Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0004919

Physical Location & Seq

Genomic Coordinates Reverse (-)

30141482 .. 30144837

Gene Structure 3356 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1173000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGGCTGTCCTCCGACTCCTCCCATCCTTACAATGCTTCTATTGCAGGACTCCTCAATTCCCATTTTTTCATTTAAAACTCTCAATTCCCAACTCTTCTCCGATTTCGACCCGAAACTGCAAACCTTTTCTGGCCGAAAATACAGGCATGGCTGTTCCCGAAGTGGACAAGAAATTGCTTGGAGAGCTTGAAGCAATGGGATTTCCGAGACCCCGAGCAACTCGAGCGCTTCATTATTCTGGTAATGCCGGCTTAGAGGCTGCTATAGATTGGATTATTGATCACAATGATGATCCGGACATTGATGAGATGCCCTTGGTAACTGCGGACATTAACATTGAATCTCCAGAACCACTCTACATCACGGAAGGGATGAAATTGAAAGCACAGGAGTTAAGGAATAGAGCACGCAAGAAGAAGGAAGATGAAGAAAAGAAATTGGAACGAGAAAGGGAGAAGGAGAGGATTCAATCTGGCAAGCAACTCTTAGAAACAAAGCGAACTTTAGAAGAAAATGAAAGAAAACGCAATATAGAGTTCCGGCAAGCTGAGAAGGAGGAAGAGAAACGAGCAAGAGAGAGAATTCGCAGGAAATTAGAACAGGATAAGTTAGAAAGAAGGACCAAGCTTGGATTGCCACTGGGACAACCTGCACCCGAGAAACCTTCAACACCTTTAGCAAGTGAAAAACAGAATCCAATTCGTGTCAGTTCTGTTGCAAAATCGGAACACATGAGAGAGTGTTTAAGGTCCTTGAAGCGCAACCATAAGGATGATGATGCTAAAGTGCGAAGGGGCTTCCAGACTCTGCAAATTTATGTGGGAAATGTTGCAAAGAATCCTGATGAAGAAAAATTCAGGAAGATCAGACTCAGTAATCCGTTGTTCTTGGATAGAGTTGGCAGTTTGGTTGGAGGAATCGAGTTTCTTGAGCTCTGTGGATTCGAGAGAACAGAAGGGGAAGAGTTTTTGTATCTTCCTCGGGACAAGGTTGACATGGCCACATTATACTCAGCTGCTTCTCATCTGAAGAATGCATTGACGAACCCCTTCTTTGGCCTTCTGCAGTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PUB UBA

Protein Analysis

358

Amino Acids

41.28

Weight (kDa)

9.0

Isoelectric Point (pI)

