Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0004919

Physical Location & Seq

Genomic Coordinates Reverse (-)

19380884 .. 19383046

Gene Structure 2163 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g15970.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGGCTGTCCTCCGACTCCTCCCATCTTTTCAATGCTTCCATTGCAGGACTCCTCAATTCCCGTCTTTTCATATAAAACTCTCAATTCCCAACTCTTCTCCGATTTTGACCCGAAACTGCAAACCTTTTCTGACCGAAGATACAGGCATGGCTGTTCCGGAAGTGGACAAGAAATTGCTTGGAGAGCTTGAAGCAATGGGATTTCCGAGACCCCGAGCAACTCGAGCGCTTCATTATTCTGGTAATGCCAGCTTAGAGGCTGCTATAGATTGGATTATTGATCACAATGATGATCCGGACATTGATGAGATGCCCTTGGTAACTGTGGACATTAACATCGAATCTCCAGAACCACTCTACATCACGGAAGGGATGAAATTGAAAGCACAGGAATTAAGGAATAGAGCACGCAAGAAGAAGGGAGAAGAAGAAAAGAAATTGGAACGAGAAAGGGAGAAGGAGAGGATTCAATCTGGCAAGCAACTCTTAGAAGCAAAGCGAATTTTAGAAGAAAATGAAAGAAAACGCAATATAGAGTTCCGGCAAGCTGAGAAGGAGGAAGAGAAACGAGCAAGAGAGAGAATTCGCAGGAAATTAGAACAGGATAAGTTAGAAAGAAGGGCCAAGCTTGGATTGCCACTGGAACACCCTGCACCCGAGAAACTTTCAACACCTTTAGCAAGTGAACAACAGGTATTGATATTTTGTAGTGACCTCTATAGACTATGTATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PUB UBA

Protein Analysis

245

Amino Acids

28.42

Weight (kDa)

8.21

Isoelectric Point (pI)

