Rorug06G0163600

UBX domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0004919
Physical Location & Seq
Forward (+)
23290899 .. 23292924
2026 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0163600.1

Sequence Viewer

Length: 354 bp
ATGTATCTGCCAGATCTTGCTGTTACCGAAATAGATACAGAAGGGAGGATTTATGTCAATGCTCAAGTTGTGTCATCTGTTCATGTCAATGCTCAAGTTGCAAATCACGAAATTGCTGGCAGTCATCAGTTCAAAACGCTGTATATGGTAGGAGATAATCCCTTAGTTGACATCAAGGGTGCACGACAGGCTGGCCATCCCTGGTTTTCCATTCTGACAAGGACTGGAGTTTTCAAGGGAAAGGAAAATCATGACGAGTTTCCAGCTGATCTGGATCTACAGACAGAAGACATGGGGCGGGTTAAAGAAAACATAGGGAAGAAAGTGAAAAAGAAGATTATGAAGAAGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PUB UBA

Protein Analysis

117

Amino Acids

13.13

Weight (kDa)

8.83

Isoelectric Point (pI)

24.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hydrolase_like PF13242 42 - 87 1.2e-07 HAD-hyrolase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 298
AclWI GGATC 1 cut(s) 282
AcoI YGGCCR 1 cut(s) 193
AgsI TTSAA 2 cut(s) 133, 235
AjnI CCWGG 1 cut(s) 200
AluBI AGCT 1 cut(s) 266
AluI AGCT 1 cut(s) 266
Alw21I GWGCWC 1 cut(s) 184
Alw44I GTGCAC 1 cut(s) 180
AlwI GGATC 1 cut(s) 282
AoxI GGCC 1 cut(s) 193
ApaLI GTGCAC 1 cut(s) 180
BaeGI GKGCMC 1 cut(s) 184
BalI TGGCCA 1 cut(s) 195
BbsI GAAGAC 1 cut(s) 294
Bbv12I GWGCWC 1 cut(s) 184
BccI CCATC 1 cut(s) 204
BciT130I CCWGG 1 cut(s) 202
BfmI CTRYAG 1 cut(s) 278
BglII AGATCT 1 cut(s) 13
Bme1390I CCNGG 1 cut(s) 202
BmrFI CCNGG 1 cut(s) 202
BpiI GAAGAC 1 cut(s) 294
BpmI CTGGAG 1 cut(s) 246
BpuEI CTTGAG 2 cut(s) 48, 78
BsaBI GATNNNNATC 1 cut(s) 273
BsaJI CCNNGG 1 cut(s) 200
Bse1I ACTGG 1 cut(s) 229
Bse8I GATNNNNATC 1 cut(s) 273
BseBI CCWGG 1 cut(s) 202
BseDI CCNNGG 1 cut(s) 200
BseGI GGATG 1 cut(s) 196
BseJI GATNNNNATC 1 cut(s) 273
BseNI ACTGG 1 cut(s) 229
BseSI GKGCMC 1 cut(s) 184
BshFI GGCC 1 cut(s) 195
BsiHKAI GWGCWC 1 cut(s) 184
BsnI GGCC 1 cut(s) 195
Bsp1286I GDGCHC 1 cut(s) 184
Bsp143I GATC 3 cut(s) 13, 268, 274
BspACI CCGC 1 cut(s) 298
BspANI GGCC 1 cut(s) 195
BspHI TCATGA 1 cut(s) 250
BspPI GGATC 1 cut(s) 282
BsrI ACTGG 1 cut(s) 229
BssECI CCNNGG 1 cut(s) 200
BssMI GATC 3 cut(s) 13, 268, 274
Bst2UI CCWGG 1 cut(s) 202
BstC8I GCNNGC 2 cut(s) 118, 193
BstDEI CTNAG 1 cut(s) 163
BstF5I GGATG 1 cut(s) 196
BstKTI GATC 3 cut(s) 16, 271, 277
BstMBI GATC 3 cut(s) 13, 268, 274
BstMWI GCNNNNNNNGC 2 cut(s) 98, 188
BstNI CCWGG 1 cut(s) 202
BstSCI CCNGG 1 cut(s) 200
BstSFI CTRYAG 1 cut(s) 278