55.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UBA_7	PF22562	56 - 103	1.7e-18	UBA-like domain
UBA	PF00627	59 - 92	2.5e-07	UBA/TS-N domain
PUB	PF09409	262 - 332	3.5e-21	PUB domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004919)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48690 AT5G48690 AT5G48690
fragaria_vesca	FvH4_2g18750 FvH4_2g18750
malus_domestica	MD05G1173000.v1.1
prunus_persica	Prupe.8G200600_v2.0.a1 Prupe.8G200600_v2.0.a1 Prupe.8G200600_v2.0.a1 Prupe.8G200600_v2.0.a1 Prupe.8G200600_v2.0.a1
pyrus_communis	pycom05g15970
rosa_chinensis	RchiOBHm_Chr6g0284421 RchiOBHm_Chr6g0284441
rosa_laevigata	RLG00000012745
rosa_multiflora	Rmu_sc0005959.1_g000001 Rmu_sc0032923.1_g000001
rosa_roxburghii	Rroxscaffold_7G00184710
rosa_rugosa	Rorug06G0163100 Rorug06G0163200 Rorug06G0163300 Rorug06G0163400 Rorug06G0163500 Rorug06G0163600 Rorug06G0163700
rosa_samantha	Rh6AG275900 Rh6BG276300 Rh6CG278300 Rh6CG278400
rosa_wichuraiana	Rw6G023740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	658
AccIII	TCCGGA	1 cut(s)	295
AciI	CCGC	1 cut(s)	326
AclWI	GGATC	1 cut(s)	287
AcoI	YGGCCR	2 cut(s)	132, 999
AcsI	RAATTY	3 cut(s)	582, 813, 854
AcuI	CTGAAG	1 cut(s)	1049
AfeI	AGCGCT	1 cut(s)	228
AfiI	CCNNNNNNNGG	1 cut(s)	1055
AgsI	TTSAA	6 cut(s)	191, 341, 382, 470, 669, 757
AluBI	AGCT	5 cut(s)	187, 548, 628, 934, 1016
AluI	AGCT	5 cut(s)	187, 548, 628, 934, 1016
Alw21I	GWGCWC	2 cut(s)	409, 936
Alw26I	GTCTC	1 cut(s)	202
AlwI	GGATC	1 cut(s)	287
AlwNI	CAGNNNCTG	1 cut(s)	808
Ama87I	CYCGRG	4 cut(s)	213, 222, 656, 981
Aor13HI	TCCGGA	1 cut(s)	295
Aor51HI	AGCGCT	1 cut(s)	228
AoxI	GGCC	3 cut(s)	132, 999, 1057
ApeKI	GCWGC	2 cut(s)	260, 1016
ApoI	RAATTY	3 cut(s)	582, 813, 854
Asp700I	GAANNNNTTC	1 cut(s)	1049
AspLEI	GCGC	2 cut(s)	229, 762
AspS9I	GGNCC	2 cut(s)	621, 750
AvaI	CYCGRG	4 cut(s)	213, 222, 656, 981
AvaII	GGWCC	2 cut(s)	621, 750
BalI	TGGCCA	1 cut(s)	1001
BanII	GRGCYC	1 cut(s)	936
Bbv12I	GWGCWC	2 cut(s)	409, 936
BbvI	GCAGC	2 cut(s)	247, 1003
BccI	CCATC	1 cut(s)	31
BclI	TGATCA	1 cut(s)	280
BcoDI	GTCTC	1 cut(s)	202
BfmI	CTRYAG	2 cut(s)	264, 1064
BfoI	RGCGCY	1 cut(s)	230
BfuAI	ACCTGC	1 cut(s)	658
BisI	GCNGC	2 cut(s)	261, 1017
BlsI	GCNGC	2 cut(s)	262, 1018
Bme18I	GGWCC	2 cut(s)	621, 750
BmeT110I	CYCGRG	4 cut(s)	213, 222, 656, 981
