Rorug06G0163200

UBX domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0004919
Physical Location & Seq
Forward (+)
23254946 .. 23257165
2220 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0163200.1

Sequence Viewer

Length: 2220 bp
ATGGCAGACTGGGTCTTATCCCCAGCTTTGCAAGTGATCTTTGACAGAATAGCATCCCCTGTCATAGAAAAGTTTGCTGACATGTGGGATTTCAAGGACAACCTCCAGAGCCTAAGAGAGACCTTGATGCAGATTCTACCTACTCTCGAGGATGCGGAAGAGCAACAATTCTCCAACAAAGCTGTCAAAATTTGGTTGTCAAAGCTCGAGAAGGCAGCTTATGATGCTGAGGACGGACTGCACTACTTGACTGCTAAATTGACTGCTAAAGGTGTGATCCCTAGCAGTTGTTTTCAATTTCTTGATCTTAAGACTGATTCCCGCATTAAAGAGATGCTTCTGGCATTAGAAACAACTGTAAACGAGGGACTTGTTAAGTTTACTTTTACAAGGCCTAATATGGTAGATCGTCGATCTTCCGTGTGGGAGACTAGCTCTTTTGTCATCAAGTCACAGATATATGGAAGAGATGATGACAAAGATAAGGTCGTGAAACTGTTGCTGTCTTCTCAAGCTTACCAGGAAGGATATGCATCTTGTATCGCAATAGTTGGTATTGGAGGAATTGGTAAGACCACTCTTGCTCAATTAGCATATAATGACGAGAGAGTAATCCAAAACTTCGATGTTAGGATGTGGATTTTTGTCTCTGATGATTTCAATGTCAAGAAGATCATGAAGACAATTATCGAGTCAGTAACGAAGGATGAGTGCAGGTTCTCAGACATTGAACTTCTTCAGTCTCAGCTTTGGCAGTTGCTGCACAATAAAAGATACCTCCTCGTGTTGGATGATGTTTGGACTTCGCATCACAATGACTGGGACAAACTAAAACCTTTGTTTAGAGGGGGTGTTGATGGATGCAAAGTCATTGTTACCACCCGCAATACAAAAACCGCACTCATGACAGACTCCCCAAATTCCCCTTTTCATTTGAAGGGCTTAGAGGAGGAGGATTGCTGGGCTTTGTTCAAGCAACAGGCTTTTGGGCGAGGAGAAGAAGAGAAATATCCACACCTTTTGCCAATTGGTAAGCAGATTGTCAGAAAATGTGGAGGTGTGCCATTAGCAGCAAAAAGTTTGGGAAGTGTAATGCGCTTCAAAAGAAATCAACAACAGTGGTTGTTTATGCAAAAAACTGAACTTTGGAAATTGGATGTGGGCGAACAAGACATTCTTCCTGCCCTGATGTTGAGTTACTTTTACCTACCATTTCATCTTAGAAGATGCTTTGCCTCCTGCTCAATATTTCCAAAAGGTTATGAATTCAACAAGCACAAGTTAATTCATCTGTGGATGGCAGAAGGCTTATTATTGGAAGACGGTAGCAAGAGACCTGAAAATGTTGGTGATGAATACTTCACCCATTTGTTGTGGATGTCTTTCTTTCAAGAAGTAGATCGATGTGATGGTGGAGGTGTAATTGGGTACAAAATGAATGATGTCATTCATGACCTCTCACAGTACGTTGCAGGGAACACAACCATGATACTTGAAAATGGTCTCCAACCAAAGAGTTTAGAAAAAATTCGCCACTCCTCTGTTGTTTATAGATACAGAGCAATTACAATTCCACGAGCTCTGTATGAAGCACAACACCTGCGAAGTCTGTTATTTATTGGAGAATCTGGCTTGATAAAGAACATTCATAAAATCTGTTCAAGTTTTGTATACTTGCGTATGCTAGATCTGAACAGTTGTGATGTTCATATATTGCCAGAATCATTGTGCGACTTAATATGTTTGAGATATCTTGACCTGTCTTACACACCTATATTAACGCTTCCTGATTACATTTCATGGAAACTCGTGTCTCTGCAGACTTTAAACCTACTTGGTTGCCCTAATCTGAAGCGTTTGCCAGACTTGGGAGGCATGACAGGCCTAAGACATCTTGATATAACTGCATGCAGAAGTTTGACTCAGATGCCTGAGGGTTTTGGAGAACTACATCAACTTGAGACATTGCCATTGTATGTTATTAGCTACGACGGCAAGGCCCTTGAGCTGGGTGGTTTGAATCTTTATGGTAAGTTGAATCTCACACACTTGGAAAATGTAACAAAGGCAGTAGAAGCGAAATCAGCAGGATTGAGGATGAAGGAGAATATCGAGTCATTGGGACTATATTGGAGAGGCGAAGATGTGGATGAGTCAATCATGGTAAAACCAACAAGAAGCAGTCATCTCAGGATCACAGAGAGTGCCACAGAATTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PUB UBA

