Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0004919

Physical Location & Seq

Genomic Coordinates Forward (+)

46391594 .. 46394893

Gene Structure 3300 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G023740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGCTTCAATGGCAGGGCTTCTCTGAACCCCCTTCATTTAAACCTCACCATCCCCCTCTGACAGGGATGGCTGTTCCTCGAGTAAACAAGAAATTGCTTCAAGAGCTTGAATCAATGGGATTTCCCACAGCTCGGGCAACTCGGGCTCTTCATTATTCAGGTACTGCTAGCTTAGAGGCTTGTATAGACTGGATCGTTGATCACGAGAATGACCCGGACATTGATCAGATGCCCTTGGTAACAGTAGACATTGATATTGAATCTCCAGAGACATTCCATATCACCCAGGCAATGAAAATAAAAGCACAAGAGTTAAGGGATCAAACACGCAAGAAGAGTAAAGAAGAAGAAAAGAAACTGGAATTACAAATGGAACGAGAAAGAGAGAAGGAGAGGATTCGATCTGGTAAGGAACTCATGGAAGCAAAGCAAATCTTAGAAGACAATGAAAGAAAACGTAATATAGTGTTTCGGAATTCTGAGAAAGAGGAAGAGAAACGAGCAAGAGAGAGAATTCGCTGGAAACTAGAACAAGATAAGTTAGAAAGAAGAGTTAAGCTTGGATTGCCACCAGGACACACAGCATCTACGAAACTTTCTATACCTGTGAGGGGGGAAATCCAGAAATCATTGCCCGTCCAATCTGTTGCAAAGTCAGAACATATAAGAGAGTGTTTAAGGTCTCTGAGGCGCAACCACAAGGATGATGATGCTAGAGTACGACAAGCCTTCCAAACTCTGCTGATTTATGTTGGAAATGTTGCAAAGAATCCCGATCAAGAAAAATTCCGGAAGATTAGACTCGGTAATCCATCATTCTTGGATAGAGTTGGAAGTTTGATTGGAGGAATAGAGTTTCTTGAGCTCTGTGGGTTTGAGAGAACTGAAGCGGGAGAGTTCTTGTATCTTCCTCGTGATAAGGTTGACATGGCCACATTATACTCCGCTGCTTCTGAACTGAAGTCTGCATTGACAAACCCTTTCTTTGGCCTTCTGTCTAGAGATGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PUB UBA

Protein Analysis

336

Amino Acids

38.85

Weight (kDa)

8.79

Isoelectric Point (pI)