BmgT120I	GGNCC	2 cut(s)	621, 750
BmrI	ACTGGG	1 cut(s)	650
BmsI	GCATC	2 cut(s)	300, 769
BmuI	ACTGGG	1 cut(s)	650
BpmI	CTGGAG	1 cut(s)	330
BpuEI	CTTGAG	1 cut(s)	950
BsaI	GGTCTC	1 cut(s)	202
BsaJI	CCNNGG	2 cut(s)	315, 980
BsaWI	WCCGGW	1 cut(s)	295
Bsc4I	CCNNNNNNNGG	1 cut(s)	1055
Bse118I	RCCGGY	1 cut(s)	248
Bse1I	ACTGG	1 cut(s)	645
Bse3DI	GCAATG	1 cut(s)	201
BseAI	TCCGGA	1 cut(s)	295
BseDI	CCNNGG	2 cut(s)	315, 980
BseGI	GGATG	3 cut(s)	23, 378, 778
BseLI	CCNNNNNNNGG	1 cut(s)	1055
BseMI	GCAATG	1 cut(s)	201
BseMII	CTCAG	3 cut(s)	540, 886, 1026
BseNI	ACTGG	1 cut(s)	645
BseRI	GAGGAG	2 cut(s)	8, 42
BseXI	GCAGC	2 cut(s)	247, 1003
BsgI	GTGCAG	1 cut(s)	636
BshFI	GGCC	3 cut(s)	134, 1001, 1059
BsiHKAI	GWGCWC	2 cut(s)	409, 936
BsiHKCI	CYCGRG	4 cut(s)	213, 222, 656, 981
BsiSI	CCGG	3 cut(s)	249, 296, 541
BslFI	GGGAC	2 cut(s)	657, 998
BslI	CCNNNNNNNGG	1 cut(s)	1055
BsmAI	GTCTC	1 cut(s)	202
BsmFI	GGGAC	2 cut(s)	657, 998
BsmI	GAATGC	1 cut(s)	1039
BsnI	GGCC	3 cut(s)	134, 1001, 1059
Bso31I	GGTCTC	1 cut(s)	202
BsoBI	CYCGRG	4 cut(s)	213, 222, 656, 981
Bsp1286I	GDGCHC	2 cut(s)	409, 936
Bsp13I	TCCGGA	1 cut(s)	295
Bsp143I	GATC	3 cut(s)	280, 292, 864
BspACI	CCGC	1 cut(s)	326
BspANI	GGCC	3 cut(s)	134, 1001, 1059
BspCNI	CTCAG	3 cut(s)	541, 885, 1025
BspEI	TCCGGA	1 cut(s)	295
BspMAI	CTGCAG	1 cut(s)	1068
BspMI	ACCTGC	1 cut(s)	658
BspPI	GGATC	1 cut(s)	287
BspTNI	GGTCTC	1 cut(s)	202
BsrDI	GCAATG	1 cut(s)	201
BsrFI	RCCGGY	1 cut(s)	248
BsrI	ACTGG	1 cut(s)	645
BssAI	RCCGGY	1 cut(s)	248
BssECI	CCNNGG	2 cut(s)	315, 980
BssMI	GATC	3 cut(s)	280, 292, 864
BssT1I	CCWWGG	1 cut(s)	315
Bst6I	CTCTTC	3 cut(s)	100, 555, 957
BstC8I	GCNNGC	4 cut(s)	250, 409, 479, 546
BstDEI	CTNAG	5 cut(s)	253, 487, 549, 872, 1012
BstF5I	GGATG	3 cut(s)	23, 378, 778
BstH2I	RGCGCY	1 cut(s)	230
BstHHI	GCGC	2 cut(s)	229, 762
BstKTI	GATC	3 cut(s)	283, 295, 867
BstMAI	GTCTC	1 cut(s)	202
BstMBI	GATC	3 cut(s)	280, 292, 864
BstMWI	GCNNNNNNNGC	4 cut(s)	42, 184, 224, 634
BstSFI	CTRYAG	2 cut(s)	264, 1064
BstV1I	GCAGC	2 cut(s)	247, 1003
BsuRI	GGCC	3 cut(s)	134, 1001, 1059
BtsCI	GGATG	3 cut(s)	23, 378, 778
BtsIMutI	CAGTG	1 cut(s)	638
BveI	ACCTGC	1 cut(s)	658
Cac8I	GCNNGC	4 cut(s)	250, 409, 479, 546
CaiI	CAGNNNCTG	1 cut(s)	808
CfoI	GCGC	2 cut(s)	229, 762
Cfr10I	RCCGGY	1 cut(s)	248
Cfr13I	GGNCC	2 cut(s)	621, 750