Protein Analysis

739

Amino Acids

84.51

Weight (kDa)

6.29

Isoelectric Point (pI)

50.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 9 - 87 2.9e-16 Rx N-terminal domain
NB-ARC PF00931 157 - 330 1.1e-40 NB-ARC domain
WHD_DRP PF23559 416 - 486 9e-24 Disease resistance protein Winged helix domain
LRR_14 PF23598 533 - 733 1.3e-20 Leucine-rich repeat region
LRR_R13L1-DRL21 PF25019 669 - 715 1.8e-06 R13L1/DRL21 LRRs
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1608
Acc36I ACCTGC 2 cut(s) 705, 1608
AccI GTMKAC 1 cut(s) 1671
AciI CCGC 4 cut(s) 155, 322, 883, 897
AclWI GGATC 2 cut(s) 271, 2201
AcsI RAATTY 5 cut(s) 189, 919, 1265, 1527, 2213
AcuI CTGAAG 2 cut(s) 722, 1871
AfaI GTAC 2 cut(s) 1430, 1466
AfiI CCNNNNNNNGG 3 cut(s) 787, 1868, 2008
AflII CTTAAG 1 cut(s) 308
AflIII ACRYGT 1 cut(s) 81
AjnI CCWGG 1 cut(s) 519
Alw21I GWGCWC 1 cut(s) 1582
Alw26I GTCTC 8 cut(s) 113, 422, 652, 747, 1327, 1508, 1818, 1955
AlwI GGATC 2 cut(s) 271, 2201
AlwNI CAGNNNCTG 1 cut(s) 760
Ama87I CYCGRG 2 cut(s) 146, 206
AoxI GGCC 3 cut(s) 392, 1882, 1998
ApeKI GCWGC 3 cut(s) 215, 760, 1070
ApoI RAATTY 5 cut(s) 189, 919, 1265, 1527, 2213
ArsI GACNNNNNNTTYG 2 cut(s) 471, 503
Asp700I GAANNNNTTC 2 cut(s) 735, 1527
AspLEI GCGC 1 cut(s) 1098
AspS9I GGNCC 1 cut(s) 1999
AsuHPI GGTGA 2 cut(s) 1354, 1361
AvaI CYCGRG 2 cut(s) 146, 206
AxyI CCTNAGG 1 cut(s) 1932
BanII GRGCYC 1 cut(s) 1582
BauI CACGAG 3 cut(s) 782, 1575, 1808
BbsI GAAGAC 3 cut(s) 498, 686, 1326
Bbv12I GWGCWC 1 cut(s) 1582
BbvCI CCTCAGC 1 cut(s) 228
BbvI GCAGC 3 cut(s) 227, 747, 1082
BccI CCATC 3 cut(s) 851, 1291, 1403
BceAI ACGGC 1 cut(s) 2008
BciT130I CCWGG 1 cut(s) 521
BcoDI GTCTC 8 cut(s) 113, 422, 652, 747, 1327, 1508, 1818, 1955
BfaI CTAG 3 cut(s) 282, 432, 1685
BfmI CTRYAG 1 cut(s) 1817
BfrI CTTAAG 1 cut(s) 308
BfuAI ACCTGC 2 cut(s) 705, 1608
BglII AGATCT 1 cut(s) 1687
BisI GCNGC 3 cut(s) 216, 761, 1071
BlsI GCNGC 3 cut(s) 217, 762, 1072
Bme1390I CCNGG 1 cut(s) 521
BmeT110I CYCGRG 2 cut(s) 146, 206
BmgT120I GGNCC 1 cut(s) 1999
BmrFI CCNGG 1 cut(s) 521
BmrI ACTGGG 2 cut(s) 19, 829
BmuI ACTGGG 2 cut(s) 19, 829
BpiI GAAGAC 3 cut(s) 498, 686, 1326
BplI GAGNNNNNCTC 2 cut(s) 419, 451