54.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UBA_7	PF22562	29 - 76	1.9e-16	UBA-like domain
PUB	PF09409	239 - 309	1.9e-20	PUB domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004919)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48690 AT5G48690 AT5G48690
fragaria_vesca	FvH4_2g18750 FvH4_2g18750
malus_domestica	MD05G1173000.v1.1
prunus_persica	Prupe.8G200600_v2.0.a1 Prupe.8G200600_v2.0.a1 Prupe.8G200600_v2.0.a1 Prupe.8G200600_v2.0.a1 Prupe.8G200600_v2.0.a1
pyrus_communis	pycom05g15970
rosa_chinensis	RchiOBHm_Chr6g0284421 RchiOBHm_Chr6g0284441
rosa_laevigata	RLG00000012745
rosa_multiflora	Rmu_sc0005959.1_g000001 Rmu_sc0032923.1_g000001
rosa_roxburghii	Rroxscaffold_7G00184710
rosa_rugosa	Rorug06G0163100 Rorug06G0163200 Rorug06G0163300 Rorug06G0163400 Rorug06G0163500 Rorug06G0163600 Rorug06G0163700
rosa_samantha	Rh6AG275900 Rh6BG276300 Rh6CG278300 Rh6CG278400
rosa_wichuraiana	Rw6G023740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	246
AccIII	TCCGGA	1 cut(s)	789
AciI	CCGC	2 cut(s)	890, 945
AclWI	GGATC	2 cut(s)	200, 327
AcoI	YGGCCR	1 cut(s)	930
AcsI	RAATTY	3 cut(s)	475, 513, 785
AcuI	CTGAAG	2 cut(s)	906, 980
AfaI	GTAC	2 cut(s)	163, 720
AfiI	CCNNNNNNNGG	4 cut(s)	62, 132, 611, 986
AgsI	TTSAA	4 cut(s)	8, 101, 110, 260
AjnI	CCWGG	2 cut(s)	285, 571
AluBI	AGCT	5 cut(s)	106, 131, 171, 559, 865
AluI	AGCT	5 cut(s)	106, 131, 171, 559, 865
Alw21I	GWGCWC	1 cut(s)	867
Alw26I	GTCTC	2 cut(s)	263, 687
AlwI	GGATC	2 cut(s)	200, 327
AlwNI	CAGNNNCTG	1 cut(s)	164
Ama87I	CYCGRG	3 cut(s)	78, 132, 141
Aor13HI	TCCGGA	1 cut(s)	789
AoxI	GGCC	2 cut(s)	930, 988
ApeKI	GCWGC	1 cut(s)	947
ApoI	RAATTY	3 cut(s)	475, 513, 785
AspLEI	GCGC	1 cut(s)	693
AsuC2I	CCSGG	1 cut(s)	215
AsuHPI	GGTGA	2 cut(s)	38, 274
AsuNHI	GCTAGC	1 cut(s)	167
AvaI	CYCGRG	3 cut(s)	78, 132, 141
BalI	TGGCCA	1 cut(s)	932
BanII	GRGCYC	2 cut(s)	148, 867
BauI	CACGAG	2 cut(s)	203, 912
BbsI	GAAGAC	1 cut(s)	447
Bbv12I	GWGCWC	1 cut(s)	867
BbvI	GCAGC	1 cut(s)	934
BccI	CCATC	3 cut(s)	57, 61, 820
BciT130I	CCWGG	2 cut(s)	287, 573
BclI	TGATCA	2 cut(s)	199, 223
BcnI	CCSGG	1 cut(s)	215
BcoDI	GTCTC	2 cut(s)	263, 687
BfaI	CTAG	4 cut(s)	168, 527, 714, 999
BisI	GCNGC	1 cut(s)	948
BlsI	GCNGC	1 cut(s)	949
Bme1390I	CCNGG	3 cut(s)	215, 287, 573
BmeT110I	CYCGRG	3 cut(s)	78, 132, 141