CviAII	CATG	3 cut(s)	148, 733, 997
DdeI	CTNAG	5 cut(s)	253, 487, 549, 872, 1012
DpnI	GATC	3 cut(s)	282, 294, 866
DpnII	GATC	3 cut(s)	280, 292, 864
DraI	TTTAAA	1 cut(s)	75
EaeI	YGGCCR	2 cut(s)	132, 999
Eam1104I	CTCTTC	3 cut(s)	100, 555, 957
EarI	CTCTTC	3 cut(s)	100, 555, 957
Ecl136II	GAGCTC	1 cut(s)	934
Eco130I	CCWWGG	1 cut(s)	315
Eco24I	GRGCYC	1 cut(s)	936
Eco31I	GGTCTC	1 cut(s)	202
Eco47I	GGWCC	2 cut(s)	621, 750
Eco47III	AGCGCT	1 cut(s)	228
Eco53kI	GAGCTC	1 cut(s)	934
Eco57I	CTGAAG	1 cut(s)	1049
Eco88I	CYCGRG	4 cut(s)	213, 222, 656, 981
EcoICRI	GAGCTC	1 cut(s)	934
EcoO109I	RGGNCCY	1 cut(s)	750
EcoRI	GAATTC	1 cut(s)	582
EcoT14I	CCWWGG	1 cut(s)	315
EcoT22I	ATGCAT	1 cut(s)	1039
EcoT38I	GRGCYC	1 cut(s)	936
ErhI	CCWWGG	1 cut(s)	315
FaeI	CATG	3 cut(s)	151, 736, 1000
FaiI	YATR	8 cut(s)	149, 266, 533, 734, 768, 819, 998, 1009
FalI	AAGNNNNNCTT	2 cut(s)	470, 502
FaqI	GGGAC	2 cut(s)	657, 998
FatI	CATG	3 cut(s)	147, 732, 996
FbaI	TGATCA	1 cut(s)	280
Fnu4HI	GCNGC	2 cut(s)	261, 1017
FokI	GGATG	3 cut(s)	10, 385, 785
FriOI	GRGCYC	1 cut(s)	936
Fsp4HI	GCNGC	2 cut(s)	261, 1017
GlaI	GCGC	2 cut(s)	228, 761
GluI	GCNGC	2 cut(s)	261, 1017
GsuI	CTGGAG	1 cut(s)	330
HaeII	RGCGCY	1 cut(s)	230
HaeIII	GGCC	3 cut(s)	134, 1001, 1059
HapII	CCGG	3 cut(s)	249, 296, 541
HhaI	GCGC	2 cut(s)	229, 762
Hin1II	CATG	3 cut(s)	151, 736, 1000
Hin6I	GCGC	2 cut(s)	227, 760
HinP1I	GCGC	2 cut(s)	227, 760
HincII	GTYRAC	1 cut(s)	994
HindII	GTYRAC	1 cut(s)	994
HindIII	AAGCTT	1 cut(s)	626
HpaII	CCGG	3 cut(s)	249, 296, 541
Hpy166II	GTNNAC	2 cut(s)	166, 994
Hpy188I	TCNGA	6 cut(s)	14, 102, 207, 727, 869, 1029
Hpy188III	TCNNGA	9 cut(s)	158, 296, 347, 802, 842, 859, 929, 946, 983
Hpy8I	GTNNAC	2 cut(s)	166, 994
HpyCH4V	TGCA	8 cut(s)	45, 120, 653, 719, 811, 833, 1037, 1066
HpyF10VI	GCNNNNNNNGC	4 cut(s)	42, 184, 224, 634
HpyF3I	CTNAG	5 cut(s)	253, 487, 549, 872, 1012
Hsp92II	CATG	3 cut(s)	151, 736, 1000
HspAI	GCGC	2 cut(s)	227, 760
Kpn2I	TCCGGA	1 cut(s)	295
KroI	GCCGGC	1 cut(s)	248
KroNI	GCCGGC	1 cut(s)	250
Ksp22I	TGATCA	1 cut(s)	280
Kzo9I	GATC	3 cut(s)	280, 292, 864
Lsp1109I	GCAGC	2 cut(s)	247, 1003
LweI	GCATC	2 cut(s)	300, 769
MaeIII	GTNAC	1 cut(s)	319
MalI	GATC	3 cut(s)	282, 294, 866
MboI	GATC	3 cut(s)	280, 292, 864
MhlI	GDGCHC	2 cut(s)	409, 936
MlsI	TGGCCA	1 cut(s)	1001
MluNI	TGGCCA	1 cut(s)	1001
