAAACTGGAATTACAAATGGAACGAGAAAGAGAGAAGGAGAGGATTCGATCTGGTAAGGAACTCATGGAAGCAAAGCAAATCTTAGAAGACAATGAAAGAAAACGTAATATAGTGTTTCGGAATTCTGAGAAAGAGGAAGAGAAACGAGCAAGAGAGAGAATTCGCTGGAAACTAGAACAAGATAAGTTAGAAAGAAGAGTTAAGCTTGGATTGCCACCAGGACACACAGCATCTGCGAAACTTTCTATACCTGTGAGGGGGGAAATCCAGAAATCATTGCCTGTCCAATCTGTTGCAAAGTCAGAACATATAAGAGAGCGTTTAAGGTCTCTGAGGCGCAACCACAAGGATGATGATGCTAGAGTACGACGAGCCTTCCAAACTCTGCTGATTTATGTTGGAAATGTTGCAAAGAATCCCGATCAAGAAAAATTCCGGAAGATTAGACTCGGTAATCCGTCATTCTTGGATAGAGTTGGAAGTTTGATTGGAGGAATAGAGTTTCTTGAGCTCTGTGGGTTTGAGAGAACTGAAGCAGGAGAGTTCTTGTATCTTCCTCGTGATAAGGTTGACATGGCCACATTATACTCCGCTGCTTCTGAACTGAAGTCTGCATTGACAAACCCTTTCTTTGGCCTTCTGTCTAGAGATGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PUB UBA

Protein Analysis

314

Amino Acids

36.4

Weight (kDa)

9.02

Isoelectric Point (pI)