BmrFI	CCNGG	3 cut(s)	215, 287, 573
BmsI	GCATC	3 cut(s)	219, 593, 700
BmtI	GCTAGC	1 cut(s)	171
BpiI	GAAGAC	1 cut(s)	447
BpmI	CTGGAG	1 cut(s)	249
BpuEI	CTTGAG	1 cut(s)	881
BpuMI	CCSGG	1 cut(s)	215
BsaI	GGTCTC	1 cut(s)	687
BsaJI	CCNNGG	2 cut(s)	234, 285
BsaWI	WCCGGW	1 cut(s)	789
Bsc4I	CCNNNNNNNGG	4 cut(s)	62, 132, 611, 986
Bse1I	ACTGG	2 cut(s)	194, 363
Bse3DI	GCAATG	2 cut(s)	297, 629
BseAI	TCCGGA	1 cut(s)	789
BseBI	CCWGG	2 cut(s)	287, 573
BseDI	CCNNGG	2 cut(s)	234, 285
BseGI	GGATG	3 cut(s)	49, 72, 709
BseLI	CCNNNNNNNGG	4 cut(s)	62, 132, 611, 986
BseMI	GCAATG	2 cut(s)	297, 629
BseMII	CTCAG	2 cut(s)	471, 677
BseNI	ACTGG	2 cut(s)	194, 363
BseXI	GCAGC	1 cut(s)	934
BshFI	GGCC	2 cut(s)	932, 990
BsiHKAI	GWGCWC	1 cut(s)	867
BsiHKCI	CYCGRG	3 cut(s)	78, 132, 141
BsiSI	CCGG	2 cut(s)	215, 790
BslI	CCNNNNNNNGG	4 cut(s)	62, 132, 611, 986
BsmAI	GTCTC	2 cut(s)	263, 687
BsnI	GGCC	2 cut(s)	932, 990
Bso31I	GGTCTC	1 cut(s)	687
BsoBI	CYCGRG	3 cut(s)	78, 132, 141
Bsp1286I	GDGCHC	2 cut(s)	148, 867
Bsp13I	TCCGGA	1 cut(s)	789
Bsp143I	GATC	6 cut(s)	192, 199, 223, 319, 401, 775
BspACI	CCGC	2 cut(s)	890, 945
BspANI	GGCC	2 cut(s)	932, 990
BspCNI	CTCAG	2 cut(s)	472, 678
BspEI	TCCGGA	1 cut(s)	789
BspOI	GCTAGC	1 cut(s)	171
BspPI	GGATC	2 cut(s)	200, 327
BspQI	GCTCTTC	1 cut(s)	153
BspTNI	GGTCTC	1 cut(s)	687
BsrDI	GCAATG	2 cut(s)	297, 629
BsrI	ACTGG	2 cut(s)	194, 363
BssECI	CCNNGG	2 cut(s)	234, 285
BssMI	GATC	6 cut(s)	192, 199, 223, 319, 401, 775
BssSI	CACGAG	2 cut(s)	203, 912
BssT1I	CCWWGG	1 cut(s)	234
Bst2BI	CACGAG	2 cut(s)	203, 912
Bst2UI	CCWGG	2 cut(s)	287, 573
Bst4CI	ACNGT	1 cut(s)	244
Bst6I	CTCTTC	4 cut(s)	153, 329, 486, 544
BstC8I	GCNNGC	1 cut(s)	169
BstDEI	CTNAG	4 cut(s)	172, 436, 480, 686
BstENI	CCTNNNNNAGG	1 cut(s)	60
BstF5I	GGATG	3 cut(s)	49, 72, 709
BstHHI	GCGC	1 cut(s)	693
BstKTI	GATC	6 cut(s)	195, 202, 226, 322, 404, 778
BstMAI	GTCTC	2 cut(s)	263, 687
BstMBI	GATC	6 cut(s)	192, 199, 223, 319, 401, 775
BstMWI	GCNNNNNNNGC	4 cut(s)	10, 103, 143, 565
BstNI	CCWGG	2 cut(s)	287, 573
BstSCI	CCNGG	3 cut(s)	213, 285, 571
BstV1I	GCAGC	1 cut(s)	934
BstV2I	GAAGAC	1 cut(s)	447
BsuRI	GGCC	2 cut(s)	932, 990
BtsCI	GGATG	3 cut(s)	49, 72, 709
Cac8I	GCNNGC	1 cut(s)	169
CaiI	CAGNNNCTG	1 cut(s)	164
CfoI	GCGC	1 cut(s)	693
Csp6I	GTAC	2 cut(s)	162, 719
CviAII	CATG	2 cut(s)	418, 928
CviQI	GTAC	2 cut(s)	162, 719