BpmI CTGGAG 1 cut(s) 89
Bpu10I CCTNAGC 1 cut(s) 228
BpuEI CTTGAG 3 cut(s) 495, 1979, 2024
Bsa29I ATCGAT 1 cut(s) 1402
BsaBI GATNNNNATC 1 cut(s) 532
BsaI GGTCTC 3 cut(s) 113, 1327, 1508
Bsc4I CCNNNNNNNGG 3 cut(s) 787, 1868, 2008
Bse1I ACTGG 2 cut(s) 14, 824
Bse21I CCTNAGG 1 cut(s) 1932
Bse3DI GCAATG 1 cut(s) 1964
Bse8I GATNNNNATC 1 cut(s) 532
BseBI CCWGG 1 cut(s) 521
BseCI ATCGAT 1 cut(s) 1402
BseJI GATNNNNATC 1 cut(s) 532
BseLI CCNNNNNNNGG 3 cut(s) 787, 1868, 2008
BseMI GCAATG 1 cut(s) 1964
BseMII CTCAG 6 cut(s) 219, 735, 758, 1923, 1937, 2203
BseNI ACTGG 2 cut(s) 14, 824
BseRI GAGGAG 5 cut(s) 770, 962, 965, 1008, 1528
BseXI GCAGC 3 cut(s) 227, 747, 1082
BseYI CCCAGC 3 cut(s) 22, 960, 2008
BsgI GTGCAG 3 cut(s) 224, 733, 746
BshFI GGCC 3 cut(s) 394, 1884, 2000
BshVI ATCGAT 1 cut(s) 1402
BsiHKAI GWGCWC 1 cut(s) 1582
BsiHKCI CYCGRG 2 cut(s) 146, 206
BslFI GGGAC 3 cut(s) 381, 836, 2136
BslI CCNNNNNNNGG 3 cut(s) 787, 1868, 2008
BsmAI GTCTC 8 cut(s) 113, 422, 652, 747, 1327, 1508, 1818, 1955
BsmFI GGGAC 3 cut(s) 381, 836, 2136
BsnI GGCC 3 cut(s) 394, 1884, 2000
Bso31I GGTCTC 3 cut(s) 113, 1327, 1508
BsoBI CYCGRG 2 cut(s) 146, 206
Bsp1286I GDGCHC 1 cut(s) 1582
Bsp143I GATC 9 cut(s) 36, 276, 304, 406, 413, 672, 1399, 1687, 2193
BspACI CCGC 4 cut(s) 155, 322, 883, 897
BspANI GGCC 3 cut(s) 394, 1884, 2000
BspCNI CTCAG 6 cut(s) 220, 734, 757, 1924, 1936, 2202
BspDI ATCGAT 1 cut(s) 1402
BspHI TCATGA 3 cut(s) 675, 903, 1450
BspMAI CTGCAG 1 cut(s) 1821
BspMI ACCTGC 2 cut(s) 705, 1608
BspPI GGATC 2 cut(s) 271, 2201
BspQI GCTCTTC 1 cut(s) 153
BspTI CTTAAG 1 cut(s) 308
BspTNI GGTCTC 3 cut(s) 113, 1327, 1508
BsrDI GCAATG 1 cut(s) 1964
BsrI ACTGG 2 cut(s) 14, 824
BssMI GATC 9 cut(s) 36, 276, 304, 406, 413, 672, 1399, 1687, 2193
BssNAI GTATAC 1 cut(s) 1672
BssSI CACGAG 3 cut(s) 782, 1575, 1808
Bst1107I GTATAC 1 cut(s) 1672
Bst2BI CACGAG 3 cut(s) 782, 1575, 1808
Bst2UI CCWGG 1 cut(s) 521
Bst4CI ACNGT 6 cut(s) 358, 498, 1119, 1325, 1464, 1697
Bst6I CTCTTC 3 cut(s) 153, 460, 996
BstAFI CTTAAG 1 cut(s) 308
BstAPI GCANNNNNTGC 1 cut(s) 760
BstC8I GCNNGC 1 cut(s) 1909
BstHHI GCGC 1 cut(s) 1098
BstKTI GATC 9 cut(s) 39, 279, 307, 409, 416, 675, 1402, 1690, 2196