55.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UBA_7	PF22562	7 - 54	1.7e-16	UBA-like domain
PUB	PF09409	217 - 287	2.1e-20	PUB domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004919)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48690 AT5G48690 AT5G48690
fragaria_vesca	FvH4_2g18750 FvH4_2g18750
malus_domestica	MD05G1173000.v1.1
prunus_persica	Prupe.8G200600_v2.0.a1 Prupe.8G200600_v2.0.a1 Prupe.8G200600_v2.0.a1 Prupe.8G200600_v2.0.a1 Prupe.8G200600_v2.0.a1
pyrus_communis	pycom05g15970
rosa_chinensis	RchiOBHm_Chr6g0284421 RchiOBHm_Chr6g0284441
rosa_laevigata	RLG00000012745
rosa_multiflora	Rmu_sc0005959.1_g000001 Rmu_sc0032923.1_g000001
rosa_roxburghii	Rroxscaffold_7G00184710
rosa_rugosa	Rorug06G0163100 Rorug06G0163200 Rorug06G0163300 Rorug06G0163400 Rorug06G0163500 Rorug06G0163600 Rorug06G0163700
rosa_samantha	Rh6AG275900 Rh6BG276300 Rh6CG278300 Rh6CG278400
rosa_wichuraiana	Rw6G023740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	180
AccIII	TCCGGA	1 cut(s)	723
AciI	CCGC	1 cut(s)	879
AclWI	GGATC	2 cut(s)	134, 261
AcoI	YGGCCR	1 cut(s)	864
AcsI	RAATTY	3 cut(s)	409, 447, 719
AcuI	CTGAAG	2 cut(s)	840, 914
AfaI	GTAC	2 cut(s)	97, 654
AfiI	CCNNNNNNNGG	3 cut(s)	66, 545, 920
AgsI	TTSAA	3 cut(s)	35, 44, 194
AjnI	CCWGG	1 cut(s)	505
AluBI	AGCT	5 cut(s)	40, 65, 105, 493, 799
AluI	AGCT	5 cut(s)	40, 65, 105, 493, 799
Alw21I	GWGCWC	1 cut(s)	801
Alw26I	GTCTC	1 cut(s)	621
AlwI	GGATC	2 cut(s)	134, 261
AlwNI	CAGNNNCTG	2 cut(s)	98, 521
Ama87I	CYCGRG	3 cut(s)	12, 66, 75
Aor13HI	TCCGGA	1 cut(s)	723
AoxI	GGCC	2 cut(s)	864, 922
ApeKI	GCWGC	1 cut(s)	881
ApoI	RAATTY	3 cut(s)	409, 447, 719
AspLEI	GCGC	1 cut(s)	627
AsuC2I	CCSGG	1 cut(s)	149
AsuHPI	GGTGA	1 cut(s)	208
AsuNHI	GCTAGC	1 cut(s)	101
AvaI	CYCGRG	3 cut(s)	12, 66, 75
BalI	TGGCCA	1 cut(s)	866
BanII	GRGCYC	2 cut(s)	82, 801
BauI	CACGAG	2 cut(s)	137, 846
BbsI	GAAGAC	1 cut(s)	381
Bbv12I	GWGCWC	1 cut(s)	801
BbvI	GCAGC	1 cut(s)	868
BciT130I	CCWGG	1 cut(s)	507
BclI	TGATCA	2 cut(s)	133, 157
BcnI	CCSGG	1 cut(s)	149
BcoDI	GTCTC	1 cut(s)	621
BfaI	CTAG	4 cut(s)	102, 461, 648, 933
BisI	GCNGC	1 cut(s)	882
BlsI	GCNGC	1 cut(s)	883
Bme1390I	CCNGG	2 cut(s)	149, 507
BmeT110I	CYCGRG	3 cut(s)	12, 66, 75
BmrFI	CCNGG	2 cut(s)	149, 507
BmsI	GCATC	3 cut(s)	153, 527, 634
BmtI	GCTAGC	1 cut(s)	105
BpiI	GAAGAC	1 cut(s)	381
BpmI	CTGGAG	1 cut(s)	183
BpuEI	CTTGAG	1 cut(s)	815
BpuMI	CCSGG	1 cut(s)	149
BsaI	GGTCTC	1 cut(s)	621
BsaJI	CCNNGG	2 cut(s)	168, 219
BsaWI	WCCGGW	1 cut(s)	723
Bsc4I	CCNNNNNNNGG	3 cut(s)	66, 545, 920
Bse1I	ACTGG	2 cut(s)	128, 297
Bse3DI	GCAATG	2 cut(s)	231, 563
BseAI	TCCGGA	1 cut(s)	723
BseBI	CCWGG	1 cut(s)	507
BseDI	CCNNGG	2 cut(s)	168, 219
BseGI	GGATG	1 cut(s)	643
BseLI	CCNNNNNNNGG	3 cut(s)	66, 545, 920
BseMI	GCAATG	2 cut(s)	231, 563
BseMII	CTCAG	2 cut(s)	405, 611
BseNI	ACTGG	2 cut(s)	128, 297
BseXI	GCAGC	1 cut(s)	868
BshFI	GGCC	2 cut(s)	866, 924
BsiHKAI	GWGCWC	1 cut(s)	801
BsiHKCI	CYCGRG	3 cut(s)	12, 66, 75
BsiSI	CCGG	2 cut(s)	149, 724