DdeI	CTNAG	4 cut(s)	172, 436, 480, 686
DpnI	GATC	6 cut(s)	194, 201, 225, 321, 403, 777
DpnII	GATC	6 cut(s)	192, 199, 223, 319, 401, 775
DraI	TTTAAA	1 cut(s)	40
EaeI	YGGCCR	1 cut(s)	930
Eam1104I	CTCTTC	4 cut(s)	153, 329, 486, 544
EarI	CTCTTC	4 cut(s)	153, 329, 486, 544
Ecl136II	GAGCTC	1 cut(s)	865
Eco130I	CCWWGG	1 cut(s)	234
Eco24I	GRGCYC	2 cut(s)	148, 867
Eco31I	GGTCTC	1 cut(s)	687
Eco53kI	GAGCTC	1 cut(s)	865
Eco57I	CTGAAG	2 cut(s)	906, 980
Eco88I	CYCGRG	3 cut(s)	78, 132, 141
EcoICRI	GAGCTC	1 cut(s)	865
EcoNI	CCTNNNNNAGG	1 cut(s)	60
EcoRI	GAATTC	2 cut(s)	475, 513
EcoRII	CCWGG	2 cut(s)	285, 571
EcoT14I	CCWWGG	1 cut(s)	234
EcoT38I	GRGCYC	2 cut(s)	148, 867
ErhI	CCWWGG	1 cut(s)	234
FaeI	CATG	2 cut(s)	421, 931
FalI	AAGNNNNNCTT	2 cut(s)	419, 451
FatI	CATG	2 cut(s)	417, 927
FauI	CCCGC	1 cut(s)	883
FbaI	TGATCA	2 cut(s)	199, 223
FblI	GTMKAC	1 cut(s)	246
Fnu4HI	GCNGC	1 cut(s)	948
FokI	GGATG	3 cut(s)	36, 79, 716
FriOI	GRGCYC	2 cut(s)	148, 867
Fsp4HI	GCNGC	1 cut(s)	948
FspBI	CTAG	4 cut(s)	168, 527, 714, 999
GlaI	GCGC	1 cut(s)	692
GluI	GCNGC	1 cut(s)	948
GsuI	CTGGAG	1 cut(s)	249
HaeIII	GGCC	2 cut(s)	932, 990
HapII	CCGG	2 cut(s)	215, 790
HhaI	GCGC	1 cut(s)	693
Hin1II	CATG	2 cut(s)	421, 931
Hin6I	GCGC	1 cut(s)	691
HinP1I	GCGC	1 cut(s)	691
HincII	GTYRAC	1 cut(s)	925
HindII	GTYRAC	1 cut(s)	925
HindIII	AAGCTT	1 cut(s)	557
HinfI	GANTC	5 cut(s)	110, 260, 397, 769, 801
HpaII	CCGG	2 cut(s)	215, 790
HphI	GGTGA	2 cut(s)	38, 274
Hpy166II	GTNNAC	3 cut(s)	85, 247, 925
Hpy188I	TCNGA	8 cut(s)	25, 60, 228, 474, 481, 658, 687, 955
Hpy8I	GTNNAC	3 cut(s)	85, 247, 925
HpyAV	CCTTC	4 cut(s)	42, 382, 739, 1001
HpyCH4III	ACNGT	1 cut(s)	244
HpyCH4IV	ACGT	1 cut(s)	457
HpyCH4V	TGCA	3 cut(s)	650, 764, 968
HpyF10VI	GCNNNNNNNGC	4 cut(s)	10, 103, 143, 565
HpyF3I	CTNAG	4 cut(s)	172, 436, 480, 686
HpySE526I	ACGT	1 cut(s)	457
Hsp92II	CATG	2 cut(s)	421, 931
HspAI	GCGC	1 cut(s)	691
Kpn2I	TCCGGA	1 cut(s)	789
Ksp22I	TGATCA	2 cut(s)	199, 223
Kzo9I	GATC	6 cut(s)	192, 199, 223, 319, 401, 775
LguI	GCTCTTC	1 cut(s)	153
Lsp1109I	GCAGC	1 cut(s)	934
LweI	GCATC	3 cut(s)	219, 593, 700
MaeI	CTAG	4 cut(s)	168, 527, 714, 999
MaeII	ACGT	1 cut(s)	457
MaeIII	GTNAC	1 cut(s)	238
MalI	GATC	6 cut(s)	194, 201, 225, 321, 403, 777
MboI	GATC	6 cut(s)	192, 199, 223, 319, 401, 775
