Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0004919

Physical Location & Seq

Genomic Coordinates Reverse (-)

24012196 .. 24015722

Gene Structure 3527 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00184710.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGCTTCAATGGCCCCCTTCATTTAAACCTCACCATCCCCCTTTGGCCTCCAGTTGGCCAAAACTGCAAACCTTGCTGACGACCCAAATACAGACAGGGATGGCTGTTCCTCGAGTAAACAAGAAATTGCTTCAAGAGCTTGAATCAATGGGATTTCCCACAGCTCGGGCAACTCGGGCTCTTCATTATTCAGGTATTGCTAGCTTAGAGGCTTGTATAGACTGGATCATTGATCACGAGAATGACCCGGACATTGATCAGATGCCCTTGGTAACAGTAGACATTGATATTGAATCTCCAGAGCCATGCCATATCACCGAGGCAATGAAAATAAAAGCACAAGAGTTAAGGGATCAAACACGCAAGAAGAGTAAAGAAGAAGAAAAGAAACTGGAATTACAAATGGAACGAGAAAGAGAGAAGGAGAGGATTCGATCTGGTAAGGAACTCATGGAAGCAAAGCAAATCTTAGAAGACAATGAAAGAAAACGTAATATAGTGTTTCGGAATTCTGAGAAAGAGGAAGAGAAACGAGCAAGAGAGAGAATTCGCTGGAAACTAGAACAAGATAAGTTAGAAAGAAGAGTTAAGCTTGGATTGCCACCAGGACACACAGCATCTGCGGAACTTTCTATACCTGTGAGGGGGAAATCCCAGAAATCATTGCCTGTCCAATCTGTTGCAAAGTCAGAACATATAAGAGAGTGTTTAAGGTCTCTGAGGCGCAACCACAAGGATGATGATGCTAGAGTACGACGAGCCTTCCAAACTCTGCTGATTTATGTTGGAAATGTTGCAAAGAATCCCGATCAAGAAAAATTCAGGAAGATTAGACTCGGTAATCTGTCATTCTTGGATAGAGTTGGAAGTTTGATTGGAGGAATAGAGTTTCTTGAGCTCTGTGGGTTTGAGAGAACTGAAGCAGGAGAGTTCTTGTATCTTCCTCGTGATAAGGTTGACATGGCCACATTATACTCCGCTGCTTCTGAACTGAAGTCTGCATTGACAAACCCTTTCTTTGGCCTTCTGTCTAGAGATGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PUB UBA

Protein Analysis

347

Amino Acids

40.07

Weight (kDa)

9.0

Isoelectric Point (pI)