MlyI	GAGTC	4 cut(s)	9, 43, 799, 864
MmeI	TCCRAC	2 cut(s)	37, 892
MnlI	CCTC	8 cut(s)	20, 29, 63, 250, 456, 550, 908, 990
Mox20I	TGGCCA	1 cut(s)	1001
Mph1103I	ATGCAT	1 cut(s)	1039
MroI	TCCGGA	1 cut(s)	295
MroNI	GCCGGC	1 cut(s)	248
MroXI	GAANNNNTTC	1 cut(s)	1049
MscI	TGGCCA	1 cut(s)	1001
MseI	TTAA	4 cut(s)	74, 333, 395, 746
MslI	CAYNNNNRTG	2 cut(s)	288, 771
Msp20I	TGGCCA	1 cut(s)	1001
MspA1I	CMGCKG	1 cut(s)	1016
MspI	CCGG	3 cut(s)	249, 296, 541
Mva1269I	GAATGC	1 cut(s)	1039
MwoI	GCNNNNNNNGC	4 cut(s)	42, 184, 224, 634
NaeI	GCCGGC	1 cut(s)	250
NdeII	GATC	3 cut(s)	280, 292, 864
NgoMIV	GCCGGC	1 cut(s)	248
NlaIII	CATG	3 cut(s)	151, 736, 1000
NsiI	ATGCAT	1 cut(s)	1039
PaeR7I	CTCGAG	1 cut(s)	222
PctI	GAATGC	1 cut(s)	1039
PdiI	GCCGGC	1 cut(s)	250
PdmI	GAANNNNTTC	1 cut(s)	1049
PfeI	GAWTC	6 cut(s)	341, 466, 694, 838, 918, 942
PkrI	GCNGC	2 cut(s)	262, 1018
PleI	GAGTC	4 cut(s)	9, 43, 799, 864
PpsI	GAGTC	4 cut(s)	9, 43, 799, 864
PpuMI	RGGWCCY	1 cut(s)	750
Psp124BI	GAGCTC	1 cut(s)	936
Psp5II	RGGWCCY	1 cut(s)	750
PspPI	GGNCC	2 cut(s)	621, 750
PspPPI	RGGWCCY	1 cut(s)	750
PspXI	VCTCGAGB	1 cut(s)	222
PstI	CTGCAG	1 cut(s)	1068
PstNI	CAGNNNCTG	1 cut(s)	808
PvuII	CAGCTG	1 cut(s)	1016
RseI	CAYNNNNRTG	2 cut(s)	288, 771
SacI	GAGCTC	1 cut(s)	936
SaqAI	TTAA	4 cut(s)	74, 333, 395, 746
SatI	GCNGC	2 cut(s)	261, 1017
Sau3AI	GATC	3 cut(s)	280, 292, 864
Sau96I	GGNCC	2 cut(s)	621, 750
SchI	GAGTC	4 cut(s)	9, 43, 799, 864
SduI	GDGCHC	2 cut(s)	409, 936
SfaNI	GCATC	2 cut(s)	300, 769
SfcI	CTRYAG	2 cut(s)	264, 1064
Sfr274I	CTCGAG	1 cut(s)	222
SinI	GGWCC	2 cut(s)	621, 750
SlaI	CTCGAG	1 cut(s)	222
SmiMI	CAYNNNNRTG	2 cut(s)	288, 771
SmlI	CTYRAG	2 cut(s)	222, 929
SmoI	CTYRAG	2 cut(s)	222, 929
SsiI	CCGC	1 cut(s)	326
SstI	GAGCTC	1 cut(s)	936
StyI	CCWWGG	1 cut(s)	315
TaqI	TCGA	4 cut(s)	107, 223, 921, 945
TfiI	GAWTC	6 cut(s)	341, 466, 694, 838, 918, 942
Tru1I	TTAA	4 cut(s)	74, 333, 395, 746
Tru9I	TTAA	4 cut(s)	74, 333, 395, 746
TscAI	CASTG	1 cut(s)	645
TseI	GCWGC	2 cut(s)	260, 1016
TspDTI	ATGAA	6 cut(s)	59, 221, 389, 441, 531, 861
TspGWI	ACGGA	2 cut(s)	380, 870
TspRI	CASTG	1 cut(s)	645
VpaK11BI	GGWCC	2 cut(s)	621, 750
XapI	RAATTY	3 cut(s)	582, 813, 854
XhoI	CTCGAG	1 cut(s)	222
XmnI	GAANNNNTTC	1 cut(s)	1049
Zsp2I	ATGCAT	1 cut(s)	1039

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.