60.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004919)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48690 AT5G48690 AT5G48690
fragaria_vesca	FvH4_2g18750 FvH4_2g18750
malus_domestica	MD05G1173000.v1.1
prunus_persica	Prupe.8G200600_v2.0.a1 Prupe.8G200600_v2.0.a1 Prupe.8G200600_v2.0.a1 Prupe.8G200600_v2.0.a1 Prupe.8G200600_v2.0.a1
pyrus_communis	pycom05g15970
rosa_chinensis	RchiOBHm_Chr6g0284421 RchiOBHm_Chr6g0284441
rosa_laevigata	RLG00000012745
rosa_multiflora	Rmu_sc0005959.1_g000001 Rmu_sc0032923.1_g000001
rosa_roxburghii	Rroxscaffold_7G00184710
rosa_rugosa	Rorug06G0163100 Rorug06G0163200 Rorug06G0163300 Rorug06G0163400 Rorug06G0163500 Rorug06G0163600 Rorug06G0163700
rosa_samantha	Rh6AG275900 Rh6BG276300 Rh6CG278300 Rh6CG278400
rosa_wichuraiana	Rw6G023740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	2 cut(s)	157, 295
AclWI	GGATC	1 cut(s)	287
AcsI	RAATTY	2 cut(s)	501, 582
AfeI	AGCGCT	1 cut(s)	228
AgsI	TTSAA	5 cut(s)	32, 191, 382, 470, 669
AluBI	AGCT	4 cut(s)	187, 252, 548, 628
AluI	AGCT	4 cut(s)	187, 252, 548, 628
Alw21I	GWGCWC	1 cut(s)	409
Alw26I	GTCTC	1 cut(s)	202
AlwI	GGATC	1 cut(s)	287
Ama87I	CYCGRG	3 cut(s)	213, 222, 656
Aor13HI	TCCGGA	2 cut(s)	157, 295
Aor51HI	AGCGCT	1 cut(s)	228
AoxI	GGCC	1 cut(s)	621
ApeKI	GCWGC	1 cut(s)	260
ApoI	RAATTY	2 cut(s)	501, 582
AspLEI	GCGC	1 cut(s)	229
AspS9I	GGNCC	1 cut(s)	621
AvaI	CYCGRG	3 cut(s)	213, 222, 656
Bbv12I	GWGCWC	1 cut(s)	409
BbvI	GCAGC	1 cut(s)	247
BccI	CCATC	1 cut(s)	31
BclI	TGATCA	1 cut(s)	280
BcoDI	GTCTC	1 cut(s)	202
BfmI	CTRYAG	2 cut(s)	264, 718
BfoI	RGCGCY	1 cut(s)	230
BisI	GCNGC	1 cut(s)	261
BlsI	GCNGC	1 cut(s)	262
BmeT110I	CYCGRG	3 cut(s)	213, 222, 656
BmgT120I	GGNCC	1 cut(s)	621
BmsI	GCATC	1 cut(s)	300
BpmI	CTGGAG	1 cut(s)	330
BsaI	GGTCTC	1 cut(s)	202
BsaJI	CCNNGG	1 cut(s)	315
BsaWI	WCCGGW	2 cut(s)	157, 295
Bse1I	ACTGG	1 cut(s)	645
Bse3DI	GCAATG	2 cut(s)	40, 201
BseAI	TCCGGA	2 cut(s)	157, 295
BseDI	CCNNGG	1 cut(s)	315
BseGI	GGATG	1 cut(s)	378
BseMI	GCAATG	2 cut(s)	40, 201
BseMII	CTCAG	1 cut(s)	540
BseNI	ACTGG	1 cut(s)	645
BseRI	GAGGAG	2 cut(s)	8, 42
BseXI	GCAGC	1 cut(s)	247
BsgI	GTGCAG	1 cut(s)	636
BshFI	GGCC	1 cut(s)	623
BsiHKAI	GWGCWC	1 cut(s)	409
BsiHKCI	CYCGRG	3 cut(s)	213, 222, 656
BsiSI	CCGG	3 cut(s)	158, 296, 541
BsmAI	GTCTC	1 cut(s)	202
BsnI	GGCC	1 cut(s)	623
Bso31I	GGTCTC	1 cut(s)	202
BsoBI	CYCGRG	3 cut(s)	213, 222, 656
Bsp1286I	GDGCHC	1 cut(s)	409
Bsp13I	TCCGGA	2 cut(s)	157, 295
Bsp143I	GATC	2 cut(s)	280, 292
BspANI	GGCC	1 cut(s)	623
BspCNI	CTCAG	1 cut(s)	541
BspEI	TCCGGA	2 cut(s)	157, 295
BspPI	GGATC	1 cut(s)	287
BspTNI	GGTCTC	1 cut(s)	202
BsrDI	GCAATG	2 cut(s)	40, 201
BsrI	ACTGG	1 cut(s)	645
BssECI	CCNNGG	1 cut(s)	315
BssMI	GATC	2 cut(s)	280, 292
BssT1I	CCWWGG	1 cut(s)	315
Bst4CI	ACNGT	1 cut(s)	325
Bst6I	CTCTTC	2 cut(s)	100, 555
BstC8I	GCNNGC	4 cut(s)	250, 409, 479, 546
BstDEI	CTNAG	3 cut(s)	253, 487, 549
BstF5I	GGATG	1 cut(s)	378
BstH2I	RGCGCY	1 cut(s)	230
BstHHI	GCGC	1 cut(s)	229
BstKTI	GATC	2 cut(s)	283, 295
BstMAI	GTCTC	1 cut(s)	202
BstMBI	GATC	2 cut(s)	280, 292
BstMWI	GCNNNNNNNGC	4 cut(s)	42, 184, 224, 634
BstSFI	CTRYAG	2 cut(s)	264, 718
BstV1I	GCAGC	1 cut(s)	247
BsuRI	GGCC	1 cut(s)	623
BtsCI	GGATG	1 cut(s)	378
BtsIMutI	CAGTG	1 cut(s)	638
Cac8I	GCNNGC	4 cut(s)	250, 409, 479, 546
CfoI	GCGC	1 cut(s)	229
Cfr13I	GGNCC	1 cut(s)	621
CviAII	CATG	1 cut(s)	148
CviJI	RGCY	8 cut(s)	5, 152, 187, 252, 260, 548, 623, 628