BstMAI GTCTC 8 cut(s) 113, 422, 652, 747, 1327, 1508, 1818, 1955
BstMBI GATC 9 cut(s) 36, 276, 304, 406, 413, 672, 1399, 1687, 2193
BstMWI GCNNNNNNNGC 7 cut(s) 224, 590, 760, 1881, 1992, 2075, 2084
BstNI CCWGG 1 cut(s) 521
BstNSI RCATGY 2 cut(s) 85, 1911
BstSCI CCNGG 1 cut(s) 519
BstSFI CTRYAG 1 cut(s) 1817
BstV1I GCAGC 3 cut(s) 227, 747, 1082
BstV2I GAAGAC 3 cut(s) 498, 686, 1326
BstX2I RGATCY 1 cut(s) 1687
BstYI RGATCY 1 cut(s) 1687
BstZ17I GTATAC 1 cut(s) 1672
Bsu15I ATCGAT 1 cut(s) 1402
Bsu36I CCTNAGG 1 cut(s) 1932
BsuRI GGCC 3 cut(s) 394, 1884, 2000
BsuTUI ATCGAT 1 cut(s) 1402
BtsIMutI CAGTG 1 cut(s) 1124
BveI ACCTGC 2 cut(s) 705, 1608
Cac8I GCNNGC 1 cut(s) 1909
CaiI CAGNNNCTG 1 cut(s) 760
CciI TCATGA 3 cut(s) 675, 903, 1450
CfoI GCGC 1 cut(s) 1098
Cfr13I GGNCC 1 cut(s) 1999
ClaI ATCGAT 1 cut(s) 1402
Csp6I GTAC 2 cut(s) 1429, 1465
CspCI CAANNNNNGTGG 4 cut(s) 1002, 1037, 1100, 1135
CviAII CATG 9 cut(s) 82, 676, 904, 1451, 1486, 1800, 1876, 1908, 2161
CviQI GTAC 2 cut(s) 1429, 1465
DpnI GATC 9 cut(s) 38, 278, 306, 408, 415, 674, 1401, 1689, 2195
DpnII GATC 9 cut(s) 36, 276, 304, 406, 413, 672, 1399, 1687, 2193
DraI TTTAAA 1 cut(s) 1827
Eam1104I CTCTTC 3 cut(s) 153, 460, 996
EarI CTCTTC 3 cut(s) 153, 460, 996
Ecl136II GAGCTC 1 cut(s) 1580
Eco147I AGGCCT 2 cut(s) 394, 1884
Eco24I GRGCYC 1 cut(s) 1582
Eco31I GGTCTC 3 cut(s) 113, 1327, 1508
Eco32I GATATC 1 cut(s) 1751
Eco53kI GAGCTC 1 cut(s) 1580
Eco57I CTGAAG 2 cut(s) 722, 1871
Eco81I CCTNAGG 1 cut(s) 1932
Eco88I CYCGRG 2 cut(s) 146, 206
EcoICRI GAGCTC 1 cut(s) 1580
EcoO109I RGGNCCY 1 cut(s) 1999
EcoRI GAATTC 2 cut(s) 1265, 2213
EcoRII CCWGG 1 cut(s) 519
EcoRV GATATC 1 cut(s) 1751
EcoT22I ATGCAT 1 cut(s) 535
EcoT38I GRGCYC 1 cut(s) 1582
FaeI CATG 9 cut(s) 85, 679, 907, 1454, 1489, 1803, 1879, 1911, 2164
FalI AAGNNNNNCTT 4 cut(s) 321, 353, 1161, 1193
FaqI GGGAC 3 cut(s) 381, 836, 2136
FatI CATG 9 cut(s) 81, 675, 903, 1450, 1485, 1799, 1875, 1907, 2160
FauI CCCGC 2 cut(s) 329, 890
FblI GTMKAC 1 cut(s) 1671
Fnu4HI GCNGC 3 cut(s) 216, 761, 1071
FriOI GRGCYC 1 cut(s) 1582
Fsp4HI GCNGC 3 cut(s) 216, 761, 1071
FspBI CTAG 3 cut(s) 282, 432, 1685
GlaI GCGC 1 cut(s) 1097