MboII	GAAGA	9 cut(s)	140, 346, 356, 359, 452, 503, 561, 805, 899
MhlI	GDGCHC	2 cut(s)	148, 867
MlsI	TGGCCA	1 cut(s)	932
MluCI	AATT	5 cut(s)	92, 362, 475, 513, 785
MluNI	TGGCCA	1 cut(s)	932
MlyI	GAGTC	1 cut(s)	795
MmeI	TCCRAC	2 cut(s)	733, 811
Mox20I	TGGCCA	1 cut(s)	932
MroI	TCCGGA	1 cut(s)	789
MscI	TGGCCA	1 cut(s)	932
MseI	TTAA	4 cut(s)	39, 314, 555, 677
MslI	CAYNNNNRTG	2 cut(s)	207, 702
Msp20I	TGGCCA	1 cut(s)	932
MspA1I	CMGCKG	1 cut(s)	947
MspI	CCGG	2 cut(s)	215, 790
MspR9I	CCNGG	3 cut(s)	215, 287, 573
MvaI	CCWGG	2 cut(s)	287, 573
MwoI	GCNNNNNNNGC	4 cut(s)	10, 103, 143, 565
NciI	CCSGG	1 cut(s)	215
NdeII	GATC	6 cut(s)	192, 199, 223, 319, 401, 775
NheI	GCTAGC	1 cut(s)	167
NlaIII	CATG	2 cut(s)	421, 931
PaeR7I	CTCGAG	1 cut(s)	78
PciSI	GCTCTTC	1 cut(s)	153
PcsI	WCGNNNNNNNCGW	1 cut(s)	201
PfeI	GAWTC	4 cut(s)	110, 260, 397, 769
PkrI	GCNGC	1 cut(s)	949
PleI	GAGTC	1 cut(s)	795
PpsI	GAGTC	1 cut(s)	795
Psp124BI	GAGCTC	1 cut(s)	867
Psp6I	CCWGG	2 cut(s)	285, 571
PspGI	CCWGG	2 cut(s)	285, 571
PspXI	VCTCGAGB	1 cut(s)	78
PstNI	CAGNNNCTG	1 cut(s)	164
RsaI	GTAC	2 cut(s)	163, 720
RsaNI	GTAC	2 cut(s)	162, 719
RseI	CAYNNNNRTG	2 cut(s)	207, 702
SacI	GAGCTC	1 cut(s)	867
SapI	GCTCTTC	1 cut(s)	153
SaqAI	TTAA	4 cut(s)	39, 314, 555, 677
SatI	GCNGC	1 cut(s)	948
Sau3AI	GATC	6 cut(s)	192, 199, 223, 319, 401, 775
SchI	GAGTC	1 cut(s)	795
ScrFI	CCNGG	3 cut(s)	215, 287, 573
SduI	GDGCHC	2 cut(s)	148, 867
SfaNI	GCATC	3 cut(s)	219, 593, 700
Sfr274I	CTCGAG	1 cut(s)	78
SlaI	CTCGAG	1 cut(s)	78
SmiMI	CAYNNNNRTG	2 cut(s)	207, 702
SmlI	CTYRAG	2 cut(s)	78, 860
SmoI	CTYRAG	2 cut(s)	78, 860
Sse9I	AATT	5 cut(s)	92, 362, 475, 513, 785
SsiI	CCGC	2 cut(s)	890, 945
SspMI	CTAG	4 cut(s)	168, 527, 714, 999
SstI	GAGCTC	1 cut(s)	867
StyD4I	CCNGG	3 cut(s)	213, 285, 571
StyI	CCWWGG	1 cut(s)	234
TaaI	ACNGT	1 cut(s)	244
TaiI	ACGT	1 cut(s)	460
TaqI	TCGA	2 cut(s)	79, 400
TasI	AATT	5 cut(s)	92, 362, 475, 513, 785
TfiI	GAWTC	4 cut(s)	110, 260, 397, 769
Tru1I	TTAA	4 cut(s)	39, 314, 555, 677
Tru9I	TTAA	4 cut(s)	39, 314, 555, 677
TseI	GCWGC	1 cut(s)	947
TspDTI	ATGAA	4 cut(s)	24, 140, 308, 462
XagI	CCTNNNNNAGG	1 cut(s)	60
XapI	RAATTY	3 cut(s)	475, 513, 785
XbaI	TCTAGA	1 cut(s)	998
XhoI	CTCGAG	1 cut(s)	78
XmiI	GTMKAC	1 cut(s)	246
XspI	CTAG	4 cut(s)	168, 527, 714, 999

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.