CviKI_1	RGCY	8 cut(s)	5, 152, 187, 252, 260, 548, 623, 628
DdeI	CTNAG	3 cut(s)	253, 487, 549
DpnI	GATC	2 cut(s)	282, 294
DpnII	GATC	2 cut(s)	280, 292
Eam1104I	CTCTTC	2 cut(s)	100, 555
EarI	CTCTTC	2 cut(s)	100, 555
Eco130I	CCWWGG	1 cut(s)	315
Eco31I	GGTCTC	1 cut(s)	202
Eco47III	AGCGCT	1 cut(s)	228
Eco88I	CYCGRG	3 cut(s)	213, 222, 656
EcoRI	GAATTC	1 cut(s)	582
EcoT14I	CCWWGG	1 cut(s)	315
ErhI	CCWWGG	1 cut(s)	315
FaeI	CATG	1 cut(s)	151
FaiI	YATR	7 cut(s)	72, 74, 149, 266, 533, 720, 727
FalI	AAGNNNNNCTT	2 cut(s)	470, 502
FatI	CATG	1 cut(s)	147
FbaI	TGATCA	1 cut(s)	280
Fnu4HI	GCNGC	1 cut(s)	261
FokI	GGATG	1 cut(s)	385
Fsp4HI	GCNGC	1 cut(s)	261
GlaI	GCGC	1 cut(s)	228
GluI	GCNGC	1 cut(s)	261
GsuI	CTGGAG	1 cut(s)	330
HaeII	RGCGCY	1 cut(s)	230
HaeIII	GGCC	1 cut(s)	623
HapII	CCGG	3 cut(s)	158, 296, 541
HhaI	GCGC	1 cut(s)	229
Hin1II	CATG	1 cut(s)	151
Hin6I	GCGC	1 cut(s)	227
HinP1I	GCGC	1 cut(s)	227
HindIII	AAGCTT	1 cut(s)	626
HinfI	GANTC	4 cut(s)	15, 49, 341, 466
HpaII	CCGG	3 cut(s)	158, 296, 541
Hpy166II	GTNNAC	3 cut(s)	166, 328, 686
Hpy188I	TCNGA	4 cut(s)	14, 102, 132, 207
Hpy188III	TCNNGA	3 cut(s)	158, 296, 347
Hpy8I	GTNNAC	3 cut(s)	166, 328, 686
HpyAV	CCTTC	5 cut(s)	362, 412, 451, 547, 612
HpyCH4III	ACNGT	1 cut(s)	325
HpyCH4V	TGCA	3 cut(s)	45, 120, 653
HpyF10VI	GCNNNNNNNGC	4 cut(s)	42, 184, 224, 634
HpyF3I	CTNAG	3 cut(s)	253, 487, 549
Hsp92II	CATG	1 cut(s)	151
HspAI	GCGC	1 cut(s)	227
Kpn2I	TCCGGA	2 cut(s)	157, 295
Ksp22I	TGATCA	1 cut(s)	280
Kzo9I	GATC	2 cut(s)	280, 292
Lsp1109I	GCAGC	1 cut(s)	247
LweI	GCATC	1 cut(s)	300
MaeIII	GTNAC	2 cut(s)	319, 710
MalI	GATC	2 cut(s)	282, 294
MboI	GATC	2 cut(s)	280, 292
MboII	GAAGA	7 cut(s)	87, 149, 427, 437, 440, 521, 572
MhlI	GDGCHC	1 cut(s)	409
MluCI	AATT	9 cut(s)	56, 84, 173, 377, 392, 437, 501, 582, 593
MlyI	GAGTC	2 cut(s)	9, 43
MmeI	TCCRAC	1 cut(s)	37
MnlI	CCTC	7 cut(s)	20, 29, 63, 250, 456, 550, 725
MroI	TCCGGA	2 cut(s)	157, 295
MseI	TTAA	3 cut(s)	333, 395, 733
MslI	CAYNNNNRTG	1 cut(s)	288
MspI	CCGG	3 cut(s)	158, 296, 541
MwoI	GCNNNNNNNGC	4 cut(s)	42, 184, 224, 634
NdeII	GATC	2 cut(s)	280, 292
NlaIII	CATG	1 cut(s)	151
NmuCI	GTSAC	1 cut(s)	710
PaeR7I	CTCGAG	1 cut(s)	222
PfeI	GAWTC	2 cut(s)	341, 466
PkrI	GCNGC	1 cut(s)	262
PleI	GAGTC	2 cut(s)	9, 43
PpsI	GAGTC	2 cut(s)	9, 43
PspPI	GGNCC	1 cut(s)	621
PspXI	VCTCGAGB	1 cut(s)	222
RseI	CAYNNNNRTG	1 cut(s)	288
SaqAI	TTAA	3 cut(s)	333, 395, 733
SatI	GCNGC	1 cut(s)	261
Sau3AI	GATC	2 cut(s)	280, 292
Sau96I	GGNCC	1 cut(s)	621
SchI	GAGTC	2 cut(s)	9, 43
SduI	GDGCHC	1 cut(s)	409
SetI	ASST	8 cut(s)	127, 189, 254, 550, 630, 676, 696, 717
SfaNI	GCATC	1 cut(s)	300
SfcI	CTRYAG	2 cut(s)	264, 718
Sfr274I	CTCGAG	1 cut(s)	222
SlaI	CTCGAG	1 cut(s)	222
SmiMI	CAYNNNNRTG	1 cut(s)	288
SmlI	CTYRAG	1 cut(s)	222
SmoI	CTYRAG	1 cut(s)	222
Sse9I	AATT	9 cut(s)	56, 84, 173, 377, 392, 437, 501, 582, 593
StyI	CCWWGG	1 cut(s)	315
TaaI	ACNGT	1 cut(s)	325
TaqI	TCGA	2 cut(s)	223, 339
TaqII	GACCGA	1 cut(s)	149
TasI	AATT	9 cut(s)	56, 84, 173, 377, 392, 437, 501, 582, 593
TfiI	GAWTC	2 cut(s)	341, 466
Tru1I	TTAA	3 cut(s)	333, 395, 733
Tru9I	TTAA	3 cut(s)	333, 395, 733
TscAI	CASTG	1 cut(s)	645
TseFI	GTSAC	1 cut(s)	710
TseI	GCWGC	1 cut(s)	260
Tsp45I	GTSAC	1 cut(s)	710
TspDTI	ATGAA	4 cut(s)	59, 221, 389, 531
TspGWI	ACGGA	1 cut(s)	380
TspRI	CASTG	1 cut(s)	645
XapI	RAATTY	2 cut(s)	501, 582
XhoI	CTCGAG	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.