BstSLI GKGCMC 1 cut(s) 184
BstV2I GAAGAC 1 cut(s) 294
BstX2I RGATCY 2 cut(s) 13, 274
BstYI RGATCY 2 cut(s) 13, 274
BsuRI GGCC 1 cut(s) 195
BtsCI GGATG 1 cut(s) 196
Cac8I GCNNGC 2 cut(s) 118, 193
CciI TCATGA 1 cut(s) 250
CviAII CATG 3 cut(s) 83, 251, 292
CviJI RGCY 3 cut(s) 191, 195, 266
CviKI_1 RGCY 3 cut(s) 191, 195, 266
DdeI CTNAG 1 cut(s) 163
DpnI GATC 3 cut(s) 15, 270, 276
DpnII GATC 3 cut(s) 13, 268, 274
EaeI YGGCCR 1 cut(s) 193
EcoRII CCWGG 1 cut(s) 200
FaeI CATG 3 cut(s) 86, 254, 295
FaiI YATR 8 cut(s) 54, 84, 144, 146, 252, 293, 314, 341
FatI CATG 3 cut(s) 82, 250, 291
FauI CCCGC 1 cut(s) 291
FokI GGATG 1 cut(s) 183
GsuI CTGGAG 1 cut(s) 246
HaeIII GGCC 1 cut(s) 195
Hin1II CATG 3 cut(s) 86, 254, 295
HincII GTYRAC 1 cut(s) 169
HindII GTYRAC 1 cut(s) 169
Hpy166II GTNNAC 2 cut(s) 169, 182
Hpy188I TCNGA 1 cut(s) 216
Hpy188III TCNNGA 3 cut(s) 107, 251, 272
Hpy8I GTNNAC 2 cut(s) 169, 182
HpyAV CCTTC 1 cut(s) 35
HpyCH4V TGCA 2 cut(s) 101, 182
HpyF10VI GCNNNNNNNGC 2 cut(s) 98, 188
HpyF3I CTNAG 1 cut(s) 163
Hsp92II CATG 3 cut(s) 86, 254, 295
Kzo9I GATC 3 cut(s) 13, 268, 274
LpnPI CCDG 9 cut(s) 24, 102, 173, 177, 187, 210, 214, 257, 276
MaeIII GTNAC 1 cut(s) 22
MalI GATC 3 cut(s) 15, 270, 276
MboI GATC 3 cut(s) 13, 268, 274
MboII GAAGA 3 cut(s) 299, 331, 346
MflI RGATCY 2 cut(s) 13, 274
MhlI GDGCHC 1 cut(s) 184
MlsI TGGCCA 1 cut(s) 195
MluCI AATT 1 cut(s) 111
MluNI TGGCCA 1 cut(s) 195
MnlI CCTC 1 cut(s) 39
Mox20I TGGCCA 1 cut(s) 195
MscI TGGCCA 1 cut(s) 195
MseI TTAA 1 cut(s) 303
MslI CAYNNNNRTG 1 cut(s) 87
Msp20I TGGCCA 1 cut(s) 195
MspA1I CMGCKG 1 cut(s) 266
MspR9I CCNGG 1 cut(s) 202
MvaI CCWGG 1 cut(s) 202
MwoI GCNNNNNNNGC 2 cut(s) 98, 188
NdeII GATC 3 cut(s) 13, 268, 274
NlaIII CATG 3 cut(s) 86, 254, 295
PagI TCATGA 1 cut(s) 250
Psp6I CCWGG 1 cut(s) 200
PspGI CCWGG 1 cut(s) 200
PsuI RGATCY 2 cut(s) 13, 274
PvuII CAGCTG 1 cut(s) 266
RseI CAYNNNNRTG 1 cut(s) 87
SaqAI TTAA 1 cut(s) 303
Sau3AI GATC 3 cut(s) 13, 268, 274
ScrFI CCNGG 1 cut(s) 202
SduI GDGCHC 1 cut(s) 184
SetI ASST 1 cut(s) 268
SfcI CTRYAG 1 cut(s) 278
SmiMI CAYNNNNRTG 1 cut(s) 87
SmlI CTYRAG 2 cut(s) 63, 93
SmoI CTYRAG 2 cut(s) 63, 93
Sse9I AATT 1 cut(s) 111
SsiI CCGC 1 cut(s) 298
StyD4I CCNGG 1 cut(s) 200
TasI AATT 1 cut(s) 111
Tru1I TTAA 1 cut(s) 303
Tru9I TTAA 1 cut(s) 303
TspDTI ATGAA 1 cut(s) 71
VneI GTGCAC 1 cut(s) 180
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.