Rh6AG275900

UBX domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0004919
Physical Location & Seq
Forward (+)
47038674 .. 47039491
818 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG275900.1

Sequence Viewer

Length: 354 bp
ATGGCTGTTCCTCGAGTAAACAAGAAATTGCATCAAGAGCTTGAATCAATGGGATTTCCCACAGCTCGGGCAACTCGGGCTCTTCATTATTCAGGTAATGCTAGCTTAGAGGCTTGTATAGACTGGATCACTGATCACGAAAATGACCCGGACATTGATCAGATGCCCTTGGTAACAGTAGACATTGATATTGAATCTCCAGAGCCATTCCATATCACCGAGGCAATGAAAATAAAAGCACAAGAGTTAAGGTTACTTTCTCATTGTCTGTGGGTTTGTAGTTACACCACACACACACACATAGATATACAAGTTTTCTCTTTGTTATATGCAATTGCCGGTCAGATATATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PUB UBA

Protein Analysis

117

Amino Acids

13.32

Weight (kDa)

5.15

Isoelectric Point (pI)

53.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UBA_7 PF22562 7 - 54 1.3e-16 UBA-like domain
UBA PF00627 12 - 43 5.4e-06 UBA/TS-N domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 180
AclWI GGATC 1 cut(s) 134
AfiI CCNNNNNNNGG 1 cut(s) 66
AgsI TTSAA 2 cut(s) 44, 194
AluBI AGCT 3 cut(s) 40, 65, 105
AluI AGCT 3 cut(s) 40, 65, 105
AlwI GGATC 1 cut(s) 134
Ama87I CYCGRG 3 cut(s) 12, 66, 75
AsuC2I CCSGG 1 cut(s) 149
AsuHPI GGTGA 1 cut(s) 208
AsuNHI GCTAGC 1 cut(s) 101
AvaI CYCGRG 3 cut(s) 12, 66, 75
BanII GRGCYC 1 cut(s) 82
BclI TGATCA 2 cut(s) 133, 157
BcnI CCSGG 1 cut(s) 149
BfaI CTAG 1 cut(s) 102
Bme1390I CCNGG 1 cut(s) 149
BmeT110I CYCGRG 3 cut(s) 12, 66, 75
BmrFI CCNGG 1 cut(s) 149
BmsI GCATC 2 cut(s) 40, 153
BmtI GCTAGC 1 cut(s) 105
BpmI CTGGAG 1 cut(s) 183
BpuMI CCSGG 1 cut(s) 149
BsaJI CCNNGG 2 cut(s) 168, 219
Bsc4I CCNNNNNNNGG 1 cut(s) 66
Bse118I RCCGGY 1 cut(s) 338
Bse1I ACTGG 1 cut(s) 128
Bse3DI GCAATG 1 cut(s) 231
BseDI CCNNGG 2 cut(s) 168, 219
BseLI CCNNNNNNNGG 1 cut(s) 66
BseMI GCAATG 1 cut(s) 231
BseNI ACTGG 1 cut(s) 128
BsiHKCI CYCGRG 3 cut(s) 12, 66, 75
BsiSI CCGG 2 cut(s) 149, 339
BslI CCNNNNNNNGG 1 cut(s) 66
BsoBI CYCGRG 3 cut(s) 12, 66, 75
Bsp1286I GDGCHC 1 cut(s) 82
Bsp143I GATC 3 cut(s) 126, 133, 157
BspOI GCTAGC 1 cut(s) 105
BspPI GGATC 1 cut(s) 134
BspQI GCTCTTC 1 cut(s) 87
BsrDI GCAATG 1 cut(s) 231
BsrFI RCCGGY 1 cut(s) 338
BsrI ACTGG 1 cut(s) 128
BssAI RCCGGY 1 cut(s) 338
BssECI CCNNGG 2 cut(s) 168, 219
BssMI GATC 3 cut(s) 126, 133, 157
BssT1I CCWWGG 1 cut(s) 168
Bst4CI ACNGT 1 cut(s) 178
Bst6I CTCTTC 1 cut(s) 87
BstC8I GCNNGC 1 cut(s) 103
BstDEI CTNAG 1 cut(s) 106
BstKTI GATC 3 cut(s) 129, 136, 160
BstMBI GATC 3 cut(s) 126, 133, 157
BstMWI GCNNNNNNNGC 2 cut(s) 37, 77
BstSCI CCNGG 1 cut(s) 147
BtsIMutI CAGTG 1 cut(s) 129
Cac8I GCNNGC 1 cut(s) 103
Cfr10I RCCGGY 1 cut(s) 338