56.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UBA_7	PF22562	40 - 87	5.9e-16	UBA-like domain
PUB	PF09409	250 - 320	3.4e-19	PUB domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004919)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48690 AT5G48690 AT5G48690
fragaria_vesca	FvH4_2g18750 FvH4_2g18750
malus_domestica	MD05G1173000.v1.1
prunus_persica	Prupe.8G200600_v2.0.a1 Prupe.8G200600_v2.0.a1 Prupe.8G200600_v2.0.a1 Prupe.8G200600_v2.0.a1 Prupe.8G200600_v2.0.a1
pyrus_communis	pycom05g15970
rosa_chinensis	RchiOBHm_Chr6g0284421 RchiOBHm_Chr6g0284441
rosa_laevigata	RLG00000012745
rosa_multiflora	Rmu_sc0005959.1_g000001 Rmu_sc0032923.1_g000001
rosa_roxburghii	Rroxscaffold_7G00184710
rosa_rugosa	Rorug06G0163100 Rorug06G0163200 Rorug06G0163300 Rorug06G0163400 Rorug06G0163500 Rorug06G0163600 Rorug06G0163700
rosa_samantha	Rh6AG275900 Rh6BG276300 Rh6CG278300 Rh6CG278400
rosa_wichuraiana	Rw6G023740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	279
AciI	CCGC	2 cut(s)	623, 978
AclWI	GGATC	2 cut(s)	233, 360
AcoI	YGGCCR	2 cut(s)	56, 963
AcsI	RAATTY	3 cut(s)	508, 546, 818
AcuI	CTGAAG	2 cut(s)	939, 1013
AfaI	GTAC	1 cut(s)	753
AfiI	CCNNNNNNNGG	4 cut(s)	54, 165, 644, 1019
AgsI	TTSAA	4 cut(s)	8, 134, 143, 293
AjnI	CCWGG	1 cut(s)	604
AluBI	AGCT	5 cut(s)	139, 164, 204, 592, 898
AluI	AGCT	5 cut(s)	139, 164, 204, 592, 898
Alw21I	GWGCWC	1 cut(s)	900
Alw26I	GTCTC	1 cut(s)	720
AlwI	GGATC	2 cut(s)	233, 360
AlwNI	CAGNNNCTG	1 cut(s)	620
Ama87I	CYCGRG	3 cut(s)	111, 165, 174
AoxI	GGCC	5 cut(s)	11, 45, 56, 963, 1021
ApeKI	GCWGC	1 cut(s)	980
ApoI	RAATTY	3 cut(s)	508, 546, 818
AspLEI	GCGC	1 cut(s)	726
AspS9I	GGNCC	1 cut(s)	12
AsuC2I	CCSGG	1 cut(s)	248
AsuHPI	GGTGA	2 cut(s)	23, 307
AsuNHI	GCTAGC	1 cut(s)	200
AvaI	CYCGRG	3 cut(s)	111, 165, 174
BalI	TGGCCA	2 cut(s)	58, 965
BanII	GRGCYC	2 cut(s)	181, 900
BauI	CACGAG	2 cut(s)	236, 945
BbsI	GAAGAC	1 cut(s)	480
Bbv12I	GWGCWC	1 cut(s)	900
BbvI	GCAGC	1 cut(s)	967
BccI	CCATC	2 cut(s)	42, 94
BciT130I	CCWGG	1 cut(s)	606
BclI	TGATCA	2 cut(s)	232, 256
BcnI	CCSGG	1 cut(s)	248
BcoDI	GTCTC	1 cut(s)	720
BfaI	CTAG	4 cut(s)	201, 560, 747, 1032
BisI	GCNGC	1 cut(s)	981
BlsI	GCNGC	1 cut(s)	982
Bme1390I	CCNGG	2 cut(s)	248, 606
BmeT110I	CYCGRG	3 cut(s)	111, 165, 174
BmgT120I	GGNCC	1 cut(s)	12
BmiI	GGNNCC	1 cut(s)	14
BmrFI	CCNGG	2 cut(s)	248, 606