GluI GCNGC 3 cut(s) 216, 761, 1071
GsaI CCCAGC 3 cut(s) 26, 964, 2012
GsuI CTGGAG 1 cut(s) 89
HaeIII GGCC 3 cut(s) 394, 1884, 2000
HhaI GCGC 1 cut(s) 1098
Hin1II CATG 9 cut(s) 85, 679, 907, 1454, 1489, 1803, 1879, 1911, 2164
Hin6I GCGC 1 cut(s) 1096
HinP1I GCGC 1 cut(s) 1096
HindIII AAGCTT 1 cut(s) 513
HphI GGTGA 2 cut(s) 1354, 1361
Hpy166II GTNNAC 3 cut(s) 361, 381, 1672
Hpy188I TCNGA 7 cut(s) 652, 724, 1046, 1692, 1851, 1926, 2219
Hpy8I GTNNAC 3 cut(s) 361, 381, 1672
Hpy99I CGWCG 2 cut(s) 414, 1994
HpyAV CCTTC 6 cut(s) 205, 518, 697, 931, 1298, 2095
HpyCH4III ACNGT 6 cut(s) 358, 498, 1119, 1325, 1464, 1697
HpyCH4IV ACGT 1 cut(s) 1467
HpyF10VI GCNNNNNNNGC 7 cut(s) 224, 590, 760, 1881, 1992, 2075, 2084
HpySE526I ACGT 1 cut(s) 1467
Hsp92II CATG 9 cut(s) 85, 679, 907, 1454, 1489, 1803, 1879, 1911, 2164
HspAI GCGC 1 cut(s) 1096
Kzo9I GATC 9 cut(s) 36, 276, 304, 406, 413, 672, 1399, 1687, 2193
LguI GCTCTTC 1 cut(s) 153
Lsp1109I GCAGC 3 cut(s) 227, 747, 1082
MaeI CTAG 3 cut(s) 282, 432, 1685
MaeII ACGT 1 cut(s) 1467
MaeIII GTNAC 5 cut(s) 450, 697, 874, 1196, 2059
MalI GATC 9 cut(s) 38, 278, 306, 408, 415, 674, 1401, 1689, 2195
MboI GATC 9 cut(s) 36, 276, 304, 406, 413, 672, 1399, 1687, 2193
MfeI CAATTG 1 cut(s) 1026
MflI RGATCY 1 cut(s) 1687
MhlI GDGCHC 1 cut(s) 1582
MlyI GAGTC 5 cut(s) 701, 905, 1915, 2123, 2162
MmeI TCCRAC 3 cut(s) 198, 768, 1531
Mph1103I ATGCAT 1 cut(s) 535
MroXI GAANNNNTTC 2 cut(s) 735, 1527
MseI TTAA 7 cut(s) 309, 327, 375, 1283, 1736, 1778, 1826
MslI CAYNNNNRTG 2 cut(s) 813, 1484
MspCI CTTAAG 1 cut(s) 308
MspR9I CCNGG 1 cut(s) 521
MunI CAATTG 1 cut(s) 1026
MvaI CCWGG 1 cut(s) 521
MwoI GCNNNNNNNGC 7 cut(s) 224, 590, 760, 1881, 1992, 2075, 2084
NdeII GATC 9 cut(s) 36, 276, 304, 406, 413, 672, 1399, 1687, 2193
NlaIII CATG 9 cut(s) 85, 679, 907, 1454, 1489, 1803, 1879, 1911, 2164
NmuCI GTSAC 1 cut(s) 450
NsiI ATGCAT 1 cut(s) 535
NspI RCATGY 2 cut(s) 85, 1911
PaeI GCATGC 1 cut(s) 1911
PaeR7I CTCGAG 2 cut(s) 146, 206
PagI TCATGA 3 cut(s) 675, 903, 1450
PaqCI CACCTGC 1 cut(s) 1608
PceI AGGCCT 2 cut(s) 394, 1884
PciI ACATGT 1 cut(s) 81
PciSI GCTCTTC 1 cut(s) 153
PdmI GAANNNNTTC 2 cut(s) 735, 1527
PfeI GAWTC 6 cut(s) 133, 317, 1625, 1721, 2020, 2038