CviJI RGCY 7 cut(s) 5, 40, 65, 80, 105, 113, 205
CviKI_1 RGCY 7 cut(s) 5, 40, 65, 80, 105, 113, 205
DdeI CTNAG 1 cut(s) 106
DpnI GATC 3 cut(s) 128, 135, 159
DpnII GATC 3 cut(s) 126, 133, 157
Eam1104I CTCTTC 1 cut(s) 87
EarI CTCTTC 1 cut(s) 87
Eco130I CCWWGG 1 cut(s) 168
Eco24I GRGCYC 1 cut(s) 82
Eco88I CYCGRG 3 cut(s) 12, 66, 75
EcoT14I CCWWGG 1 cut(s) 168
EcoT38I GRGCYC 1 cut(s) 82
ErhI CCWWGG 1 cut(s) 168
FaiI YATR 7 cut(s) 119, 213, 302, 308, 328, 330, 349
FbaI TGATCA 2 cut(s) 133, 157
FblI GTMKAC 1 cut(s) 180
FriOI GRGCYC 1 cut(s) 82
FspBI CTAG 1 cut(s) 102
GsuI CTGGAG 1 cut(s) 183
HapII CCGG 2 cut(s) 149, 339
HinfI GANTC 2 cut(s) 44, 194
HpaII CCGG 2 cut(s) 149, 339
HphI GGTGA 1 cut(s) 208
Hpy166II GTNNAC 2 cut(s) 19, 181
Hpy188I TCNGA 2 cut(s) 162, 345
Hpy188III TCNNGA 3 cut(s) 35, 137, 200
Hpy8I GTNNAC 2 cut(s) 19, 181
HpyCH4III ACNGT 1 cut(s) 178
HpyCH4V TGCA 2 cut(s) 31, 332
HpyF10VI GCNNNNNNNGC 2 cut(s) 37, 77
HpyF3I CTNAG 1 cut(s) 106
Ksp22I TGATCA 2 cut(s) 133, 157
Kzo9I GATC 3 cut(s) 126, 133, 157
LguI GCTCTTC 1 cut(s) 87
LpnPI CCDG 4 cut(s) 78, 109, 162, 213
LweI GCATC 2 cut(s) 40, 153
MaeI CTAG 1 cut(s) 102
MaeIII GTNAC 3 cut(s) 172, 252, 281
MalI GATC 3 cut(s) 128, 135, 159
MboI GATC 3 cut(s) 126, 133, 157
MboII GAAGA 1 cut(s) 74
MfeI CAATTG 1 cut(s) 333
MhlI GDGCHC 1 cut(s) 82
MluCI AATT 2 cut(s) 26, 333
MnlI CCTC 3 cut(s) 21, 103, 214
MseI TTAA 2 cut(s) 248, 352
MslI CAYNNNNRTG 1 cut(s) 141
MspI CCGG 2 cut(s) 149, 339
MspR9I CCNGG 1 cut(s) 149
MunI CAATTG 1 cut(s) 333
MwoI GCNNNNNNNGC 2 cut(s) 37, 77
NciI CCSGG 1 cut(s) 149
NdeII GATC 3 cut(s) 126, 133, 157
NheI GCTAGC 1 cut(s) 101
PaeR7I CTCGAG 1 cut(s) 12
PciSI GCTCTTC 1 cut(s) 87
PfeI GAWTC 2 cut(s) 44, 194
PspXI VCTCGAGB 1 cut(s) 12
RseI CAYNNNNRTG 1 cut(s) 141
SapI GCTCTTC 1 cut(s) 87
SaqAI TTAA 2 cut(s) 248, 352
Sau3AI GATC 3 cut(s) 126, 133, 157
ScrFI CCNGG 1 cut(s) 149
SduI GDGCHC 1 cut(s) 82
SetI ASST 5 cut(s) 42, 67, 97, 107, 254
SfaNI GCATC 2 cut(s) 40, 153
Sfr274I CTCGAG 1 cut(s) 12
SlaI CTCGAG 1 cut(s) 12
SmiMI CAYNNNNRTG 1 cut(s) 141
SmlI CTYRAG 1 cut(s) 12
SmoI CTYRAG 1 cut(s) 12
Sse9I AATT 2 cut(s) 26, 333
SspMI CTAG 1 cut(s) 102
StyD4I CCNGG 1 cut(s) 147
StyI CCWWGG 1 cut(s) 168
TaaI ACNGT 1 cut(s) 178
TaqI TCGA 1 cut(s) 13
TasI AATT 2 cut(s) 26, 333
TfiI GAWTC 2 cut(s) 44, 194
Tru1I TTAA 2 cut(s) 248, 352
Tru9I TTAA 2 cut(s) 248, 352
TscAI CASTG 1 cut(s) 136
TspDTI ATGAA 2 cut(s) 74, 242
TspRI CASTG 1 cut(s) 136
XhoI CTCGAG 1 cut(s) 12
XmiI GTMKAC 1 cut(s) 180
XspI CTAG 1 cut(s) 102
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.