BmsI	GCATC	3 cut(s)	252, 626, 733
BmtI	GCTAGC	1 cut(s)	204
BpiI	GAAGAC	1 cut(s)	480
BpmI	CTGGAG	2 cut(s)	34, 282
BpuEI	CTTGAG	1 cut(s)	914
BpuMI	CCSGG	1 cut(s)	248
BsaI	GGTCTC	1 cut(s)	720
BsaJI	CCNNGG	2 cut(s)	267, 318
Bsc4I	CCNNNNNNNGG	4 cut(s)	54, 165, 644, 1019
Bse1I	ACTGG	3 cut(s)	51, 227, 396
Bse3DI	GCAATG	2 cut(s)	330, 662
BseBI	CCWGG	1 cut(s)	606
BseDI	CCNNGG	2 cut(s)	267, 318
BseGI	GGATG	3 cut(s)	34, 105, 742
BseLI	CCNNNNNNNGG	4 cut(s)	54, 165, 644, 1019
BseMI	GCAATG	2 cut(s)	330, 662
BseMII	CTCAG	2 cut(s)	504, 710
BseNI	ACTGG	3 cut(s)	51, 227, 396
BseXI	GCAGC	1 cut(s)	967
BshFI	GGCC	5 cut(s)	13, 47, 58, 965, 1023
BsiHKAI	GWGCWC	1 cut(s)	900
BsiHKCI	CYCGRG	3 cut(s)	111, 165, 174
BsiSI	CCGG	1 cut(s)	248
BslI	CCNNNNNNNGG	4 cut(s)	54, 165, 644, 1019
BsmAI	GTCTC	1 cut(s)	720
BsnI	GGCC	5 cut(s)	13, 47, 58, 965, 1023
Bso31I	GGTCTC	1 cut(s)	720
BsoBI	CYCGRG	3 cut(s)	111, 165, 174
Bsp1286I	GDGCHC	2 cut(s)	181, 900
Bsp143I	GATC	6 cut(s)	225, 232, 256, 352, 434, 808
BspACI	CCGC	2 cut(s)	623, 978
BspANI	GGCC	5 cut(s)	13, 47, 58, 965, 1023
BspCNI	CTCAG	2 cut(s)	505, 711
BspLI	GGNNCC	1 cut(s)	14
BspOI	GCTAGC	1 cut(s)	204
BspPI	GGATC	2 cut(s)	233, 360
BspQI	GCTCTTC	1 cut(s)	186
BspTNI	GGTCTC	1 cut(s)	720
BsrDI	GCAATG	2 cut(s)	330, 662
BsrI	ACTGG	3 cut(s)	51, 227, 396
BssECI	CCNNGG	2 cut(s)	267, 318
BssMI	GATC	6 cut(s)	225, 232, 256, 352, 434, 808
BssSI	CACGAG	2 cut(s)	236, 945
BssT1I	CCWWGG	1 cut(s)	267
Bst2BI	CACGAG	2 cut(s)	236, 945
Bst2UI	CCWGG	1 cut(s)	606
Bst4CI	ACNGT	1 cut(s)	277
Bst6I	CTCTTC	4 cut(s)	186, 362, 519, 577
BstAPI	GCANNNNNTGC	1 cut(s)	73
BstC8I	GCNNGC	1 cut(s)	202
BstDEI	CTNAG	4 cut(s)	205, 469, 513, 719
BstF5I	GGATG	3 cut(s)	34, 105, 742
BstHHI	GCGC	1 cut(s)	726
BstKTI	GATC	6 cut(s)	228, 235, 259, 355, 437, 811
BstMAI	GTCTC	1 cut(s)	720
BstMBI	GATC	6 cut(s)	225, 232, 256, 352, 434, 808
BstMWI	GCNNNNNNNGC	6 cut(s)	10, 64, 73, 136, 176, 598
BstNI	CCWGG	1 cut(s)	606
BstSCI	CCNGG	2 cut(s)	246, 604
BstV1I	GCAGC	1 cut(s)	967
BstV2I	GAAGAC	1 cut(s)	480
BsuRI	GGCC	5 cut(s)	13, 47, 58, 965, 1023
BtsCI	GGATG	3 cut(s)	34, 105, 742
Cac8I	GCNNGC	1 cut(s)	202
CaiI	CAGNNNCTG	1 cut(s)	620
CfoI	GCGC	1 cut(s)	726
Cfr13I	GGNCC	1 cut(s)	12
Csp6I	GTAC	1 cut(s)	752
CviAII	CATG	3 cut(s)	306, 451, 961
CviQI	GTAC	1 cut(s)	752
DdeI	CTNAG	4 cut(s)	205, 469, 513, 719