PflFI GACNNNGTC 1 cut(s) 11
PkrI GCNGC 3 cut(s) 217, 762, 1072
PleI GAGTC 5 cut(s) 700, 905, 1915, 2122, 2161
PpsI GAGTC 5 cut(s) 700, 905, 1915, 2122, 2161
PscI ACATGT 1 cut(s) 81
Psp124BI GAGCTC 1 cut(s) 1582
Psp6I CCWGG 1 cut(s) 519
PspFI CCCAGC 3 cut(s) 22, 960, 2008
PspGI CCWGG 1 cut(s) 519
PspPI GGNCC 1 cut(s) 1999
PstI CTGCAG 1 cut(s) 1821
PstNI CAGNNNCTG 1 cut(s) 760
PsuI RGATCY 1 cut(s) 1687
PsyI GACNNNGTC 1 cut(s) 11
RsaI GTAC 2 cut(s) 1430, 1466
RsaNI GTAC 2 cut(s) 1429, 1465
RseI CAYNNNNRTG 2 cut(s) 813, 1484
SacI GAGCTC 1 cut(s) 1582
SapI GCTCTTC 1 cut(s) 153
SaqAI TTAA 7 cut(s) 309, 327, 375, 1283, 1736, 1778, 1826
SatI GCNGC 3 cut(s) 216, 761, 1071
Sau3AI GATC 9 cut(s) 36, 276, 304, 406, 413, 672, 1399, 1687, 2193
Sau96I GGNCC 1 cut(s) 1999
SchI GAGTC 5 cut(s) 701, 905, 1915, 2123, 2162
ScrFI CCNGG 1 cut(s) 521
SduI GDGCHC 1 cut(s) 1582
SfcI CTRYAG 1 cut(s) 1817
Sfr274I CTCGAG 2 cut(s) 146, 206
SlaI CTCGAG 2 cut(s) 146, 206
SmiMI CAYNNNNRTG 2 cut(s) 813, 1484
SmlI CTYRAG 6 cut(s) 146, 206, 308, 510, 1958, 2003
SmoI CTYRAG 6 cut(s) 146, 206, 308, 510, 1958, 2003
SphI GCATGC 1 cut(s) 1911
SseBI AGGCCT 2 cut(s) 394, 1884
SsiI CCGC 4 cut(s) 155, 322, 883, 897
SspI AATATT 1 cut(s) 1248
SspMI CTAG 3 cut(s) 282, 432, 1685
SstI GAGCTC 1 cut(s) 1582
StuI AGGCCT 2 cut(s) 394, 1884
StyD4I CCNGG 1 cut(s) 519
TaaI ACNGT 6 cut(s) 358, 498, 1119, 1325, 1464, 1697
TaiI ACGT 1 cut(s) 1470
TaqI TCGA 7 cut(s) 147, 207, 412, 624, 690, 1402, 2112
TfiI GAWTC 6 cut(s) 133, 317, 1625, 1721, 2020, 2038
Tru1I TTAA 7 cut(s) 309, 327, 375, 1283, 1736, 1778, 1826
Tru9I TTAA 7 cut(s) 309, 327, 375, 1283, 1736, 1778, 1826
TscAI CASTG 1 cut(s) 1124
TseFI GTSAC 1 cut(s) 450
TseI GCWGC 3 cut(s) 215, 760, 1070
Tsp45I GTSAC 1 cut(s) 450
TspGWI ACGGA 2 cut(s) 249, 409
TspRI CASTG 1 cut(s) 1124
Tth111I GACNNNGTC 1 cut(s) 11
Vha464I CTTAAG 1 cut(s) 308
XapI RAATTY 5 cut(s) 189, 919, 1265, 1527, 2213
XceI RCATGY 2 cut(s) 85, 1911
XhoI CTCGAG 2 cut(s) 146, 206
XmiI GTMKAC 1 cut(s) 1671
XmnI GAANNNNTTC 2 cut(s) 735, 1527
XspI CTAG 3 cut(s) 282, 432, 1685
Zsp2I ATGCAT 1 cut(s) 535
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.