BslI	CCNNNNNNNGG	3 cut(s)	66, 545, 920
BsmAI	GTCTC	1 cut(s)	621
BsnI	GGCC	2 cut(s)	866, 924
Bso31I	GGTCTC	1 cut(s)	621
BsoBI	CYCGRG	3 cut(s)	12, 66, 75
Bsp1286I	GDGCHC	2 cut(s)	82, 801
Bsp13I	TCCGGA	1 cut(s)	723
Bsp143I	GATC	6 cut(s)	126, 133, 157, 253, 335, 709
BspACI	CCGC	1 cut(s)	879
BspANI	GGCC	2 cut(s)	866, 924
BspCNI	CTCAG	2 cut(s)	406, 612
BspEI	TCCGGA	1 cut(s)	723
BspOI	GCTAGC	1 cut(s)	105
BspPI	GGATC	2 cut(s)	134, 261
BspQI	GCTCTTC	1 cut(s)	87
BspTNI	GGTCTC	1 cut(s)	621
BsrDI	GCAATG	2 cut(s)	231, 563
BsrI	ACTGG	2 cut(s)	128, 297
BssECI	CCNNGG	2 cut(s)	168, 219
BssMI	GATC	6 cut(s)	126, 133, 157, 253, 335, 709
BssSI	CACGAG	2 cut(s)	137, 846
BssT1I	CCWWGG	1 cut(s)	168
Bst2BI	CACGAG	2 cut(s)	137, 846
Bst2UI	CCWGG	1 cut(s)	507
Bst4CI	ACNGT	1 cut(s)	178
Bst6I	CTCTTC	4 cut(s)	87, 263, 420, 478
BstC8I	GCNNGC	1 cut(s)	103
BstDEI	CTNAG	4 cut(s)	106, 370, 414, 620
BstF5I	GGATG	1 cut(s)	643
BstHHI	GCGC	1 cut(s)	627
BstKTI	GATC	6 cut(s)	129, 136, 160, 256, 338, 712
BstMAI	GTCTC	1 cut(s)	621
BstMBI	GATC	6 cut(s)	126, 133, 157, 253, 335, 709
BstMWI	GCNNNNNNNGC	3 cut(s)	37, 77, 499
BstNI	CCWGG	1 cut(s)	507
BstSCI	CCNGG	2 cut(s)	147, 505
BstV1I	GCAGC	1 cut(s)	868
BstV2I	GAAGAC	1 cut(s)	381
BsuRI	GGCC	2 cut(s)	866, 924
BtsCI	GGATG	1 cut(s)	643
Cac8I	GCNNGC	1 cut(s)	103
CaiI	CAGNNNCTG	2 cut(s)	98, 521
CfoI	GCGC	1 cut(s)	627
Csp6I	GTAC	2 cut(s)	96, 653
CviAII	CATG	2 cut(s)	352, 862
CviQI	GTAC	2 cut(s)	96, 653
DdeI	CTNAG	4 cut(s)	106, 370, 414, 620
DpnI	GATC	6 cut(s)	128, 135, 159, 255, 337, 711
DpnII	GATC	6 cut(s)	126, 133, 157, 253, 335, 709
EaeI	YGGCCR	1 cut(s)	864
Eam1104I	CTCTTC	4 cut(s)	87, 263, 420, 478
EarI	CTCTTC	4 cut(s)	87, 263, 420, 478
Ecl136II	GAGCTC	1 cut(s)	799
Eco130I	CCWWGG	1 cut(s)	168
Eco24I	GRGCYC	2 cut(s)	82, 801
Eco31I	GGTCTC	1 cut(s)	621
Eco53kI	GAGCTC	1 cut(s)	799
Eco57I	CTGAAG	2 cut(s)	840, 914
Eco88I	CYCGRG	3 cut(s)	12, 66, 75
EcoICRI	GAGCTC	1 cut(s)	799
EcoRI	GAATTC	2 cut(s)	409, 447
EcoRII	CCWGG	1 cut(s)	505
EcoT14I	CCWWGG	1 cut(s)	168
EcoT38I	GRGCYC	2 cut(s)	82, 801
ErhI	CCWWGG	1 cut(s)	168
FaeI	CATG	2 cut(s)	355, 865
FalI	AAGNNNNNCTT	2 cut(s)	353, 385
FatI	CATG	2 cut(s)	351, 861
FbaI	TGATCA	2 cut(s)	133, 157
FblI	GTMKAC	1 cut(s)	180
Fnu4HI	GCNGC	1 cut(s)	882
FokI	GGATG	1 cut(s)	650
FriOI	GRGCYC	2 cut(s)	82, 801
Fsp4HI	GCNGC	1 cut(s)	882
FspBI	CTAG	4 cut(s)	102, 461, 648, 933
GlaI	GCGC	1 cut(s)	626
GluI	GCNGC	1 cut(s)	882
GsuI	CTGGAG	1 cut(s)	183
HaeIII	GGCC	2 cut(s)	866, 924
HapII	CCGG	2 cut(s)	149, 724
HhaI	GCGC	1 cut(s)	627
Hin1II	CATG	2 cut(s)	355, 865
Hin6I	GCGC	1 cut(s)	625
HinP1I	GCGC	1 cut(s)	625
HincII	GTYRAC	1 cut(s)	859
HindII	GTYRAC	1 cut(s)	859
HindIII	AAGCTT	1 cut(s)	491
HinfI	GANTC	5 cut(s)	44, 194, 331, 703, 735
HpaII	CCGG	2 cut(s)	149, 724
HphI	GGTGA	1 cut(s)	208
Hpy166II	GTNNAC	3 cut(s)	19, 181, 859
Hpy188I	TCNGA	6 cut(s)	162, 408, 415, 592, 621, 889
Hpy8I	GTNNAC	3 cut(s)	19, 181, 859
Hpy99I	CGWCG	1 cut(s)	660
HpyAV	CCTTC	3 cut(s)	316, 673, 935