DpnI	GATC	6 cut(s)	227, 234, 258, 354, 436, 810
DpnII	GATC	6 cut(s)	225, 232, 256, 352, 434, 808
DraI	TTTAAA	1 cut(s)	25
EaeI	YGGCCR	2 cut(s)	56, 963
Eam1104I	CTCTTC	4 cut(s)	186, 362, 519, 577
EarI	CTCTTC	4 cut(s)	186, 362, 519, 577
Ecl136II	GAGCTC	1 cut(s)	898
Eco130I	CCWWGG	1 cut(s)	267
Eco24I	GRGCYC	2 cut(s)	181, 900
Eco31I	GGTCTC	1 cut(s)	720
Eco53kI	GAGCTC	1 cut(s)	898
Eco57I	CTGAAG	2 cut(s)	939, 1013
Eco88I	CYCGRG	3 cut(s)	111, 165, 174
EcoICRI	GAGCTC	1 cut(s)	898
EcoRI	GAATTC	2 cut(s)	508, 546
EcoRII	CCWGG	1 cut(s)	604
EcoT14I	CCWWGG	1 cut(s)	267
EcoT38I	GRGCYC	2 cut(s)	181, 900
ErhI	CCWWGG	1 cut(s)	267
FaeI	CATG	3 cut(s)	309, 454, 964
FalI	AAGNNNNNCTT	2 cut(s)	452, 484
FatI	CATG	3 cut(s)	305, 450, 960
FbaI	TGATCA	2 cut(s)	232, 256
FblI	GTMKAC	1 cut(s)	279
Fnu4HI	GCNGC	1 cut(s)	981
FokI	GGATG	3 cut(s)	21, 112, 749
FriOI	GRGCYC	2 cut(s)	181, 900
Fsp4HI	GCNGC	1 cut(s)	981
FspBI	CTAG	4 cut(s)	201, 560, 747, 1032
GlaI	GCGC	1 cut(s)	725
GluI	GCNGC	1 cut(s)	981
GsuI	CTGGAG	2 cut(s)	34, 282
HaeIII	GGCC	5 cut(s)	13, 47, 58, 965, 1023
HapII	CCGG	1 cut(s)	248
HhaI	GCGC	1 cut(s)	726
Hin1II	CATG	3 cut(s)	309, 454, 964
Hin6I	GCGC	1 cut(s)	724
HinP1I	GCGC	1 cut(s)	724
HincII	GTYRAC	1 cut(s)	958
HindII	GTYRAC	1 cut(s)	958
HindIII	AAGCTT	1 cut(s)	590
HinfI	GANTC	5 cut(s)	143, 293, 430, 802, 834
HpaII	CCGG	1 cut(s)	248
HphI	GGTGA	2 cut(s)	23, 307
Hpy166II	GTNNAC	3 cut(s)	118, 280, 958
Hpy188I	TCNGA	6 cut(s)	261, 507, 514, 691, 720, 988
Hpy188III	TCNNGA	9 cut(s)	134, 236, 299, 806, 812, 823, 893, 947, 1032
Hpy8I	GTNNAC	3 cut(s)	118, 280, 958
Hpy99I	CGWCG	1 cut(s)	759
HpyAV	CCTTC	4 cut(s)	27, 415, 772, 1034
HpyCH4III	ACNGT	1 cut(s)	277
HpyCH4IV	ACGT	1 cut(s)	490
HpyCH4V	TGCA	4 cut(s)	67, 683, 797, 1001
HpyF10VI	GCNNNNNNNGC	6 cut(s)	10, 64, 73, 136, 176, 598
HpyF3I	CTNAG	4 cut(s)	205, 469, 513, 719
HpySE526I	ACGT	1 cut(s)	490
Hsp92II	CATG	3 cut(s)	309, 454, 964
HspAI	GCGC	1 cut(s)	724
Ksp22I	TGATCA	2 cut(s)	232, 256
Kzo9I	GATC	6 cut(s)	225, 232, 256, 352, 434, 808
LguI	GCTCTTC	1 cut(s)	186
Lsp1109I	GCAGC	1 cut(s)	967
LweI	GCATC	3 cut(s)	252, 626, 733
MaeI	CTAG	4 cut(s)	201, 560, 747, 1032
MaeII	ACGT	1 cut(s)	490
MaeIII	GTNAC	1 cut(s)	271
MalI	GATC	6 cut(s)	227, 234, 258, 354, 436, 810
MboI	GATC	6 cut(s)	225, 232, 256, 352, 434, 808
MboII	GAAGA	9 cut(s)	173, 379, 389, 392, 485, 536, 594, 838, 932
MhlI	GDGCHC	2 cut(s)	181, 900
MlsI	TGGCCA	2 cut(s)	58, 965
MluCI	AATT	5 cut(s)	125, 395, 508, 546, 818
MluNI	TGGCCA	2 cut(s)	58, 965
MlyI	GAGTC	1 cut(s)	828
MmeI	TCCRAC	2 cut(s)	766, 844
Mox20I	TGGCCA	2 cut(s)	58, 965
MscI	TGGCCA	2 cut(s)	58, 965
MseI	TTAA	4 cut(s)	24, 347, 588, 710
MslI	CAYNNNNRTG	2 cut(s)	240, 735
Msp20I	TGGCCA	2 cut(s)	58, 965
MspA1I	CMGCKG	1 cut(s)	980
MspI	CCGG	1 cut(s)	248
MspR9I	CCNGG	2 cut(s)	248, 606
MvaI	CCWGG	1 cut(s)	606
MwoI	GCNNNNNNNGC	6 cut(s)	10, 64, 73, 136, 176, 598
NciI	CCSGG	1 cut(s)	248
NdeII	GATC	6 cut(s)	225, 232, 256, 352, 434, 808
NheI	GCTAGC	1 cut(s)	200
NlaIII	CATG	3 cut(s)	309, 454, 964
NlaIV	GGNNCC	1 cut(s)	14
PaeR7I	CTCGAG	1 cut(s)	111
PciSI	GCTCTTC	1 cut(s)	186
PfeI	GAWTC	4 cut(s)	143, 293, 430, 802
PkrI	GCNGC	1 cut(s)	982
PleI	GAGTC	1 cut(s)	828
PpsI	GAGTC	1 cut(s)	828
Psp124BI	GAGCTC	1 cut(s)	900
Psp6I	CCWGG	1 cut(s)	604
PspGI	CCWGG	1 cut(s)	604
PspN4I	GGNNCC	1 cut(s)	14
PspPI	GGNCC	1 cut(s)	12
PspXI	VCTCGAGB	1 cut(s)	111
PsrI	GAACNNNNNNTAC	2 cut(s)	618, 650
PstNI	CAGNNNCTG	1 cut(s)	620
RsaI	GTAC	1 cut(s)	753
RsaNI	GTAC	1 cut(s)	752
RseI	CAYNNNNRTG	2 cut(s)	240, 735
SacI	GAGCTC	1 cut(s)	900
SapI	GCTCTTC	1 cut(s)	186
SaqAI	TTAA	4 cut(s)	24, 347, 588, 710
SatI	GCNGC	1 cut(s)	981
Sau3AI	GATC	6 cut(s)	225, 232, 256, 352, 434, 808
Sau96I	GGNCC	1 cut(s)	12
SchI	GAGTC	1 cut(s)	828
ScrFI	CCNGG	2 cut(s)	248, 606
SduI	GDGCHC	2 cut(s)	181, 900
SfaNI	GCATC	3 cut(s)	252, 626, 733
Sfr274I	CTCGAG	1 cut(s)	111
SlaI	CTCGAG	1 cut(s)	111
SmiMI	CAYNNNNRTG	2 cut(s)	240, 735
SmlI	CTYRAG	2 cut(s)	111, 893
SmoI	CTYRAG	2 cut(s)	111, 893
Sse9I	AATT	5 cut(s)	125, 395, 508, 546, 818
SsiI	CCGC	2 cut(s)	623, 978
SspMI	CTAG	4 cut(s)	201, 560, 747, 1032
SstI	GAGCTC	1 cut(s)	900
StyD4I	CCNGG	2 cut(s)	246, 604
StyI	CCWWGG	1 cut(s)	267
TaaI	ACNGT	1 cut(s)	277
TaiI	ACGT	1 cut(s)	493
TaqI	TCGA	2 cut(s)	112, 433
TasI	AATT	5 cut(s)	125, 395, 508, 546, 818
TfiI	GAWTC	4 cut(s)	143, 293, 430, 802
Tru1I	TTAA	4 cut(s)	24, 347, 588, 710
Tru9I	TTAA	4 cut(s)	24, 347, 588, 710
TseI	GCWGC	1 cut(s)	980
TspDTI	ATGAA	4 cut(s)	9, 173, 341, 495
XapI	RAATTY	3 cut(s)	508, 546, 818
XbaI	TCTAGA	1 cut(s)	1031
XhoI	CTCGAG	1 cut(s)	111
XmiI	GTMKAC	1 cut(s)	279
XspI	CTAG	4 cut(s)	201, 560, 747, 1032

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.