HpyCH4III	ACNGT	1 cut(s)	178
HpyCH4IV	ACGT	1 cut(s)	391
HpyCH4V	TGCA	3 cut(s)	584, 698, 902
HpyF10VI	GCNNNNNNNGC	3 cut(s)	37, 77, 499
HpyF3I	CTNAG	4 cut(s)	106, 370, 414, 620
HpySE526I	ACGT	1 cut(s)	391
Hsp92II	CATG	2 cut(s)	355, 865
HspAI	GCGC	1 cut(s)	625
Kpn2I	TCCGGA	1 cut(s)	723
Ksp22I	TGATCA	2 cut(s)	133, 157
Kzo9I	GATC	6 cut(s)	126, 133, 157, 253, 335, 709
LguI	GCTCTTC	1 cut(s)	87
Lsp1109I	GCAGC	1 cut(s)	868
LweI	GCATC	3 cut(s)	153, 527, 634
MaeI	CTAG	4 cut(s)	102, 461, 648, 933
MaeII	ACGT	1 cut(s)	391
MaeIII	GTNAC	1 cut(s)	172
MalI	GATC	6 cut(s)	128, 135, 159, 255, 337, 711
MboI	GATC	6 cut(s)	126, 133, 157, 253, 335, 709
MboII	GAAGA	9 cut(s)	74, 280, 290, 293, 386, 437, 495, 739, 833
MhlI	GDGCHC	2 cut(s)	82, 801
MlsI	TGGCCA	1 cut(s)	866
MluCI	AATT	5 cut(s)	26, 296, 409, 447, 719
MluNI	TGGCCA	1 cut(s)	866
MlyI	GAGTC	1 cut(s)	729
MmeI	TCCRAC	2 cut(s)	667, 745
MnlI	CCTC	9 cut(s)	21, 103, 214, 321, 415, 537, 615, 773, 855
Mox20I	TGGCCA	1 cut(s)	866
MroI	TCCGGA	1 cut(s)	723
MscI	TGGCCA	1 cut(s)	866
MseI	TTAA	3 cut(s)	248, 489, 611
MslI	CAYNNNNRTG	2 cut(s)	141, 636
Msp20I	TGGCCA	1 cut(s)	866
MspA1I	CMGCKG	1 cut(s)	881
MspI	CCGG	2 cut(s)	149, 724
MspR9I	CCNGG	2 cut(s)	149, 507
MvaI	CCWGG	1 cut(s)	507
MwoI	GCNNNNNNNGC	3 cut(s)	37, 77, 499
NciI	CCSGG	1 cut(s)	149
NdeII	GATC	6 cut(s)	126, 133, 157, 253, 335, 709
NheI	GCTAGC	1 cut(s)	101
NlaIII	CATG	2 cut(s)	355, 865
PaeR7I	CTCGAG	1 cut(s)	12
PciSI	GCTCTTC	1 cut(s)	87
PcsI	WCGNNNNNNNCGW	1 cut(s)	135
PfeI	GAWTC	4 cut(s)	44, 194, 331, 703
PkrI	GCNGC	1 cut(s)	883
PleI	GAGTC	1 cut(s)	729
PpsI	GAGTC	1 cut(s)	729
Psp124BI	GAGCTC	1 cut(s)	801
Psp6I	CCWGG	1 cut(s)	505
PspGI	CCWGG	1 cut(s)	505
PspXI	VCTCGAGB	1 cut(s)	12
PstNI	CAGNNNCTG	2 cut(s)	98, 521
RsaI	GTAC	2 cut(s)	97, 654
RsaNI	GTAC	2 cut(s)	96, 653
RseI	CAYNNNNRTG	2 cut(s)	141, 636
SacI	GAGCTC	1 cut(s)	801
SapI	GCTCTTC	1 cut(s)	87
SaqAI	TTAA	3 cut(s)	248, 489, 611
SatI	GCNGC	1 cut(s)	882
Sau3AI	GATC	6 cut(s)	126, 133, 157, 253, 335, 709
SchI	GAGTC	1 cut(s)	729
ScrFI	CCNGG	2 cut(s)	149, 507
SduI	GDGCHC	2 cut(s)	82, 801
SfaNI	GCATC	3 cut(s)	153, 527, 634
Sfr274I	CTCGAG	1 cut(s)	12
SlaI	CTCGAG	1 cut(s)	12
SmiMI	CAYNNNNRTG	2 cut(s)	141, 636
SmlI	CTYRAG	2 cut(s)	12, 794
SmoI	CTYRAG	2 cut(s)	12, 794
Sse9I	AATT	5 cut(s)	26, 296, 409, 447, 719
SsiI	CCGC	1 cut(s)	879
SspMI	CTAG	4 cut(s)	102, 461, 648, 933
SstI	GAGCTC	1 cut(s)	801
StyD4I	CCNGG	2 cut(s)	147, 505
StyI	CCWWGG	1 cut(s)	168
TaaI	ACNGT	1 cut(s)	178
TaiI	ACGT	1 cut(s)	394
TaqI	TCGA	2 cut(s)	13, 334
TasI	AATT	5 cut(s)	26, 296, 409, 447, 719
TfiI	GAWTC	4 cut(s)	44, 194, 331, 703
Tru1I	TTAA	3 cut(s)	248, 489, 611
Tru9I	TTAA	3 cut(s)	248, 489, 611
TseI	GCWGC	1 cut(s)	881
TspDTI	ATGAA	3 cut(s)	74, 242, 396
TspGWI	ACGGA	1 cut(s)	735
XapI	RAATTY	3 cut(s)	409, 447, 719
XbaI	TCTAGA	1 cut(s)	932
XhoI	CTCGAG	1 cut(s)	12
XmiI	GTMKAC	1 cut(s)	180
XspI	CTAG	4 cut(s)	102, 461, 648, 933

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.